Strain Fitness in Dechlorosoma suillum PS around Dsui_0208

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0206 and Dsui_0207 overlap by 4 nucleotidesDsui_0207 and Dsui_0208 overlap by 1 nucleotidesDsui_0208 and Dsui_0209 overlap by 1 nucleotides Dsui_0206: Dsui_0206 - phage conserved hypothetical protein, at 205,448 to 206,554 _0206 Dsui_0207: Dsui_0207 - hypothetical protein, at 206,551 to 206,979 _0207 Dsui_0208: Dsui_0208 - hypothetical protein, at 206,979 to 210,539 _0208 Dsui_0209: Dsui_0209 - hypothetical protein, at 210,539 to 211,630 _0209 Position (kb) 206 207 208 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2at 205.989 kb on + strand, within Dsui_0206at 206.066 kb on - strand, within Dsui_0206at 206.246 kb on - strand, within Dsui_0206at 206.291 kb on + strand, within Dsui_0206at 206.403 kb on + strand, within Dsui_0206at 206.403 kb on + strand, within Dsui_0206at 206.411 kb on - strand, within Dsui_0206at 206.595 kb on - strand, within Dsui_0207at 206.628 kb on + strand, within Dsui_0207at 206.777 kb on + strand, within Dsui_0207at 207.020 kb on + strandat 207.232 kb on + strandat 207.340 kb on + strand, within Dsui_0208at 207.390 kb on + strand, within Dsui_0208at 207.398 kb on - strand, within Dsui_0208at 207.398 kb on - strand, within Dsui_0208at 207.408 kb on - strand, within Dsui_0208at 207.430 kb on + strandat 207.430 kb on + strand, within Dsui_0208at 207.430 kb on + strand, within Dsui_0208at 207.430 kb on + strand, within Dsui_0208at 207.527 kb on - strand, within Dsui_0208at 207.556 kb on - strand, within Dsui_0208at 207.596 kb on - strand, within Dsui_0208at 207.620 kb on - strand, within Dsui_0208at 207.655 kb on - strand, within Dsui_0208at 207.655 kb on - strand, within Dsui_0208at 207.717 kb on + strand, within Dsui_0208at 207.718 kb on + strandat 207.748 kb on + strandat 207.764 kb on + strand, within Dsui_0208at 207.892 kb on + strand, within Dsui_0208at 207.911 kb on + strand, within Dsui_0208at 207.936 kb on - strand, within Dsui_0208at 208.044 kb on - strand, within Dsui_0208at 208.090 kb on + strand, within Dsui_0208at 208.133 kb on + strand, within Dsui_0208at 208.201 kb on - strand, within Dsui_0208at 208.276 kb on + strand, within Dsui_0208at 208.358 kb on - strand, within Dsui_0208at 208.526 kb on + strand, within Dsui_0208at 208.541 kb on + strandat 208.547 kb on - strand, within Dsui_0208at 208.618 kb on - strand, within Dsui_0208at 208.631 kb on + strand, within Dsui_0208at 208.691 kb on + strand, within Dsui_0208at 208.691 kb on + strand, within Dsui_0208at 208.816 kb on + strand, within Dsui_0208at 209.068 kb on + strandat 209.083 kb on + strand, within Dsui_0208at 209.238 kb on - strand, within Dsui_0208at 209.302 kb on - strand, within Dsui_0208at 209.410 kb on + strand, within Dsui_0208at 209.418 kb on - strand, within Dsui_0208at 209.445 kb on + strand, within Dsui_0208at 209.453 kb on - strand, within Dsui_0208at 209.499 kb on - strand, within Dsui_0208at 209.624 kb on - strand, within Dsui_0208at 209.767 kb on + strandat 209.767 kb on + strand, within Dsui_0208at 209.767 kb on + strand, within Dsui_0208at 209.775 kb on - strand, within Dsui_0208at 209.775 kb on - strand, within Dsui_0208at 209.787 kb on + strand, within Dsui_0208at 209.847 kb on + strand, within Dsui_0208at 209.847 kb on + strand, within Dsui_0208at 209.855 kb on - strand, within Dsui_0208at 209.933 kb on - strand, within Dsui_0208at 209.981 kb on - strand, within Dsui_0208at 210.023 kb on + strand, within Dsui_0208at 210.030 kb on - strand, within Dsui_0208at 210.123 kb on - strand, within Dsui_0208at 210.138 kb on - strand, within Dsui_0208at 210.363 kb on - strandat 210.432 kb on + strandat 210.452 kb on + strandat 210.477 kb on - strandat 210.704 kb on + strand, within Dsui_0209at 210.832 kb on + strand, within Dsui_0209at 210.971 kb on + strandat 211.087 kb on + strand, within Dsui_0209at 211.258 kb on - strand, within Dsui_0209at 211.304 kb on + strand, within Dsui_0209at 211.462 kb on - strand, within Dsui_0209

