Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0636 and Dsui_0637 are separated by 3 nucleotides Dsui_0637 and Dsui_0638 overlap by 4 nucleotides Dsui_0638 and Dsui_0639 are separated by 107 nucleotides Dsui_0639 and Dsui_0640 are separated by 182 nucleotides
Dsui_0636: Dsui_0636 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 630,460 to 631,197
_0636
Dsui_0637: Dsui_0637 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 631,201 to 631,875
_0637
Dsui_0638: Dsui_0638 - ABC-type polar amino acid transport system, ATPase component, at 631,872 to 632,600
_0638
Dsui_0639: Dsui_0639 - hypothetical protein, at 632,708 to 632,929
_0639
Dsui_0640: Dsui_0640 - 5,10-methylenetetrahydrofolate reductase, at 633,112 to 633,951
_0640
Position (kb) 631
632
633 Strain fitness (log2 ratio) -1
0
1
2 at 630.874 kb on + strand, within Dsui_0636 at 630.895 kb on + strand, within Dsui_0636 at 630.915 kb on - strand, within Dsui_0636 at 630.927 kb on - strand, within Dsui_0636 at 631.080 kb on - strand, within Dsui_0636 at 631.085 kb on - strand, within Dsui_0636 at 631.097 kb on + strand, within Dsui_0636 at 631.126 kb on - strand at 631.186 kb on - strand at 631.268 kb on + strand at 631.386 kb on + strand, within Dsui_0637 at 631.452 kb on - strand, within Dsui_0637 at 631.497 kb on - strand, within Dsui_0637 at 631.504 kb on + strand, within Dsui_0637 at 631.515 kb on + strand, within Dsui_0637 at 631.523 kb on - strand, within Dsui_0637 at 631.586 kb on - strand, within Dsui_0637 at 631.638 kb on + strand, within Dsui_0637 at 631.646 kb on - strand, within Dsui_0637 at 631.647 kb on - strand, within Dsui_0637 at 631.682 kb on + strand, within Dsui_0637 at 631.917 kb on - strand at 631.941 kb on - strand at 631.962 kb on - strand, within Dsui_0638 at 631.990 kb on + strand, within Dsui_0638 at 631.998 kb on - strand, within Dsui_0638 at 632.000 kb on + strand, within Dsui_0638 at 632.026 kb on + strand, within Dsui_0638 at 632.104 kb on - strand, within Dsui_0638 at 632.177 kb on + strand, within Dsui_0638 at 632.177 kb on + strand, within Dsui_0638 at 632.184 kb on + strand, within Dsui_0638 at 632.185 kb on - strand, within Dsui_0638 at 632.185 kb on - strand, within Dsui_0638 at 632.209 kb on - strand, within Dsui_0638 at 632.214 kb on + strand, within Dsui_0638 at 632.221 kb on + strand, within Dsui_0638 at 632.386 kb on + strand, within Dsui_0638 at 632.594 kb on + strand at 632.594 kb on + strand at 632.594 kb on + strand at 632.602 kb on - strand at 632.692 kb on - strand at 632.737 kb on - strand, within Dsui_0639 at 632.744 kb on + strand, within Dsui_0639 at 632.747 kb on - strand, within Dsui_0639 at 632.888 kb on + strand, within Dsui_0639 at 632.935 kb on - strand at 632.983 kb on - strand at 633.062 kb on + strand at 633.062 kb on + strand at 633.062 kb on + strand at 633.070 kb on - strand at 633.070 kb on - strand at 633.070 kb on - strand at 633.077 kb on - strand at 633.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 630,874 + Dsui_0636 0.56 +1.8 630,895 + Dsui_0636 0.59 +1.4 630,915 - Dsui_0636 0.62 +1.8 630,927 - Dsui_0636 0.63 +1.0 631,080 - Dsui_0636 0.84 +1.3 631,085 - Dsui_0636 0.85 +2.0 631,097 + Dsui_0636 0.86 +1.6 631,126 - +1.4 631,186 - +0.6 631,268 + +1.6 631,386 + Dsui_0637 0.27 +1.3 631,452 - Dsui_0637 0.37 +1.5 631,497 - Dsui_0637 0.44 +2.0 631,504 + Dsui_0637 0.45 +2.5 631,515 + Dsui_0637 0.47 +1.3 631,523 - Dsui_0637 0.48 +0.9 631,586 - Dsui_0637 0.57 +1.0 631,638 + Dsui_0637 0.65 +1.2 631,646 - Dsui_0637 0.66 +1.4 631,647 - Dsui_0637 0.66 +1.9 631,682 + Dsui_0637 0.71 +1.1 631,917 - +0.7 631,941 - +1.8 631,962 - Dsui_0638 0.12 +1.5 631,990 + Dsui_0638 0.16 +2.1 631,998 - Dsui_0638 0.17 +2.3 632,000 + Dsui_0638 0.18 +1.6 632,026 + Dsui_0638 0.21 +1.6 632,104 - Dsui_0638 0.32 +2.0 632,177 + Dsui_0638 0.42 +2.3 632,177 + Dsui_0638 0.42 +1.5 632,184 + Dsui_0638 0.43 +1.5 632,185 - Dsui_0638 0.43 +1.7 632,185 - Dsui_0638 0.43 +1.8 632,209 - Dsui_0638 0.46 +1.3 632,214 + Dsui_0638 0.47 +1.8 632,221 + Dsui_0638 0.48 +1.7 632,386 + Dsui_0638 0.71 +1.5 632,594 + -0.2 632,594 + +0.2 632,594 + +0.5 632,602 - -0.4 632,692 - +0.5 632,737 - Dsui_0639 0.13 -0.2 632,744 + Dsui_0639 0.16 -1.5 632,747 - Dsui_0639 0.18 -0.2 632,888 + Dsui_0639 0.81 -0.2 632,935 - +0.2 632,983 - +0.0 633,062 + -0.2 633,062 + +0.2 633,062 + +0.7 633,070 - +0.2 633,070 - +0.3 633,070 - -0.0 633,077 - +0.6 633,118 - +0.2
Or see this region's nucleotide sequence