Strain Fitness in Shewanella amazonensis SB2B around Sama_2824

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,362,545	+		Sama_2822	0.90	+1.5
3,362,545	+		Sama_2822	0.90	+0.9
3,362,545	+		Sama_2822	0.90	+0.1
3,362,545	+		Sama_2822	0.90	+1.2
3,362,546	-		Sama_2822	0.90	-1.1
3,362,546	-		Sama_2822	0.90	-0.5
3,362,552	+				+0.9
3,362,552	+				+0.9
3,362,553	-				+1.5
3,362,553	-				+0.8
3,362,553	-				-0.1
3,362,553	-				-2.5
3,362,641	+				+0.2
3,362,661	+				-0.9
3,362,662	-				-1.2
3,362,740	+				-0.1
3,362,747	+				+0.2
3,362,748	-				+0.3
3,362,861	+				-0.5
3,362,861	+				+0.8
3,362,862	-				-1.0
3,362,862	-				-0.3
3,362,891	+				-0.7
3,362,892	-				-1.2
3,362,908	+				-2.3
3,362,908	+				-0.9
3,362,908	+				+2.0
3,362,908	+				-0.2
3,362,908	+				-1.5
3,362,909	-				-2.5
3,362,909	-				-1.1
3,362,909	-				-2.1
3,362,909	-				+1.1
3,362,909	-				-0.9
3,362,909	-				+1.2
3,362,909	-				-0.0
3,362,918	+				-1.0
3,362,918	+				-2.5
3,362,918	+				+0.2
3,362,918	+				+0.1
3,362,918	+				-0.3
3,362,919	-				+0.8
3,362,919	-				-1.7
3,362,919	-				-1.4
3,362,919	-				+0.3
3,362,919	-				-1.5
3,362,922	+				-0.0
3,362,922	+				-2.7
3,362,922	+				-1.7
3,362,922	+				+1.5
3,362,922	+				+0.8
3,362,922	+				-1.2
3,362,923	-				+0.5
3,362,923	-				-1.9
3,362,923	-				-1.9
3,362,923	-				-1.2
3,362,923	-				-0.5
3,362,923	-				+1.0
3,362,923	-				-0.3
3,362,923	-				-1.9
3,362,923	-				+1.1
3,362,923	-				-0.8
3,362,930	-				+0.6
3,362,961	-				+1.1
3,362,966	+				-0.7
3,362,966	+				-0.5
3,362,966	+				-0.9
3,362,967	-				-0.4
3,362,979	+				-1.1
3,362,979	+				-2.4
3,362,980	-				-0.0
3,362,980	-				+0.7
3,363,022	+		Sama_2823	0.11	+0.0
3,363,034	+		Sama_2823	0.14	+0.4
3,363,074	+		Sama_2823	0.24	+1.4
3,363,074	+		Sama_2823	0.24	+0.2
3,363,074	+		Sama_2823	0.24	-0.2
3,363,074	+		Sama_2823	0.24	+2.0
3,363,074	+		Sama_2823	0.24	-1.5
3,363,075	-		Sama_2823	0.24	+1.6
3,363,075	-		Sama_2823	0.24	+1.5
3,363,075	-		Sama_2823	0.24	-0.7
3,363,075	-		Sama_2823	0.24	-2.1
3,363,143	+		Sama_2823	0.40	+1.0
3,363,143	+		Sama_2823	0.40	-0.1
3,363,143	+		Sama_2823	0.40	-0.7
3,363,144	-		Sama_2823	0.41	+1.5
3,363,144	-		Sama_2823	0.41	-0.1
3,363,144	-		Sama_2823	0.41	+1.0
3,363,144	-		Sama_2823	0.41	+0.3
3,363,144	-		Sama_2823	0.41	+0.3
3,363,144	-		Sama_2823	0.41	+2.0
3,363,200	-		Sama_2823	0.54	+0.9
3,363,200	-		Sama_2823	0.54	+0.7
3,363,210	+		Sama_2823	0.57	-0.4
3,363,211	-		Sama_2823	0.57	-1.2
3,363,250	+		Sama_2823	0.67	-0.5
3,363,282	+		Sama_2823	0.75	+1.1
3,363,282	+		Sama_2823	0.75	+0.3
3,363,283	-		Sama_2823	0.75	-1.1
3,363,283	-		Sama_2823	0.75	+0.9
3,363,292	+		Sama_2823	0.77	-0.9
3,363,292	+		Sama_2823	0.77	-1.7
3,363,293	-		Sama_2823	0.77	+0.3
3,363,313	+		Sama_2823	0.82	+1.7
3,363,314	-		Sama_2823	0.82	-0.7
3,363,314	-		Sama_2823	0.82	+1.1
3,363,314	-		Sama_2823	0.82	-1.2
3,363,314	-		Sama_2823	0.82	+0.5
