Strain Fitness in Dechlorosoma suillum PS around Dsui_1027

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1026 and Dsui_1027 overlap by 1 nucleotidesDsui_1027 and Dsui_1028 overlap by 11 nucleotidesDsui_1028 and Dsui_1029 are separated by 16 nucleotidesDsui_1029 and Dsui_1030 are separated by 78 nucleotides Dsui_1026: Dsui_1026 - putative Zn-dependent peptidase, at 1,058,880 to 1,060,172 _1026 Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780 _1027 Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267 _1028 Dsui_1029: Dsui_1029 - hypothetical protein, at 1,061,284 to 1,061,541 _1029 Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575 _1030 Position (kb) 1060 1061Strain fitness (log2 ratio) -1 0 1 2at 1059.199 kb on + strand, within Dsui_1026at 1059.302 kb on - strandat 1059.479 kb on + strand, within Dsui_1026at 1059.533 kb on + strand, within Dsui_1026at 1059.534 kb on + strand, within Dsui_1026at 1059.693 kb on + strand, within Dsui_1026at 1059.780 kb on + strandat 1059.788 kb on - strandat 1059.810 kb on - strand, within Dsui_1026at 1060.111 kb on - strandat 1060.328 kb on - strandat 1060.372 kb on - strand, within Dsui_1027at 1060.407 kb on + strand, within Dsui_1027at 1060.460 kb on + strand, within Dsui_1027at 1060.460 kb on + strand, within Dsui_1027at 1060.465 kb on + strand, within Dsui_1027at 1060.551 kb on + strand, within Dsui_1027at 1060.559 kb on - strandat 1060.767 kb on - strandat 1060.767 kb on - strandat 1061.638 kb on - strandat 1061.717 kb on + strandat 1061.725 kb on - strandat 1061.764 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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1,059,199 + Dsui_1026 0.25 -1.1
1,059,302 - +0.4
1,059,479 + Dsui_1026 0.46 -0.3
1,059,533 + Dsui_1026 0.51 -1.5
1,059,534 + Dsui_1026 0.51 -1.6
1,059,693 + Dsui_1026 0.63 -0.2
1,059,780 + +0.8
1,059,788 - +0.4
1,059,810 - Dsui_1026 0.72 -0.7
1,060,111 - +0.4
1,060,328 - +2.4
1,060,372 - Dsui_1027 0.33 +0.4
1,060,407 + Dsui_1027 0.39 +0.3
1,060,460 + Dsui_1027 0.47 -0.5
1,060,460 + Dsui_1027 0.47 +0.3
1,060,465 + Dsui_1027 0.48 -0.4
1,060,551 + Dsui_1027 0.62 -0.3
1,060,559 - +0.4
1,060,767 - -0.4
1,060,767 - +0.6
1,061,638 - +0.2
1,061,717 + +0.4
1,061,725 - +0.1
1,061,764 + +1.0

Or see this region's nucleotide sequence