Experiment: Anaero. lactate (C), chlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0634 and Dsui_0635 are separated by 99 nucleotides Dsui_0635 and Dsui_0636 are separated by 74 nucleotides Dsui_0636 and Dsui_0637 are separated by 3 nucleotides
Dsui_0634: Dsui_0634 - putative permease, DMT superfamily, at 628,475 to 629,386
_0634
Dsui_0635: Dsui_0635 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 629,486 to 630,385
_0635
Dsui_0636: Dsui_0636 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 630,460 to 631,197
_0636
Dsui_0637: Dsui_0637 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 631,201 to 631,875
_0637
Position (kb)
629
630
631 Strain fitness (log2 ratio)
-1
0
1
2 at 628.578 kb on - strand, within Dsui_0634 at 628.642 kb on + strand, within Dsui_0634 at 628.685 kb on - strand, within Dsui_0634 at 628.701 kb on + strand, within Dsui_0634 at 628.701 kb on + strand, within Dsui_0634 at 628.776 kb on - strand, within Dsui_0634 at 628.796 kb on + strand, within Dsui_0634 at 628.806 kb on + strand, within Dsui_0634 at 628.819 kb on - strand, within Dsui_0634 at 628.845 kb on - strand, within Dsui_0634 at 628.982 kb on + strand, within Dsui_0634 at 628.987 kb on + strand, within Dsui_0634 at 628.990 kb on - strand, within Dsui_0634 at 628.990 kb on - strand, within Dsui_0634 at 629.188 kb on - strand, within Dsui_0634 at 629.359 kb on - strand at 629.386 kb on + strand at 629.412 kb on - strand at 629.462 kb on + strand at 629.467 kb on + strand at 629.503 kb on - strand at 629.503 kb on - strand at 629.552 kb on - strand at 629.571 kb on + strand at 629.579 kb on - strand, within Dsui_0635 at 629.598 kb on + strand, within Dsui_0635 at 629.604 kb on + strand, within Dsui_0635 at 629.611 kb on - strand, within Dsui_0635 at 629.679 kb on + strand, within Dsui_0635 at 629.728 kb on - strand, within Dsui_0635 at 629.792 kb on + strand, within Dsui_0635 at 629.806 kb on - strand at 629.808 kb on - strand, within Dsui_0635 at 629.896 kb on + strand, within Dsui_0635 at 630.095 kb on + strand, within Dsui_0635 at 630.108 kb on - strand, within Dsui_0635 at 630.121 kb on + strand, within Dsui_0635 at 630.121 kb on + strand, within Dsui_0635 at 630.135 kb on - strand, within Dsui_0635 at 630.171 kb on - strand, within Dsui_0635 at 630.173 kb on + strand, within Dsui_0635 at 630.173 kb on + strand, within Dsui_0635 at 630.230 kb on + strand, within Dsui_0635 at 630.241 kb on + strand, within Dsui_0635 at 630.257 kb on - strand, within Dsui_0635 at 630.276 kb on - strand, within Dsui_0635 at 630.382 kb on - strand at 630.494 kb on + strand at 630.494 kb on + strand at 630.497 kb on - strand at 630.529 kb on - strand at 630.531 kb on + strand at 630.531 kb on + strand at 630.554 kb on - strand, within Dsui_0636 at 630.554 kb on - strand, within