Strain Fitness in Shewanella amazonensis SB2B around Sama_2925

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,479,382	+		Sama_2924	0.55	+0.1
3,479,446	-		Sama_2924	0.59	+1.5
3,479,472	+		Sama_2924	0.60	+0.2
3,479,473	-		Sama_2924	0.60	-1.2
3,479,473	-		Sama_2924	0.60	+1.1
3,479,473	-		Sama_2924	0.60	+1.3
3,479,473	-		Sama_2924	0.60	+0.1
3,479,473	-		Sama_2924	0.60	-0.2
3,479,473	-		Sama_2924	0.60	-1.2
3,479,473	-		Sama_2924	0.60	+0.1
3,479,473	-		Sama_2924	0.60	-0.9
3,479,475	+		Sama_2924	0.60	+0.7
3,479,475	+		Sama_2924	0.60	+0.5
3,479,475	+		Sama_2924	0.60	+0.8
3,479,475	+		Sama_2924	0.60	-0.5
3,479,475	+		Sama_2924	0.60	+0.3
3,479,476	-		Sama_2924	0.60	+0.1
3,479,476	-		Sama_2924	0.60	+0.5
3,479,523	-		Sama_2924	0.63	+1.7
3,479,523	-		Sama_2924	0.63	+2.7
3,479,538	+		Sama_2924	0.64	+1.4
3,479,539	-		Sama_2924	0.64	+1.1
3,479,543	+		Sama_2924	0.64	-1.5
3,479,543	+		Sama_2924	0.64	-0.5
3,479,578	+		Sama_2924	0.66	+1.6
3,479,578	+		Sama_2924	0.66	-0.5
3,479,578	+		Sama_2924	0.66	+1.4
3,479,579	-		Sama_2924	0.66	+0.1
3,479,579	-		Sama_2924	0.66	-0.4
3,479,579	-		Sama_2924	0.66	-0.1
3,479,630	+		Sama_2924	0.69	-1.9
3,479,636	+		Sama_2924	0.69	-0.1
3,479,636	+		Sama_2924	0.69	-0.1
3,479,636	+		Sama_2924	0.69	-0.1
3,479,636	+		Sama_2924	0.69	-1.1
3,479,636	+		Sama_2924	0.69	+0.9
3,479,636	+		Sama_2924	0.69	-1.7
3,479,637	-		Sama_2924	0.69	+1.5
3,479,637	-		Sama_2924	0.69	+0.6
3,479,637	-		Sama_2924	0.69	+0.3
3,479,637	-		Sama_2924	0.69	-1.9
3,479,640	+		Sama_2924	0.70	-1.2
3,479,640	+		Sama_2924	0.70	+1.6
3,479,640	+		Sama_2924	0.70	+0.3
3,479,640	+		Sama_2924	0.70	+0.1
3,479,640	+		Sama_2924	0.70	-1.7
3,479,640	+		Sama_2924	0.70	+0.8
3,479,640	+		Sama_2924	0.70	+0.3
3,479,640	+		Sama_2924	0.70	-0.5
3,479,640	+		Sama_2924	0.70	-1.0
3,479,641	-		Sama_2924	0.70	-0.0
3,479,642	+		Sama_2924	0.70	-0.5
3,479,642	+		Sama_2924	0.70	+0.7
3,479,642	+		Sama_2924	0.70	+0.9
3,479,642	+		Sama_2924	0.70	-0.2
3,479,642	+		Sama_2924	0.70	+1.1
3,479,642	+		Sama_2924	0.70	+0.5
3,479,642	+		Sama_2924	0.70	+1.5
3,479,642	+		Sama_2924	0.70	+0.5
3,479,642	+		Sama_2924	0.70	+1.1
3,479,642	+		Sama_2924	0.70	-0.8
3,479,642	+		Sama_2924	0.70	+0.5
3,479,643	-		Sama_2924	0.70	-1.4
3,479,643	-		Sama_2924	0.70	-0.3
3,479,643	-		Sama_2924	0.70	-0.5
3,479,643	-		Sama_2924	0.70	-0.2
3,479,643	-		Sama_2924	0.70	-3.0
3,479,697	-		Sama_2924	0.73	-0.5
3,479,817	+		Sama_2924	0.80	-1.2
3,479,818	-		Sama_2924	0.80	+0.2
3,479,818	-		Sama_2924	0.80	+0.1
3,479,828	+		Sama_2924	0.80	-3.4
