Strain Fitness in Shewanella amazonensis SB2B around Sama_2638

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,159,766	+		Sama_2637	0.37	-2.9
3,159,766	+		Sama_2637	0.37	-2.5
3,159,766	+		Sama_2637	0.37	-2.0
3,159,766	+		Sama_2637	0.37	-2.0
3,159,766	+		Sama_2637	0.37	-1.8
3,159,767	-		Sama_2637	0.37	-3.8
3,159,767	-		Sama_2637	0.37	-2.5
3,159,767	-		Sama_2637	0.37	-2.4
3,159,767	-		Sama_2637	0.37	-4.2
3,159,767	-		Sama_2637	0.37	-2.0
3,159,767	-		Sama_2637	0.37	-3.2
3,159,767	-		Sama_2637	0.37	-2.0
3,159,767	-		Sama_2637	0.37	-3.2
3,159,784	+		Sama_2637	0.39	-3.6
3,159,784	+		Sama_2637	0.39	-2.1
3,159,784	+		Sama_2637	0.39	-1.8
3,159,784	+		Sama_2637	0.39	+0.0
3,159,785	-		Sama_2637	0.39	-1.9
3,159,785	-		Sama_2637	0.39	-2.1
3,159,785	-		Sama_2637	0.39	-3.2
3,159,785	-		Sama_2637	0.39	-2.0
3,159,785	-		Sama_2637	0.39	-1.3
3,159,785	-		Sama_2637	0.39	-3.0
3,159,785	-		Sama_2637	0.39	-4.1
3,159,956	+		Sama_2637	0.50	-0.8
3,159,956	+		Sama_2637	0.50	-3.1
3,159,957	-		Sama_2637	0.51	-0.5
3,159,957	-		Sama_2637	0.51	-3.0
3,160,056	+		Sama_2637	0.57	-1.5
3,160,057	-		Sama_2637	0.57	-2.1
3,160,138	-		Sama_2637	0.63	-2.7
3,160,138	-		Sama_2637	0.63	-2.3
3,160,138	-		Sama_2637	0.63	-2.4
3,160,225	-		Sama_2637	0.69	-3.9
3,160,241	+		Sama_2637	0.70	-4.0
3,160,241	+		Sama_2637	0.70	+1.0
3,160,242	-		Sama_2637	0.70	-2.0
3,160,291	+		Sama_2637	0.74	-1.5
3,160,291	+		Sama_2637	0.74	-2.1
3,160,291	+		Sama_2637	0.74	-1.0
3,160,291	+		Sama_2637	0.74	-2.4
3,160,293	+		Sama_2637	0.74	-3.9
3,160,293	+		Sama_2637	0.74	-1.7
3,160,293	+		Sama_2637	0.74	-1.3
3,160,293	+		Sama_2637	0.74	-0.5
3,160,293	+		Sama_2637	0.74	-3.9
3,160,294	-		Sama_2637	0.74	-1.3
3,160,294	-		Sama_2637	0.74	-1.8
3,160,294	-		Sama_2637	0.74	-1.3
3,160,294	-		Sama_2637	0.74	-2.4
3,160,294	-		Sama_2637	0.74	-1.5
3,160,294	-		Sama_2637	0.74	-3.7
3,160,294	-		Sama_2637	0.74	-2.6
3,160,339	+		Sama_2637	0.77	-1.5
3,160,339	+		Sama_2637	0.77	-3.2
3,160,339	+		Sama_2637	0.77	-1.8
3,160,340	-		Sama_2637	0.77	-2.3
3,160,469	+		Sama_2637	0.86	-0.5
3,160,628	+				-2.5
3,160,628	+				-2.5
3,160,685	+				-3.2
3,160,685	+				-2.1
3,160,685	+				-4.0
3,160,686	-				-0.7
3,160,686	-				-2.9
3,160,686	-				+0.9
3,160,710	+				-2.3
3,160,710	+				-3.4
3,160,754	+				-0.5
3,160,754	+				-3.3
3,160,755	-				-2.3
3,160,755	-				-3.3
3,160,755	-				-2.8
3,160,755	-				-1.8
3,160,758	-				+0.0
3,160,758	-				-1.5
3,160,758	-				-2.4
3,160,758	-				-1.3
3,160,860	+		Sama_2638	0.10	-2.3
3,160,861	-		Sama_2638	0.10	-3.2
3,160,898	+		Sama_2638	0.13	-0.5
3,160,898	+		Sama_2638	0.13	-2.8