Dsui_0636 at 630.599 kb on - strand, within Dsui_0636 at 630.663 kb on + strand, within Dsui_0636 at 630.671 kb on - strand, within Dsui_0636 at 630.688 kb on + strand, within Dsui_0636 at 630.745 kb on - strand, within Dsui_0636 at 630.809 kb on - strand, within Dsui_0636 at 630.814 kb on - strand, within Dsui_0636 at 630.814 kb on - strand, within Dsui_0636 at 630.816 kb on + strand, within Dsui_0636 at 630.874 kb on + strand, within Dsui_0636 at 630.895 kb on + strand, within Dsui_0636 at 630.915 kb on - strand, within Dsui_0636 at 630.927 kb on - strand, within Dsui_0636 at 631.080 kb on - strand, within Dsui_0636 at 631.085 kb on - strand, within Dsui_0636 at 631.097 kb on + strand, within Dsui_0636 at 631.126 kb on - strand at 631.186 kb on - strand at 631.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor remove 628,578 - Dsui_0634 0.11 +0.8 628,642 + Dsui_0634 0.18 +0.3 628,685 - Dsui_0634 0.23 +0.8 628,701 + Dsui_0634 0.25 +0.1 628,701 + Dsui_0634 0.25 +0.3 628,776 - Dsui_0634 0.33 -0.2 628,796 + Dsui_0634 0.35 -0.1 628,806 + Dsui_0634 0.36 +0.4 628,819 - Dsui_0634 0.38 +1.0 628,845 - Dsui_0634 0.41 -1.1 628,982 + Dsui_0634 0.56 +0.6 628,987 + Dsui_0634 0.56 +0.3 628,990 - Dsui_0634 0.56 +0.2 628,990 - Dsui_0634 0.56 -0.5 629,188 - Dsui_0634 0.78 -0.0 629,359 - +0.1 629,386 + +0.1 629,412 - +1.4 629,462 + +1.7 629,467 + +1.9 629,503 - +1.5 629,503 - +1.8 629,552 - +1.4 629,571 + +1.2 629,579 - Dsui_0635 0.10 +0.4 629,598 + Dsui_0635 0.12 +2.0 629,604 + Dsui_0635 0.13 +1.5 629,611 - Dsui_0635 0.14 +1.3 629,679 + Dsui_0635 0.21 +0.3 629,728 - Dsui_0635 0.27 +2.3 629,792 + Dsui_0635 0.34 +1.8 629,806 - +2.3 629,808 - Dsui_0635 0.36 +1.7 629,896 + Dsui_0635 0.46 +1.7 630,095 + Dsui_0635 0.68 +1.3 630,108 - Dsui_0635 0.69 +1.8 630,121 + Dsui_0635 0.71 +1.7 630,121 + Dsui_0635 0.71 +1.8 630,135 - Dsui_0635 0.72 +1.9 630,171 - Dsui_0635 0.76 +1.5 630,173 + Dsui_0635 0.76 +1.9 630,173 + Dsui_0635 0.76 +1.7 630,230 + Dsui_0635 0.83 +2.6 630,241 + Dsui_0635 0.84 +2.3 630,257 - Dsui_0635 0.86 +0.7 630,276 - Dsui_0635 0.88 +2.7 630,382 - +2.0 630,494 + +1.8 630,494 + +1.8 630,497 - +2.0 630,529 - +1.9 630,531 + +1.2 630,531 + +1.1 630,554 - Dsui_0636 0.13 +1.6 630,554 - Dsui_0636 0.13 +2.2 630,599 - Dsui_0636 0.19 +1.6 630,663 + Dsui_0636 0.28 +1.9 630,671 - Dsui_0636 0.29 +2.0 630,688 + Dsui_0636 0.31 +2.5 630,745 - Dsui_0636 0.39 +1.9 630,809 - Dsui_0636 0.47 +1.6 630,814 - Dsui_0636 0.48 +1.3 630,814 - Dsui_0636 0.48 +1.7 630,816 + Dsui_0636 0.48 +1.2 630,874 + Dsui_0636 0.56 +1.8 630,895 + Dsui_0636 0.59 +1.4 630,915 - Dsui_0636 0.62 +1.8 630,927 - Dsui_0636 0.63 +1.0 631,080 - Dsui_0636 0.84 +1.3 631,085 - Dsui_0636 0.85 +2.0 631,097 + Dsui_0636 0.86 +1.6 631,126 - +1.4 631,186 - +0.6 631,268 + +1.6
Or see this region's nucleotide sequence