Strain Fitness in Dechlorosoma suillum PS around Dsui_0492

Experiment: Anaero. lactate (C), chlorate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0491 and Dsui_0492 are separated by 144 nucleotidesDsui_0492 and Dsui_0493 are separated by 5 nucleotidesDsui_0493 and Dsui_0494 are separated by 13 nucleotides Dsui_0491: Dsui_0491 - putative oxygen-independent coproporphyrinogen III oxidase, at 493,858 to 495,096 _0491 Dsui_0492: Dsui_0492 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 495,241 to 495,831 _0492 Dsui_0493: Dsui_0493 - hypothetical protein, at 495,837 to 496,745 _0493 Dsui_0494: Dsui_0494 - ribonuclease PH, at 496,759 to 497,475 _0494 Position (kb) 495 496Strain fitness (log2 ratio) -2 -1 0 1 2at 494.426 kb on - strand, within Dsui_0491at 494.495 kb on + strandat 494.500 kb on + strand, within Dsui_0491at 494.573 kb on + strand, within Dsui_0491at 494.593 kb on - strand, within Dsui_0491at 494.609 kb on + strand, within Dsui_0491at 494.609 kb on + strand, within Dsui_0491at 494.610 kb on - strand, within Dsui_0491at 494.715 kb on + strand, within Dsui_0491at 494.755 kb on + strand, within Dsui_0491at 494.800 kb on - strand, within Dsui_0491at 494.810 kb on - strand, within Dsui_0491at 494.810 kb on - strand, within Dsui_0491at 494.810 kb on - strand, within Dsui_0491at 494.855 kb on - strand, within Dsui_0491at 494.923 kb on + strand, within Dsui_0491at 494.980 kb on + strandat 495.155 kb on + strandat 495.202 kb on - strandat 495.238 kb on + strandat 495.487 kb on - strand, within Dsui_0492at 495.598 kb on + strand, within Dsui_0492at 495.765 kb on - strand, within Dsui_0492at 495.772 kb on - strand, within Dsui_0492at 495.772 kb on - strand, within Dsui_0492at 495.775 kb on + strandat 495.808 kb on - strandat 495.828 kb on + strandat 495.833 kb on + strandat 495.833 kb on + strandat 495.833 kb on + strandat 495.841 kb on - strandat 495.841 kb on - strandat 496.081 kb on - strand, within Dsui_0493at 496.255 kb on + strand, within Dsui_0493at 496.277 kb on + strand, within Dsui_0493at 496.526 kb on - strand, within Dsui_0493at 496.639 kb on + strand, within Dsui_0493at 496.647 kb on - strand, within Dsui_0493at 496.668 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
remove
494,426 - Dsui_0491 0.46 +0.4
494,495 + -0.2
494,500 + Dsui_0491 0.52 -0.4
494,573 + Dsui_0491 0.58 -0.2
494,593 - Dsui_0491 0.59 -0.0
494,609 + Dsui_0491 0.61 +0.1
494,609 + Dsui_0491 0.61 -0.2
494,610 - Dsui_0491 0.61 +0.3
494,715 + Dsui_0491 0.69 -1.7
494,755 + Dsui_0491 0.72 +0.1
494,800 - Dsui_0491 0.76 -0.2
494,810 - Dsui_0491 0.77 +0.1
494,810 - Dsui_0491 0.77 +2.4
494,810 - Dsui_0491 0.77 -0.1
494,855 - Dsui_0491 0.80 -1.7
494,923 + Dsui_0491 0.86 -0.9
494,980 + -0.2
495,155 + -0.6
495,202 - +0.2
495,238 + +0.3
495,487 - Dsui_0492 0.42 +0.0
495,598 + Dsui_0492 0.60 -1.3
495,765 - Dsui_0492 0.89 -0.7
495,772 - Dsui_0492 0.90 -0.4
495,772 - Dsui_0492 0.90 -1.8
495,775 + -0.0
495,808 - -0.1
495,828 + -0.3
495,833 + -0.2
495,833 + +0.1
495,833 + +0.2
495,841 - +2.1
495,841 - +0.2
496,081 - Dsui_0493 0.27 -0.1
496,255 + Dsui_0493 0.46 +0.6
496,277 + Dsui_0493 0.48 -0.2
496,526 - Dsui_0493 0.76 -0.7
496,639 + Dsui_0493 0.88 +0.3
496,647 - Dsui_0493 0.89 +0.7
496,668 - -0.0

Or see this region's nucleotide sequence