3,363,390	+				-3.4
3,363,391	-				-0.5
3,363,415	+				-0.5
3,363,415	+				+0.3
3,363,415	+				+1.0
3,363,415	+				-1.1
3,363,416	-				-0.4
3,363,416	-				-0.7
3,363,447	+				+0.3
3,363,448	-				+1.1
3,363,980	+				+0.9
3,363,980	+				-0.7
3,363,981	-				-1.2
3,363,981	-				+0.4
3,363,981	-				+2.1
3,363,981	-				-0.1
3,363,981	-				-1.5
3,363,982	+				-0.9
3,363,982	+				-0.5
3,363,982	+				+0.3
3,363,982	+				+1.3
3,363,982	+				-2.5
3,363,982	+				-2.2
3,363,982	+				-1.6
3,363,982	+				-0.9
3,363,982	+				+1.1
3,363,983	-				-1.7
3,363,983	-				-0.1
3,363,983	-				-0.5
3,363,983	-				+0.0
3,363,983	-				+1.5
3,363,983	-				+1.1
3,363,983	-				-0.1
3,363,983	-				-0.9
3,363,983	-				-1.7
3,364,005	-				+1.1
3,364,051	-		Sama_2825	0.15	-0.5
3,364,075	+		Sama_2825	0.21	+0.8
3,364,075	+		Sama_2825	0.21	-2.1
3,364,144	-		Sama_2825	0.35	-1.5
3,364,144	-		Sama_2825	0.35	-1.7
3,364,144	-		Sama_2825	0.35	-0.0
3,364,144	-		Sama_2825	0.35	-1.5
3,364,146	+		Sama_2825	0.36	-0.5
3,364,146	+		Sama_2825	0.36	-1.7
3,364,146	+		Sama_2825	0.36	-1.9
3,364,147	-		Sama_2825	0.36	-1.5
3,364,147	-		Sama_2825	0.36	+0.1
3,364,147	-		Sama_2825	0.36	+0.6
3,364,147	-		Sama_2825	0.36	-0.5
3,364,147	-		Sama_2825	0.36	+1.5
3,364,154	+		Sama_2825	0.37	-0.4
3,364,154	+		Sama_2825	0.37	-0.2
3,364,154	+		Sama_2825	0.37	-2.7
3,364,155	-		Sama_2825	0.38	-3.4
3,364,155	-		Sama_2825	0.38	+0.4
3,364,155	-		Sama_2825	0.38	-0.0
3,364,177	-		Sama_2825	0.42	+1.9
3,364,177	-		Sama_2825	0.42	+0.3
3,364,231	+		Sama_2825	0.54	+0.5
3,364,231	+		Sama_2825	0.54	+0.1
3,364,232	-		Sama_2825	0.54	+0.9
3,364,237	+		Sama_2825	0.55	-2.2
3,364,238	-		Sama_2825	0.55	+1.3
3,364,286	-		Sama_2825	0.66	-1.0
3,364,304	-		Sama_2825	0.69	+0.0
3,364,347	-		Sama_2825	0.79	+0.2
3,364,351	+		Sama_2825	0.79	-2.1
3,364,351	+		Sama_2825	0.79	-0.1
3,364,351	+		Sama_2825	0.79	-0.7
3,364,352	-		Sama_2825	0.80	-0.5
3,364,352	-		Sama_2825	0.80	-1.6
3,364,372	-		Sama_2825	0.84	-1.6
3,364,372	-		Sama_2825	0.84	+1.1
3,364,372	-		Sama_2825	0.84	-0.4
3,364,372	-		Sama_2825	0.84	+0.5
3,364,372	-		Sama_2825	0.84	-0.8
3,364,375	+		Sama_2825	0.85	-0.5
3,364,376	-		Sama_2825	0.85	-0.8
3,364,376	-		Sama_2825	0.85	-1.7
3,364,376	-		Sama_2825	0.85	-1.8
3,364,376	-		Sama_2825	0.85	-0.2
3,364,376	-		Sama_2825	0.85	+1.6
3,364,426	+				-0.7
3,364,432	-				+1.3
3,364,439	-				-0.3
3,364,474	-				-0.2
3,364,482	-				-0.7
3,364,485	+				-1.2
3,364,486	-				-1.7
3,364,486	-				-0.5
3,364,486	-				+0.1
3,364,486	-				+0.9
3,364,486	-				+0.1
3,364,486	-				+0.3
3,364,486	-				+1.4
3,364,533	-		Sama_2826	0.12	-0.9
3,364,533	-		Sama_2826	0.12	+0.5
3,364,533	-		Sama_2826	0.12	-0.6
3,364,545	-		Sama_2826	0.13	-1.7
3,364,545	-		Sama_2826	0.13	-0.2
3,364,655	-		Sama_2826	0.28	+0.1
3,364,752	-		Sama_2826	0.41	-0.2
3,364,916	-		Sama_2826	0.62	+0.8
3,364,916	-		Sama_2826	0.62	+1.1