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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205,989 + Dsui_0206 0.49 +0.7
206,066 - Dsui_0206 0.56 +1.4
206,246 - Dsui_0206 0.72 -0.1
206,291 + Dsui_0206 0.76 -1.3
206,403 + Dsui_0206 0.86 +0.3
206,403 + Dsui_0206 0.86 -0.2
206,411 - Dsui_0206 0.87 +0.6
206,595 - Dsui_0207 0.10 +0.9
206,628 + Dsui_0207 0.18 -1.5
206,777 + Dsui_0207 0.53 -1.8
207,020 + -1.0
207,232 + -0.3
207,340 + Dsui_0208 0.10 +0.5
207,390 + Dsui_0208 0.12 -0.3
207,398 - Dsui_0208 0.12 +0.4
207,398 - Dsui_0208 0.12 -1.4
207,408 - Dsui_0208 0.12 +0.3
207,430 + -0.5
207,430 + Dsui_0208 0.13 -0.4
207,430 + Dsui_0208 0.13 +0.5
207,430 + Dsui_0208 0.13 -0.0
207,527 - Dsui_0208 0.15 -0.3
207,556 - Dsui_0208 0.16 +0.0
207,596 - Dsui_0208 0.17 -0.8
207,620 - Dsui_0208 0.18 -0.2
207,655 - Dsui_0208 0.19 -0.5
207,655 - Dsui_0208 0.19 -1.0
207,717 + Dsui_0208 0.21 -0.1
207,718 + +1.8
207,748 + +0.5
207,764 + Dsui_0208 0.22 +0.4
207,892 + Dsui_0208 0.26 -1.4
207,911 + Dsui_0208 0.26 -1.8
207,936 - Dsui_0208 0.27 +1.1
208,044 - Dsui_0208 0.30 -0.2
208,090 + Dsui_0208 0.31 +0.5
208,133 + Dsui_0208 0.32 +0.1
208,201 - Dsui_0208 0.34 -0.5
208,276 + Dsui_0208 0.36 -0.1
208,358 - Dsui_0208 0.39 -1.0
208,526 + Dsui_0208 0.43 -1.8
208,541 + +1.5
208,547 - Dsui_0208 0.44 -0.0
208,618 - Dsui_0208 0.46 -0.5
208,631 + Dsui_0208 0.46 +0.6
208,691 + Dsui_0208 0.48 +0.0
208,691 + Dsui_0208 0.48 -0.1
208,816 + Dsui_0208 0.52 -0.4
209,068 + +0.5
209,083 + Dsui_0208 0.59 -1.3
209,238 - Dsui_0208 0.63 -1.2
209,302 - Dsui_0208 0.65 -0.0
209,410 + Dsui_0208 0.68 -0.4
209,418 - Dsui_0208 0.68 -0.3
209,445 + Dsui_0208 0.69 +0.3
209,453 - Dsui_0208 0.69 -0.5
209,499 - Dsui_0208 0.71 +1.1
209,624 - Dsui_0208 0.74 +0.2
209,767 + +1.1
209,767 + Dsui_0208 0.78 -0.1
209,767 + Dsui_0208 0.78 +0.0
209,775 - Dsui_0208 0.79 -0.2
209,775 - Dsui_0208 0.79 -0.7
209,787 + Dsui_0208 0.79 +0.0
209,847 + Dsui_0208 0.81 +0.1
209,847 + Dsui_0208 0.81 +1.0
209,855 - Dsui_0208 0.81 +0.0
209,933 - Dsui_0208 0.83 -0.8
209,981 - Dsui_0208 0.84 -0.5
210,023 + Dsui_0208 0.85 -1.2
210,030 - Dsui_0208 0.86 -0.8
210,123 - Dsui_0208 0.88 -0.3
210,138 - Dsui_0208 0.89 +0.1
210,363 - -0.6
210,432 + +0.2
210,452 + +0.5
210,477 - -0.4
210,704 + Dsui_0209 0.15 +0.7
210,832 + Dsui_0209 0.27 +0.8
210,971 + +0.3
211,087 + Dsui_0209 0.50 -0.9
211,258 - Dsui_0209 0.66 +0.2
211,304 + Dsui_0209 0.70 +0.6
211,462 - Dsui_0209 0.85 -2.5

Or see this region's nucleotide sequence