3,160,898	+		Sama_2638	0.13	-1.8
3,160,898	+		Sama_2638	0.13	-3.6
3,160,899	-		Sama_2638	0.13	-0.5
3,160,899	-		Sama_2638	0.13	-1.8
3,160,899	-		Sama_2638	0.13	-2.1
3,160,899	-		Sama_2638	0.13	-2.3
3,160,903	+		Sama_2638	0.14	-1.3
3,160,903	+		Sama_2638	0.14	-1.1
3,160,903	+		Sama_2638	0.14	+0.0
3,160,903	+		Sama_2638	0.14	-1.3
3,160,903	+		Sama_2638	0.14	-1.8
3,160,904	-		Sama_2638	0.14	-1.5
3,160,904	-		Sama_2638	0.14	+1.0
3,160,932	-		Sama_2638	0.16	-3.3
3,160,934	+		Sama_2638	0.16	-2.1
3,160,934	+		Sama_2638	0.16	-1.0
3,160,934	+		Sama_2638	0.16	-1.3
3,160,934	+		Sama_2638	0.16	-3.0
3,160,934	+		Sama_2638	0.16	-3.3
3,160,934	+		Sama_2638	0.16	-1.0
3,160,934	+		Sama_2638	0.16	-3.0
3,160,934	+		Sama_2638	0.16	-1.3
3,160,934	+		Sama_2638	0.16	-2.8
3,160,934	+		Sama_2638	0.16	-2.4
3,160,934	+		Sama_2638	0.16	-3.3
3,160,934	+		Sama_2638	0.16	-2.9
3,160,934	+		Sama_2638	0.16	-1.5
3,160,934	+		Sama_2638	0.16	-1.8
3,160,935	-		Sama_2638	0.16	-3.0
3,160,935	-		Sama_2638	0.16	-0.5
3,160,935	-		Sama_2638	0.16	-2.1
3,160,935	-		Sama_2638	0.16	-3.3
3,160,935	-		Sama_2638	0.16	-2.5
3,160,935	-		Sama_2638	0.16	-3.8
3,160,935	-		Sama_2638	0.16	-3.5
3,160,935	-		Sama_2638	0.16	-3.5
3,160,935	-		Sama_2638	0.16	-2.0
3,160,935	-		Sama_2638	0.16	-1.0
3,160,935	-		Sama_2638	0.16	-3.3
3,160,950	+		Sama_2638	0.17	-3.1
3,160,993	-		Sama_2638	0.21	-2.1
3,161,007	-		Sama_2638	0.22	-4.6
3,161,007	-		Sama_2638	0.22	-1.0
3,161,007	-		Sama_2638	0.22	-2.8
3,161,007	-		Sama_2638	0.22	-2.8
3,161,013	+		Sama_2638	0.22	-4.1
3,161,025	+		Sama_2638	0.23	-1.8
3,161,025	+		Sama_2638	0.23	-1.8
3,161,096	+		Sama_2638	0.29	-2.8
3,161,096	+		Sama_2638	0.29	-2.7
3,161,096	+		Sama_2638	0.29	-2.0
3,161,097	-		Sama_2638	0.29	-3.3
3,161,097	-		Sama_2638	0.29	-1.5
3,161,097	-		Sama_2638	0.29	-1.5
3,161,097	-		Sama_2638	0.29	-0.9
3,161,147	+		Sama_2638	0.33	-1.8
3,161,159	+		Sama_2638	0.34	-2.4
3,161,159	+		Sama_2638	0.34	-0.2
3,161,160	-		Sama_2638	0.34	-2.0
3,161,160	-		Sama_2638	0.34	-2.4
3,161,160	-		Sama_2638	0.34	-2.3
3,161,163	+		Sama_2638	0.34	+1.0
3,161,164	-		Sama_2638	0.34	-1.0
3,161,164	-		Sama_2638	0.34	-3.0
3,161,164	-		Sama_2638	0.34	-2.5
3,161,164	-		Sama_2638	0.34	-2.1
3,161,164	-		Sama_2638	0.34	-2.5
3,161,164	-		Sama_2638	0.34	-4.0
3,161,180	+		Sama_2638	0.35	-0.5
3,161,181	-		Sama_2638	0.35	-1.0
3,161,181	-		Sama_2638	0.35	-4.1
3,161,181	-		Sama_2638	0.35	-1.8
3,161,199	+		Sama_2638	0.37	-1.0
3,161,199	+		Sama_2638	0.37	-1.4
3,161,200	-		Sama_2638	0.37	-1.3
3,161,200	-		Sama_2638	0.37	-1.0
3,161,200	-		Sama_2638	0.37	-2.5
3,161,232	+		Sama_2638	0.39	-2.1
