Strain Fitness in Shewanella amazonensis SB2B around Sama_3116

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,694,405	+		Sama_3115	0.62	+0.1
3,694,406	-		Sama_3115	0.62	+1.6
3,694,406	-		Sama_3115	0.62	+2.4
3,694,457	+		Sama_3115	0.64	+0.2
3,694,468	-		Sama_3115	0.65	-1.3
3,694,491	+		Sama_3115	0.66	-0.8
3,694,505	+		Sama_3115	0.66	+0.4
3,694,505	+		Sama_3115	0.66	-0.9
3,694,505	+		Sama_3115	0.66	-1.1
3,694,505	+		Sama_3115	0.66	-0.3
3,694,506	-		Sama_3115	0.66	-0.7
3,694,512	-		Sama_3115	0.66	-1.8
3,694,523	-		Sama_3115	0.67	-0.6
3,694,523	-		Sama_3115	0.67	-0.5
3,694,528	+		Sama_3115	0.67	-0.3
3,694,551	+		Sama_3115	0.68	-1.3
3,694,551	+		Sama_3115	0.68	-1.2
3,694,551	+		Sama_3115	0.68	-0.9
3,694,551	+		Sama_3115	0.68	+0.8
3,694,551	+		Sama_3115	0.68	-0.8
3,694,552	-		Sama_3115	0.68	+1.5
3,694,552	-		Sama_3115	0.68	-1.1
3,694,552	-		Sama_3115	0.68	+1.0
3,694,552	-		Sama_3115	0.68	-1.2
3,694,552	-		Sama_3115	0.68	-0.2
3,694,552	-		Sama_3115	0.68	-0.3
3,694,552	-		Sama_3115	0.68	+1.1
3,694,612	+		Sama_3115	0.71	-2.0
3,694,613	-		Sama_3115	0.71	+0.2
3,694,613	-		Sama_3115	0.71	-2.1
3,694,643	+		Sama_3115	0.72	+0.5
3,694,643	+		Sama_3115	0.72	-0.2
3,694,644	-		Sama_3115	0.72	-0.4
3,694,694	+		Sama_3115	0.74	+0.1
3,694,694	+		Sama_3115	0.74	+1.3
3,694,694	+		Sama_3115	0.74	+0.4
3,694,695	-		Sama_3115	0.74	-1.0
3,694,711	+		Sama_3115	0.75	+0.4
3,694,771	+		Sama_3115	0.78	-0.1
3,694,771	+		Sama_3115	0.78	-0.2
3,694,771	+		Sama_3115	0.78	+0.0
3,694,772	-		Sama_3115	0.78	-1.3
3,694,772	-		Sama_3115	0.78	+0.8
3,694,772	-		Sama_3115	0.78	-1.3
3,694,779	-		Sama_3115	0.78	-3.7
3,694,805	+		Sama_3115	0.79	-0.3
3,694,806	-		Sama_3115	0.79	+1.4
3,694,837	+		Sama_3115	0.81	-1.0
3,694,837	+		Sama_3115	0.81	-0.3
3,694,837	+		Sama_3115	0.81	+1.0
3,694,837	+		Sama_3115	0.81	-0.5
3,694,871	+		Sama_3115	0.82	+0.3
3,694,871	+		Sama_3115	0.82	+2.9
3,694,880	+		Sama_3115	0.82	-0.9
3,694,881	-		Sama_3115	0.82	-0.7
3,694,916	-		Sama_3115	0.84	-0.3
3,694,924	+		Sama_3115	0.84	+0.1
3,694,924	+		Sama_3115	0.84	+1.2
3,694,924	+		Sama_3115	0.84	-0.9
3,694,925	-		Sama_3115	0.84	+0.1
3,694,962	-		Sama_3115	0.86	+0.3
3,694,962	-		Sama_3115	0.86	+0.1
3,695,054	+		Sama_3115	0.90	-0.1
3,695,054	+		Sama_3115	0.90	+0.7
3,695,054	+		Sama_3115	0.90	+0.3
3,695,054	+		Sama_3115	0.90	-0.8
3,695,054	+		Sama_3115	0.90	+0.2
3,695,054	+		Sama_3115	0.90	-0.9
3,695,055	-				+1.2
3,695,083	+				-0.2
3,695,084	-				+0.2
3,695,090	+				-1.6
3,695,090	+				+0.2
3,695,090	+				-0.3
3,695,091	-				+0.2
3,695,091	-				-2.3
3,695,091	-				+1.2
3,695,096	+				+0.9