3,479,828	+		Sama_2924	0.80	+0.1
3,479,829	-		Sama_2924	0.80	-0.6
3,479,829	-		Sama_2924	0.80	-1.1
3,479,831	+		Sama_2924	0.80	+0.5
3,479,831	+		Sama_2924	0.80	+1.1
3,479,831	+		Sama_2924	0.80	+1.5
3,479,831	+		Sama_2924	0.80	+0.9
3,479,832	-		Sama_2924	0.80	+1.7
3,479,832	-		Sama_2924	0.80	-1.2
3,479,832	-		Sama_2924	0.80	+0.4
3,479,832	-		Sama_2924	0.80	+2.5
3,479,832	-		Sama_2924	0.80	+1.1
3,479,832	-		Sama_2924	0.80	-1.9
3,479,876	+		Sama_2924	0.83	+2.1
3,479,876	+		Sama_2924	0.83	-1.2
3,479,877	-		Sama_2924	0.83	-0.1
3,479,889	+		Sama_2924	0.84	-1.2
3,479,889	+		Sama_2924	0.84	-0.3
3,479,889	+		Sama_2924	0.84	+0.3
3,479,889	+		Sama_2924	0.84	+0.5
3,480,164	+				+0.5
3,480,165	-				+1.8
3,480,178	+				-0.7
3,480,179	-				+0.7
3,480,179	-				-0.3
3,480,181	+				+0.1
3,480,182	-				+0.9
3,480,184	+				+0.4
3,480,184	+				-1.1
3,480,196	+				-1.2
3,480,196	+				+2.1
3,480,196	+				+0.5
3,480,196	+				+0.3
3,480,196	+				-0.6
3,480,196	+				-1.0
3,480,197	-				-0.1
3,480,198	+				-1.2
3,480,198	+				+0.1
3,480,198	+				+0.5
3,480,198	+				-2.3
3,480,198	+				-0.9
3,480,198	+				-1.3
3,480,198	+				-0.2
3,480,199	-				-1.3
3,480,199	-				-0.0
3,480,199	-				+1.0
3,480,207	+				-0.4
3,480,207	+				+0.8
3,480,207	+				-1.8
3,480,207	+				-0.5
3,480,207	+				-0.3
3,480,207	+				-0.7
3,480,207	+				-2.0
3,480,208	-				-0.4
3,480,208	-				+1.8
3,480,208	-				-0.2
3,480,208	-				-1.1
3,480,208	-				-0.6
3,480,208	-				-0.5
3,480,208	-				+1.2
3,480,239	+				-0.5
3,480,240	-				-2.0
3,480,242	+				-1.2
3,480,243	-				-0.5
3,480,243	-				+0.1
3,480,268	-				+1.0
3,480,317	+				+0.5
3,480,317	+				-1.2
3,480,317	+				+0.1
3,480,317	+				-0.4
3,480,317	+				+0.8
3,480,317	+				+1.1
3,480,317	+				+0.7
3,480,376	+				-3.0
3,480,376	+				-0.4
3,480,376	+				+0.3
3,480,376	+				+0.3
3,480,377	-				+0.3
3,480,377	-				+0.1
3,480,385	+				-0.5
3,480,489	+		Sama_2925	0.27	-0.7
3,480,490	-		Sama_2925	0.27	-0.5
3,480,490	-		Sama_2925	0.27	-1.1
3,480,509	+		Sama_2925	0.31	+0.4
3,480,509	+		Sama_2925	0.31	-0.2
3,480,510	-		Sama_2925	0.32	-0.7
3,480,510	-		Sama_2925	0.32	-0.4
3,480,510	-		Sama_2925	0.32	+1.0
3,480,569	+		Sama_2925	0.46	-2.4
3,480,569	+		Sama_2925	0.46	+0.5
3,480,569	+		Sama_2925	0.46	-1.7
3,480,569	+		Sama_2925	0.46	+4.1
3,480,569	+		Sama_2925	0.46	-0.1
3,480,569	+		Sama_2925	0.46	+0.1
3,480,569	+		Sama_2925	0.46	-0.9
3,480,569	+		Sama_2925	0.46	-1.0
3,480,569	+		Sama_2925	0.46	-2.6
3,480,570	-		Sama_2925	0.46	-0.2
3,480,570	-		Sama_2925	0.46	-1.5
