Strain Fitness in Shewanella amazonensis SB2B around Sama_2646

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,169,432	-		Sama_2645	0.28	-3.0
3,169,432	-		Sama_2645	0.28	-3.6
3,169,480	+		Sama_2645	0.35	-3.9
3,169,481	-		Sama_2645	0.35	-0.3
3,169,520	+		Sama_2645	0.40	-2.3
3,169,520	+		Sama_2645	0.40	-1.5
3,169,521	-		Sama_2645	0.40	-3.4
3,169,521	-		Sama_2645	0.40	-1.5
3,169,582	+		Sama_2645	0.48	-2.0
3,169,582	+		Sama_2645	0.48	-0.5
3,169,641	+		Sama_2645	0.56	-1.5
3,169,641	+		Sama_2645	0.56	-2.5
3,169,649	-		Sama_2645	0.57	-1.5
3,169,748	+		Sama_2645	0.70	-1.5
3,169,749	-		Sama_2645	0.70	-2.7
3,169,749	-		Sama_2645	0.70	+0.7
3,169,789	+		Sama_2645	0.75	-1.5
3,169,790	-		Sama_2645	0.75	-3.2
3,169,790	-		Sama_2645	0.75	-2.7
3,169,790	-		Sama_2645	0.75	-3.5
3,169,790	-		Sama_2645	0.75	-3.3
3,169,790	-		Sama_2645	0.75	-3.7
3,169,840	-		Sama_2645	0.82	-1.5
3,169,875	+		Sama_2645	0.86	-0.5
3,169,876	-		Sama_2645	0.86	-2.7
3,169,876	-		Sama_2645	0.86	-1.9
3,169,886	-		Sama_2645	0.88	-3.2
3,169,908	+				-3.2
3,169,909	-				+0.3
3,169,911	+				-1.3
3,169,936	-				-1.3
3,169,938	+				-2.3
3,169,939	-				-4.7
3,169,939	-				-2.7
3,169,939	-				-1.8
3,169,939	-				-1.0
3,169,939	-				-2.6
3,169,939	-				-2.5
3,169,956	+				-1.0
3,169,956	+				-1.5
3,169,957	-				-1.0
3,169,980	+				-1.3
3,169,980	+				-2.3
3,169,980	+				-1.1
3,169,980	+				-1.5
3,169,980	+				-4.2
3,169,980	+				-2.8
3,169,980	+				-1.8
3,169,981	-				-2.5
3,169,981	-				-3.5
3,169,981	-				-2.5
3,169,981	-				-2.0
3,169,981	-				-1.4
3,169,981	-				+0.0
3,169,981	-				-2.4
3,169,981	-				-2.3
3,169,981	-				-4.2
3,169,981	-				-0.7
3,169,981	-				-1.8
3,169,981	-				-0.5
3,169,981	-				-0.5
3,169,981	-				-2.1
3,169,981	-				-1.5
3,169,981	-				-2.3
3,169,981	-				-0.5
3,169,981	-				-2.1
3,170,065	+				-4.4
3,170,080	+				-1.7
3,170,089	+				+3.4
3,170,125	-				+2.7
3,170,161	+				+2.3
3,170,161	+				+3.9
3,170,161	+				+1.8
3,170,162	-				+3.0
3,170,165	+				+1.8
3,170,165	+				+1.0
3,170,165	-				+1.6
3,170,165	+				+1.0
3,170,166	-				+2.1
3,170,166	-				+2.2
3,170,264	-				+1.6
3,170,274	-				+1.2
3,170,338	+				-0.4
3,170,339	-				+0.8
3,170,509	-		Sama_2646	0.16	+1.0
3,170,512	-		Sama_2646	0.17	+1.8
3,170,512	-		Sama_2646	0.17	+1.0
3,170,512	-		Sama_2646	0.17	+0.9
3,170,512	-		Sama_2646	0.17	-0.1
3,170,512	-		Sama_2646	0.17	-0.8
3,170,512	-		Sama_2646	0.17	+3.6
3,170,624	-		Sama_2646	0.37	+2.8
3,170,624	-		Sama_2646	0.37	+1.1
3,170,624	-		Sama_2646	0.37	+1.5
3,170,714	-		Sama_2646	0.54	+1.4
3,170,714	-		Sama_2646	0.54	+2.4
3,170,714	-		Sama_2646	0.54	+0.9
3,170,717	+		Sama_2646	0.54	+1.4