3,695,180	+				-1.9
3,695,181	-				-1.5
3,695,181	-				+0.2
3,695,202	+				-0.8
3,695,203	-				-0.0
3,695,206	+				-1.9
3,695,307	-				+1.2
3,695,336	+				+0.5
3,695,344	+				+0.9
3,695,355	+				+1.8
3,695,355	+				-1.3
3,695,355	+				+0.4
3,695,355	+				+0.4
3,695,355	+				-1.8
3,695,355	+				+0.0
3,695,355	+				+0.3
3,695,356	-				-1.6
3,695,357	+				-0.9
3,695,357	+				+1.0
3,695,357	+				+0.7
3,695,357	+				-2.3
3,695,398	+				-0.2
3,695,399	-				-0.8
3,695,399	-				+1.2
3,695,400	+				+0.1
3,695,401	-				-0.4
3,695,499	+		Sama_3116	0.16	+0.6
3,695,500	-		Sama_3116	0.16	-2.0
3,695,500	-		Sama_3116	0.16	-1.0
3,695,500	-		Sama_3116	0.16	+1.0
3,695,529	-		Sama_3116	0.19	-0.8
3,695,554	+		Sama_3116	0.22	+0.4
3,695,616	+		Sama_3116	0.29	-0.5
3,695,616	+		Sama_3116	0.29	+0.5
3,695,627	+		Sama_3116	0.30	+1.7
3,695,647	+		Sama_3116	0.32	-1.8
3,695,647	+		Sama_3116	0.32	+0.5
3,695,647	+		Sama_3116	0.32	+1.7
3,695,647	+		Sama_3116	0.32	+1.0
3,695,648	-		Sama_3116	0.33	-1.0
3,695,648	-		Sama_3116	0.33	-0.2
3,695,648	-		Sama_3116	0.33	-0.2
3,695,648	-		Sama_3116	0.33	-0.2
3,695,724	+		Sama_3116	0.41	-1.6
3,695,740	+		Sama_3116	0.43	-2.1
3,695,740	+		Sama_3116	0.43	+1.4
3,695,740	+		Sama_3116	0.43	+0.9
3,695,740	+		Sama_3116	0.43	-0.6
3,695,740	+		Sama_3116	0.43	-0.0
3,695,741	-		Sama_3116	0.43	-0.9
3,695,762	+		Sama_3116	0.46	+1.4
3,695,762	+		Sama_3116	0.46	+0.1
3,695,762	+		Sama_3116	0.46	-0.2
3,695,762	+		Sama_3116	0.46	+1.2
3,695,762	+		Sama_3116	0.46	-1.8
3,695,762	+		Sama_3116	0.46	+0.1
3,695,762	+		Sama_3116	0.46	-0.8
3,695,762	+		Sama_3116	0.46	-2.7
3,695,762	+		Sama_3116	0.46	-0.9
3,695,763	-		Sama_3116	0.46	+0.4
3,695,763	-		Sama_3116	0.46	-1.5
3,695,763	-		Sama_3116	0.46	-0.5
3,695,763	-		Sama_3116	0.46	+0.4
3,695,763	-		Sama_3116	0.46	-0.1
3,695,763	-		Sama_3116	0.46	+1.1
3,695,763	-		Sama_3116	0.46	-0.3
3,695,764	+		Sama_3116	0.46	+0.2
3,695,764	+		Sama_3116	0.46	+0.2
3,695,764	+		Sama_3116	0.46	+0.2
3,695,764	+		Sama_3116	0.46	+1.2
3,695,764	+		Sama_3116	0.46	+0.8
3,695,764	+		Sama_3116	0.46	+0.2
3,695,765	-		Sama_3116	0.46	-0.0
3,695,765	-		Sama_3116	0.46	+1.1
3,695,765	-		Sama_3116	0.46	-1.7
3,695,765	-		Sama_3116	0.46	+2.0
3,695,765	-		Sama_3116	0.46	+0.5
3,695,766	+		Sama_3116	0.46	+0.5
3,695,766	+		Sama_3116	0.46	+0.4
3,695,767	-		Sama_3116	0.46	+1.0
3,695,784	+		Sama_3116	0.48	-0.1
3,695,784	+		Sama_3116	0.48	+0.7
3,695,784	+		Sama_3116	0.48	+0.1
3,695,800	+		Sama_3116	0.50	-1.6
3,695,801	-		Sama_3116	0.50	-0.6
3,695,820	+		Sama_3116	0.52	+0.3
3,695,820	+		Sama_3116	0.52	+1.9
3,695,821	-		Sama_3116	0.52	-1.8
