Strain Fitness in Dechlorosoma suillum PS around Dsui_0099

Experiment: Anaero. lactate (C), chlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0096 and Dsui_0097 are separated by 119 nucleotidesDsui_0097 and Dsui_0098 are separated by 88 nucleotidesDsui_0098 and Dsui_0099 are separated by 3 nucleotidesDsui_0099 and Dsui_0100 overlap by 4 nucleotidesDsui_0100 and Dsui_0101 are separated by 166 nucleotides Dsui_0096: Dsui_0096 - methyl-accepting chemotaxis protein, at 95,373 to 97,190 _0096 Dsui_0097: Dsui_0097 - putative metal-binding protein, at 97,310 to 97,750 _0097 Dsui_0098: Dsui_0098 - Uncharacterized protein family UPF0057, at 97,839 to 98,033 _0098 Dsui_0099: Dsui_0099 - putative periplasmic or secreted lipoprotein, at 98,037 to 98,696 _0099 Dsui_0100: Dsui_0100 - phosphoheptose isomerase, at 98,693 to 99,286 _0100 Dsui_0101: Dsui_0101 - exonuclease, DNA polymerase III, epsilon subunit family, at 99,453 to 100,919 _0101 Position (kb) 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 97.057 kb on - strandat 97.057 kb on - strandat 97.072 kb on + strandat 97.249 kb on + strandat 97.381 kb on - strand, within Dsui_0097at 97.442 kb on - strandat 97.444 kb on + strand, within Dsui_0097at 97.473 kb on + strand, within Dsui_0097at 97.473 kb on + strand, within Dsui_0097at 97.478 kb on + strand, within Dsui_0097at 97.535 kb on - strand, within Dsui_0097at 97.535 kb on - strand, within Dsui_0097at 97.535 kb on - strand, within Dsui_0097at 97.540 kb on - strand, within Dsui_0097at 97.576 kb on - strand, within Dsui_0097at 97.618 kb on + strand, within Dsui_0097at 97.626 kb on - strand, within Dsui_0097at 97.687 kb on - strandat 97.709 kb on - strandat 97.739 kb on + strandat 97.744 kb on + strandat 97.744 kb on + strandat 97.744 kb on + strandat 97.744 kb on + strandat 97.752 kb on - strandat 98.004 kb on + strand, within Dsui_0098at 98.066 kb on + strandat 98.066 kb on + strandat 98.098 kb on + strandat 98.106 kb on - strand, within Dsui_0099at 98.158 kb on - strand, within Dsui_0099at 98.213 kb on + strand, within Dsui_0099at 98.243 kb on - strand, within Dsui_0099at 98.407 kb on + strand, within Dsui_0099at 98.407 kb on + strand, within Dsui_0099at 98.530 kb on - strand, within Dsui_0099at 98.710 kb on + strandat 99.298 kb on - strandat 99.339 kb on - strandat 99.423 kb on - strandat 99.423 kb on - strandat 99.423 kb on - strandat 99.423 kb on - strandat 99.431 kb on + strandat 99.454 kb on - strandat 99.504 kb on + strandat 99.512 kb on - strandat 99.512 kb on - strandat 99.589 kb on - strandat 99.594 kb on + strandat 99.651 kb on - strand, within Dsui_0101

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), chlorate electron acceptor
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97,057 - -0.1
97,057 - -0.2
97,072 + +0.5
97,249 + +0.2
97,381 - Dsui_0097 0.16 +0.8
97,442 - +1.5
97,444 + Dsui_0097 0.30 +0.5
97,473 + Dsui_0097 0.37 +0.1
97,473 + Dsui_0097 0.37 -0.5
97,478 + Dsui_0097 0.38 +0.2
97,535 - Dsui_0097 0.51 +0.1
97,535 - Dsui_0097 0.51 +0.3
97,535 - Dsui_0097 0.51 +0.1
97,540 - Dsui_0097 0.52 +0.1
97,576 - Dsui_0097 0.60 +0.2
97,618 + Dsui_0097 0.70 -0.3
97,626 - Dsui_0097 0.72 +0.6
97,687 - +0.7
97,709 - +0.3
97,739 + +0.3
97,744 + +0.4
97,744 + +0.5
97,744 + -0.8
97,744 + +0.0
97,752 - -0.0
98,004 + Dsui_0098 0.85 +1.2
98,066 + -0.8
98,066 + +0.9
98,098 + -0.3
98,106 - Dsui_0099 0.10 -0.1
98,158 - Dsui_0099 0.18 -3.0
98,213 + Dsui_0099 0.27 -2.1
98,243 - Dsui_0099 0.31 -4.1
98,407 + Dsui_0099 0.56 -1.8
98,407 + Dsui_0099 0.56 -2.5
98,530 - Dsui_0099 0.75 -2.4
98,710 + -1.0
99,298 - +0.7
99,339 - +0.3
99,423 - +0.3
99,423 - -0.2
99,423 - +0.9
99,423 - -0.1
99,431 + +0.3
99,454 - -0.1
99,504 + +1.1
99,512 - +1.9
99,512 - -0.1
99,589 - +0.2
99,594 + +0.3
99,651 - Dsui_0101 0.13 -0.8

Or see this region's nucleotide sequence