3,170,717	+		Sama_2646	0.54	+1.8
3,170,717	+		Sama_2646	0.54	+2.4
3,170,718	-		Sama_2646	0.54	+1.6
3,170,718	-		Sama_2646	0.54	+0.7
3,170,718	-		Sama_2646	0.54	-1.5
3,170,718	-		Sama_2646	0.54	+1.5
3,170,718	-		Sama_2646	0.54	+2.0
3,170,718	-		Sama_2646	0.54	+2.2
3,170,718	-		Sama_2646	0.54	+2.5
3,170,718	-		Sama_2646	0.54	+1.7
3,170,718	-		Sama_2646	0.54	+2.0
3,170,718	-		Sama_2646	0.54	+1.7
3,170,718	-		Sama_2646	0.54	+0.9
3,170,718	-		Sama_2646	0.54	+3.2
3,170,720	-		Sama_2646	0.55	+1.5
3,170,804	-		Sama_2646	0.70	+2.9
3,170,804	-		Sama_2646	0.70	+1.6
3,170,804	-		Sama_2646	0.70	+2.6
3,170,804	-		Sama_2646	0.70	+0.8
3,170,804	-		Sama_2646	0.70	+0.1
3,170,804	-		Sama_2646	0.70	+1.4
3,170,804	-		Sama_2646	0.70	+0.8
3,170,804	-		Sama_2646	0.70	+2.4
3,170,804	-		Sama_2646	0.70	+2.3
3,170,804	-		Sama_2646	0.70	+1.5
3,170,879	-		Sama_2646	0.84	+2.8
3,170,879	-		Sama_2646	0.84	+1.3
3,170,879	-		Sama_2646	0.84	+2.0
3,170,879	-		Sama_2646	0.84	+0.5
3,170,996	-				-0.1
3,170,996	-				+1.2
3,171,011	-				+1.1
3,171,011	-				+1.6
3,171,011	-				+1.7
3,171,022	+				+3.0
3,171,022	+				+3.2
3,171,023	-				+0.3
3,171,023	-				+1.4
3,171,023	-				-2.0
3,171,023	-				+0.6
3,171,042	-				+0.9
3,171,116	+				+2.3
3,171,189	-				+0.8
3,171,194	+				+1.2
3,171,216	+				-0.2
3,171,218	+				-1.5
3,171,218	+				-0.5
3,171,218	+				-0.4
3,171,218	+				-1.8
3,171,218	+				-0.5
3,171,218	+				+0.8
3,171,219	-				-1.1
3,171,219	-				-1.4
3,171,238	-				+2.0
3,171,238	-				-1.3
3,171,243	-				-2.3
3,171,293	+				-1.0
3,171,293	+				-1.8
3,171,293	+				+0.7
3,171,293	+				-2.0
3,171,293	+				+0.0
3,171,293	+				+3.4
3,171,293	+				-0.1
3,171,294	-				-1.8
3,171,294	-				-0.3
3,171,294	-				-0.8
3,171,294	-				-1.4
3,171,294	-				-2.3
3,171,312	+				-1.4
3,171,382	+				+0.5
3,171,383	-				-0.7
3,171,506	+		Sama_2647	0.19	-1.3
3,171,507	-		Sama_2647	0.19	-0.1
3,171,507	-		Sama_2647	0.19	-1.1
3,171,604	+		Sama_2647	0.26	-2.0
3,171,632	+		Sama_2647	0.28	+0.2
3,171,633	-		Sama_2647	0.28	-0.4
3,171,657	+		Sama_2647	0.30	-2.0
3,171,658	-		Sama_2647	0.30	-0.2
3,171,686	+		Sama_2647	0.32	-0.8
3,171,769	+		Sama_2647	0.39	-1.0
3,171,769	+		Sama_2647	0.39	-1.0
3,171,769	+		Sama_2647	0.39	-2.1
3,171,770	-		Sama_2647	0.39	-0.7
3,171,781	+		Sama_2647	0.40	-0.1
3,171,781	+		Sama_2647	0.40	+1.0
3,171,781	+		Sama_2647	0.40	-0.0
3,171,781	+		Sama_2647	0.40	-0.0
3,171,781	+		Sama_2647	0.40	-0.2
3,171,782	-		Sama_2647	0.40	-0.2
3,171,795	+		Sama_2647	0.41	+0.5
3,171,920	+		Sama_2647	0.50	-0.8
3,171,920	+		Sama_2647	0.50	+0.0
3,171,920	+		Sama_2647	0.50	+0.2
3,171,921	-		Sama_2647	0.50	-2.0