3,695,870	-		Sama_3116	0.58	-0.1
3,695,870	-		Sama_3116	0.58	-0.2
3,695,870	-		Sama_3116	0.58	-1.2
3,695,883	+		Sama_3116	0.59	+0.2
3,695,883	+		Sama_3116	0.59	-0.3
3,695,889	-		Sama_3116	0.60	-0.3
3,696,006	+		Sama_3116	0.73	+0.4
3,696,006	+		Sama_3116	0.73	+0.5
3,696,006	+		Sama_3116	0.73	-0.5
3,696,006	+		Sama_3116	0.73	-0.6
3,696,006	+		Sama_3116	0.73	+1.2
3,696,007	-		Sama_3116	0.73	-1.8
3,696,007	-		Sama_3116	0.73	+0.8
3,696,007	-		Sama_3116	0.73	+0.2
3,696,007	-		Sama_3116	0.73	-2.9
3,696,007	-		Sama_3116	0.73	-0.8
3,696,030	-		Sama_3116	0.76	-1.2
3,696,065	-		Sama_3116	0.80	-0.2
3,696,120	-		Sama_3116	0.86	-0.3
3,696,136	-		Sama_3116	0.88	-0.8
3,696,141	+		Sama_3116	0.89	-1.2
3,696,141	+		Sama_3116	0.89	+0.4
3,696,142	-		Sama_3116	0.89	-0.9
3,696,142	-		Sama_3116	0.89	-1.4
3,696,166	+				-1.1
3,696,166	+				+1.7
3,696,167	-				-1.5
3,696,176	+				-2.0
3,696,177	-				-0.8
3,696,177	-				-0.3
3,696,214	+				+0.7
3,696,214	+				+0.5
3,696,215	-				-0.7
3,696,236	+				+2.7
3,696,247	+				-0.1
3,696,247	+				+0.2
3,696,247	+				-1.6
3,696,247	+				+1.1
3,696,247	+				+0.2
3,696,247	+				+0.7
3,696,247	+				-0.1
3,696,247	+				+0.2
3,696,247	+				-0.1
3,696,248	-				+0.2
3,696,248	-				-1.6
3,696,248	-				-0.9
3,696,250	+				-0.7
3,696,251	-				-0.3
3,696,370	-		Sama_3117	0.28	+1.1
3,696,418	+		Sama_3117	0.38	-2.9
3,696,418	+		Sama_3117	0.38	+2.7
3,696,418	+		Sama_3117	0.38	+1.2
3,696,419	-		Sama_3117	0.38	-3.6
3,696,419	-		Sama_3117	0.38	+0.4
3,696,419	-		Sama_3117	0.38	-0.3
3,696,428	+		Sama_3117	0.40	-1.2
3,696,428	+		Sama_3117	0.40	-0.3
3,696,428	+		Sama_3117	0.40	+0.2
3,696,429	-		Sama_3117	0.40	-1.7
3,696,481	+		Sama_3117	0.51	+0.4
3,696,482	-		Sama_3117	0.51	-1.0
3,696,498	-		Sama_3117	0.55	-1.7
3,696,537	+		Sama_3117	0.63	-0.9
3,696,538	-		Sama_3117	0.63	-2.0
3,696,538	-		Sama_3117	0.63	-0.6
3,696,659	+		Sama_3117	0.88	-1.1
3,696,690	+				-0.3
3,696,690	+				+0.1
3,696,691	-				+0.2
3,696,691	-				+0.8
3,696,691	-				+1.7
3,696,691	-				-1.6
3,696,691	-				+2.4
3,696,691	-				+0.0
3,696,700	+				-0.3
3,696,700	+				-1.0
3,696,700	+				-0.2
3,696,700	+				+2.1
3,696,701	-				+0.0
3,696,701	-				+0.0
3,696,705	+				-0.3
3,696,706	-				+0.2
3,696,706	-				-1.0
3,696,706	-				-1.0
3,696,706	-				+1.2
3,696,742	+				-0.3
3,696,742	+				-1.4
3,696,743	-				+0.6
3,696,743	-				-0.6
3,696,743	-				+1.1
3,696,743	-				+0.4
3,696,765	+				-0.5
3,696,765	+				+0.2
3,696,765	+				-0.3
3,696,805	-				-1.1
3,696,824	+				-1.6
3,696,885	+		Sama_3118	0.17	-0.3
3,696,917	+		Sama_3118	0.24	+0.2
