Strain Fitness in Dechlorosoma suillum PS around Dsui_0995

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0993 and Dsui_0994 overlap by 1 nucleotidesDsui_0994 and Dsui_0995 are separated by 18 nucleotidesDsui_0995 and Dsui_0996 are separated by 75 nucleotides Dsui_0993: Dsui_0993 - polyprenyl p-hydroxybenzoate/phenylacrylic acid decarboxylase, at 1,019,699 to 1,020,316 _0993 Dsui_0994: Dsui_0994 - peptidase S16, lon domain protein, at 1,020,316 to 1,020,957 _0994 Dsui_0995: Dsui_0995 - arabinose efflux permease family protein, at 1,020,976 to 1,022,196 _0995 Dsui_0996: Dsui_0996 - soluble lytic murein transglycosylase-like protein, at 1,022,272 to 1,022,979 _0996 Position (kb) 1020 1021 1022 1023Strain fitness (log2 ratio) -2 -1 0 1 2at 1020.458 kb on - strand, within Dsui_0994at 1020.463 kb on - strandat 1020.500 kb on - strand, within Dsui_0994at 1020.514 kb on + strand, within Dsui_0994at 1020.730 kb on + strand, within Dsui_0994at 1020.747 kb on - strand, within Dsui_0994at 1020.951 kb on + strandat 1020.976 kb on - strandat 1021.067 kb on - strandat 1021.244 kb on - strand, within Dsui_0995at 1021.389 kb on + strand, within Dsui_0995at 1021.476 kb on - strand, within Dsui_0995at 1021.640 kb on + strand, within Dsui_0995at 1021.648 kb on - strand, within Dsui_0995at 1021.648 kb on - strandat 1021.696 kb on - strandat 1021.811 kb on - strand, within Dsui_0995at 1021.971 kb on - strand, within Dsui_0995at 1022.011 kb on + strand, within Dsui_0995at 1022.050 kb on + strand, within Dsui_0995at 1022.123 kb on + strandat 1022.131 kb on - strandat 1022.159 kb on - strandat 1022.185 kb on + strandat 1022.239 kb on + strandat 1022.339 kb on + strandat 1022.344 kb on + strand, within Dsui_0996at 1022.552 kb on + strand, within Dsui_0996at 1022.643 kb on - strand, within Dsui_0996at 1022.701 kb on + strand, within Dsui_0996at 1022.701 kb on + strand, within Dsui_0996at 1022.709 kb on - strand, within Dsui_0996at 1022.901 kb on + strand, within Dsui_0996at 1022.906 kb on + strand, within Dsui_0996at 1022.909 kb on - strandat 1022.919 kb on - strandat 1023.015 kb on + strandat 1023.034 kb on - strandat 1023.121 kb on + strandat 1023.131 kb on + strandat 1023.132 kb on + strandat 1023.133 kb on + strandat 1023.141 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
1,020,458 - Dsui_0994 0.22 +0.5
1,020,463 - +0.2
1,020,500 - Dsui_0994 0.29 +0.3
1,020,514 + Dsui_0994 0.31 +0.5
1,020,730 + Dsui_0994 0.64 +0.6
1,020,747 - Dsui_0994 0.67 +0.4
1,020,951 + -0.0
1,020,976 - +0.1
1,021,067 - +0.7
1,021,244 - Dsui_0995 0.22 +0.5
1,021,389 + Dsui_0995 0.34 +0.3
1,021,476 - Dsui_0995 0.41 +0.3
1,021,640 + Dsui_0995 0.54 +0.8
1,021,648 - Dsui_0995 0.55 +0.4
1,021,648 - +2.4
1,021,696 - +2.4
1,021,811 - Dsui_0995 0.68 +1.4
1,021,971 - Dsui_0995 0.81 -0.1
1,022,011 + Dsui_0995 0.85 +0.0
1,022,050 + Dsui_0995 0.88 +1.0
1,022,123 + +0.2
1,022,131 - -0.1
1,022,159 - +0.5
1,022,185 + +0.5
1,022,239 + -0.7
1,022,339 + -0.2
1,022,344 + Dsui_0996 0.10 +0.0
1,022,552 + Dsui_0996 0.40 +0.1
1,022,643 - Dsui_0996 0.52 -0.3
1,022,701 + Dsui_0996 0.61 +0.6
1,022,701 + Dsui_0996 0.61 -0.1
1,022,709 - Dsui_0996 0.62 +0.2
1,022,901 + Dsui_0996 0.89 -1.9
1,022,906 + Dsui_0996 0.90 -0.2
1,022,909 - +0.4
1,022,919 - +0.5
1,023,015 + +1.1
1,023,034 - -0.5
1,023,121 + +0.0
1,023,131 + -0.4
1,023,132 + -1.1
1,023,133 + +0.1
1,023,141 - +0.2

Or see this region's nucleotide sequence