3,480,605	+		Sama_2925	0.54	-0.5
3,480,605	+		Sama_2925	0.54	-1.3
3,480,605	+		Sama_2925	0.54	+0.1
3,480,606	-		Sama_2925	0.55	+0.1
3,480,628	+		Sama_2925	0.60	+0.7
3,480,629	-		Sama_2925	0.60	-0.2
3,480,629	-		Sama_2925	0.60	-0.7
3,480,680	+		Sama_2925	0.72	+1.1
3,480,681	-		Sama_2925	0.72	-1.1
3,480,681	-		Sama_2925	0.72	+0.0
3,480,685	+		Sama_2925	0.73	-0.1
3,480,686	-		Sama_2925	0.74	+1.1
3,480,686	-		Sama_2925	0.74	-2.2
3,480,686	-		Sama_2925	0.74	-0.7
3,480,686	-		Sama_2925	0.74	+1.1
3,480,735	+		Sama_2925	0.85	-0.2
3,480,735	+		Sama_2925	0.85	+0.3
3,480,744	+		Sama_2925	0.87	-1.2
3,480,744	+		Sama_2925	0.87	+0.0
3,480,745	-		Sama_2925	0.88	+0.1
3,480,745	-		Sama_2925	0.88	-0.5
3,480,745	-		Sama_2925	0.88	+0.4
3,480,745	-		Sama_2925	0.88	-0.4
3,480,846	+				+1.1
3,480,846	+				-0.7
3,480,848	+				+0.4
3,481,017	-		Sama_2926	0.25	+0.5
3,481,055	-		Sama_2926	0.30	-1.3
3,481,055	-		Sama_2926	0.30	-0.6
3,481,161	-		Sama_2926	0.46	-0.3
3,481,161	-		Sama_2926	0.46	+0.3
3,481,297	-		Sama_2926	0.66	-1.3
3,481,356	+		Sama_2926	0.74	-0.2
3,481,365	+		Sama_2926	0.75	+0.8
3,481,366	-		Sama_2926	0.76	+0.8
3,481,366	-		Sama_2926	0.76	+0.8
3,481,366	-		Sama_2926	0.76	+0.3
3,481,406	-		Sama_2926	0.81	-0.5
3,481,406	-		Sama_2926	0.81	-0.4
3,481,412	+		Sama_2926	0.82	+2.1
3,481,447	-		Sama_2926	0.87	-1.2
3,481,447	-		Sama_2926	0.87	+0.1
3,481,447	-		Sama_2926	0.87	+0.3
3,481,461	+		Sama_2926	0.89	-1.7
3,481,461	+		Sama_2926	0.89	+0.2
3,481,461	+		Sama_2926	0.89	-0.2
3,481,482	+				+0.4
3,481,502	+				+0.1
3,481,503	-				+0.0
3,481,503	-				-2.2
3,481,503	-				+0.0
3,481,526	-				+0.1
3,481,526	-				-2.9
3,481,535	+				-0.4
3,481,535	+				-0.1
3,481,536	-				+0.0
3,481,536	-				-1.4
3,481,536	-				-0.1
3,481,536	-				-0.3
3,481,581	+		Sama_2927	0.11	+0.3
3,481,581	+		Sama_2927	0.11	-0.0
3,481,581	+		Sama_2927	0.11	-0.7
3,481,582	-		Sama_2927	0.11	-0.7
3,481,582	-		Sama_2927	0.11	+0.1
3,481,665	-		Sama_2927	0.30	-3.1
3,481,665	-		Sama_2927	0.30	-0.1
3,481,685	+		Sama_2927	0.35	+0.1
3,481,685	+		Sama_2927	0.35	+2.3
3,481,699	+		Sama_2927	0.38	-0.4
3,481,699	+		Sama_2927	0.38	+0.4
3,481,699	+		Sama_2927	0.38	+1.3
3,481,699	+		Sama_2927	0.38	-1.3
3,481,700	-		Sama_2927	0.38	+1.1
3,481,700	-		Sama_2927	0.38	+0.5
3,481,700	-		Sama_2927	0.38	-0.7
3,481,700	-		Sama_2927	0.38	+1.2
3,481,782	+		Sama_2927	0.57	-1.0
3,481,782	+		Sama_2927	0.57	+0.9
3,481,782	+		Sama_2927	0.57	-1.5
3,481,783	-		Sama_2927	0.58	-0.6
3,481,783	-		Sama_2927	0.58	+0.9
3,481,783	-		Sama_2927	0.58	+1.5