3,696,917	+		Sama_3118	0.24	-1.5
3,696,917	+		Sama_3118	0.24	+0.5
3,696,917	+		Sama_3118	0.24	-0.2
3,696,918	-		Sama_3118	0.24	-0.8
3,696,970	+		Sama_3118	0.35	-1.3
3,696,970	+		Sama_3118	0.35	-1.7
3,696,971	-		Sama_3118	0.35	+0.8
3,696,971	-		Sama_3118	0.35	+0.6
3,696,971	-		Sama_3118	0.35	-0.5
3,696,974	+		Sama_3118	0.36	-1.6
3,696,974	+		Sama_3118	0.36	+0.2
3,696,975	-		Sama_3118	0.36	+0.4
3,696,975	-		Sama_3118	0.36	-0.1
3,696,975	-		Sama_3118	0.36	-1.2
3,696,975	-		Sama_3118	0.36	+0.8
3,697,001	+		Sama_3118	0.42	-0.3
3,697,001	+		Sama_3118	0.42	-0.3
3,697,001	+		Sama_3118	0.42	+0.5
3,697,001	+		Sama_3118	0.42	-0.4
3,697,001	+		Sama_3118	0.42	+0.2
3,697,001	+		Sama_3118	0.42	+1.4
3,697,002	-		Sama_3118	0.42	-0.7
3,697,002	-		Sama_3118	0.42	-0.5
3,697,002	-		Sama_3118	0.42	-2.2
3,697,002	-		Sama_3118	0.42	-1.2
3,697,002	-		Sama_3118	0.42	+1.2
3,697,002	-		Sama_3118	0.42	+0.2
3,697,002	-		Sama_3118	0.42	+1.8
3,697,002	-		Sama_3118	0.42	-0.5
3,697,002	-		Sama_3118	0.42	+0.6
3,697,063	+		Sama_3118	0.55	-1.3
3,697,064	-		Sama_3118	0.55	-0.8
3,697,064	-		Sama_3118	0.55	+0.1
3,697,064	-		Sama_3118	0.55	-1.2
3,697,064	-		Sama_3118	0.55	+0.7
3,697,069	+		Sama_3118	0.56	-0.8
3,697,069	+		Sama_3118	0.56	-1.8
3,697,070	-		Sama_3118	0.56	+1.0
3,697,070	-		Sama_3118	0.56	-2.3
3,697,084	+		Sama_3118	0.59	+1.6
3,697,090	+		Sama_3118	0.61	-0.7
3,697,091	-		Sama_3118	0.61	+0.5
3,697,141	-		Sama_3118	0.71	+2.8
3,697,141	-		Sama_3118	0.71	-0.6
3,697,147	+		Sama_3118	0.73	-0.8
3,697,157	+		Sama_3118	0.75	-0.1
3,697,157	+		Sama_3118	0.75	-0.5
3,697,157	+		Sama_3118	0.75	-0.3
3,697,158	-		Sama_3118	0.75	+0.4
3,697,158	-		Sama_3118	0.75	-1.1
3,697,158	-		Sama_3118	0.75	-2.2
3,697,158	-		Sama_3118	0.75	-0.5
3,697,201	+		Sama_3118	0.84	-0.2
3,697,202	-		Sama_3118	0.84	+0.8
3,697,202	-		Sama_3118	0.84	-0.3
3,697,215	+		Sama_3118	0.87	+1.1
3,697,215	+		Sama_3118	0.87	+0.4
3,697,216	-		Sama_3118	0.87	-0.8
3,697,233	+				-1.6
3,697,233	+				-1.1
3,697,233	+				+1.2
3,697,233	+				+0.5
3,697,233	+				-2.2
3,697,233	+				-2.2
3,697,233	+				-1.2
3,697,233	+				+0.2
3,697,233	+				+0.1
3,697,233	+				-1.8
3,697,233	+				-1.9
3,697,233	+				+0.1
3,697,233	+				+0.2
3,697,234	-				+0.5
3,697,234	-				-1.8
3,697,234	-				+0.3
3,697,234	-				-0.1
3,697,234	-				-0.9
3,697,234	-				+0.8
3,697,236	+				+0.0
3,697,236	+				-0.8
3,697,236	+				+0.7
3,697,236	+				+2.0
3,697,236	+				-0.3
3,697,236	+				+0.6
3,697,237	-				+1.2
3,697,237	-				-2.2
3,697,237	-				+0.6
3,697,237	-				+0.9
3,697,237	-				+0.2
3,697,237	-				+0.2
3,697,237	-				+0.9
3,697,237	-				+1.7