3,161,233	-		Sama_2638	0.39	-3.2
3,161,294	+		Sama_2638	0.44	-1.5
3,161,294	+		Sama_2638	0.44	-3.5
3,161,295	-		Sama_2638	0.44	-2.3
3,161,295	-		Sama_2638	0.44	-2.4
3,161,295	-		Sama_2638	0.44	-1.8
3,161,355	+		Sama_2638	0.49	-2.0
3,161,355	+		Sama_2638	0.49	-3.8
3,161,356	-		Sama_2638	0.49	-3.5
3,161,356	-		Sama_2638	0.49	-1.0
3,161,374	+		Sama_2638	0.50	+0.0
3,161,375	-		Sama_2638	0.50	-2.9
3,161,375	-		Sama_2638	0.50	-1.5
3,161,488	-		Sama_2638	0.59	-3.1
3,161,509	-		Sama_2638	0.61	-4.1
3,161,521	-		Sama_2638	0.62	+0.0
3,161,559	+		Sama_2638	0.65	+1.0
3,161,560	-		Sama_2638	0.65	-1.3
3,161,560	-		Sama_2638	0.65	-3.5
3,161,661	+		Sama_2638	0.73	-2.1
3,161,665	-		Sama_2638	0.73	-3.8
3,161,665	-		Sama_2638	0.73	-3.1
3,161,666	+		Sama_2638	0.73	-1.8
3,161,666	+		Sama_2638	0.73	-3.5
3,161,667	-		Sama_2638	0.73	-0.5
3,161,667	-		Sama_2638	0.73	-3.7
3,161,667	-		Sama_2638	0.73	-2.8
3,161,667	-		Sama_2638	0.73	-1.8
3,161,667	-		Sama_2638	0.73	-2.5
3,161,667	-		Sama_2638	0.73	-2.9
3,161,776	-		Sama_2638	0.82	-3.0
3,161,777	+		Sama_2638	0.82	-4.0
3,161,777	+		Sama_2638	0.82	-3.4
3,161,777	+		Sama_2638	0.82	-5.6
3,161,778	-		Sama_2638	0.82	-3.2
3,161,778	-		Sama_2638	0.82	-2.1
3,161,778	-		Sama_2638	0.82	-1.0
3,161,895	+				-0.5
3,161,896	-				-4.1
3,161,896	-				-0.2
3,161,908	+				-3.8
3,161,908	+				-4.0
3,161,909	-				-2.3
3,161,909	-				-2.5
3,161,909	-				-3.5
3,161,909	-				-1.8
3,161,910	+				-2.7
3,161,911	-				-1.5
3,161,911	-				-1.5
3,161,982	-				-0.9
3,161,982	-				-3.7
3,161,983	+				-1.9
3,161,984	+				-3.5
3,161,984	+				-0.5
3,161,984	+				-2.3
3,161,984	+				-3.3
3,161,984	+				-3.5
3,161,984	+				-2.3
3,161,984	+				-3.5
3,161,985	-				-2.9
3,161,985	-				-3.5
3,161,985	-				-2.3
3,161,985	-				-3.6
3,161,985	-				-2.6
3,161,994	+				-3.9
3,161,994	+				-2.5
3,162,003	+				-1.8
3,162,003	+				-2.4
3,162,003	+				-2.4
3,162,004	-				-0.9
3,162,062	+				-4.1
3,162,062	+				-3.3
3,162,062	+				-1.8
3,162,062	+				-3.8
3,162,062	+				-3.2
3,162,062	+				-2.1
3,162,063	-				-0.9
3,162,063	-				-2.4
3,162,063	-				-1.5
3,162,063	-				-1.6
3,162,085	+				-3.7
3,162,091	+				-0.4
3,162,091	+				-1.8
3,162,091	+				-1.3
3,162,092	-				-0.9
3,162,163	-				+1.1
3,162,163	-				-0.9
3,162,182	+				-1.5
3,162,182	+				-1.2
3,162,183	-				-0.5
3,162,227	+				-3.9
3,162,227	+				-4.1
3,162,285	+		Sama_2639	0.13	-3.1
3,162,298	+		Sama_2639	0.14	-0.8
3,162,298	+		Sama_2639	0.14	-3.8
3,162,299	-		Sama_2639	0.14	-3.9
3,162,299	-		Sama_2639	0.14	-3.5
3,162,299	-		Sama_2639	0.14	-2.9
3,162,325	+		Sama_2639	0.18	-2.3
3,162,325	+		Sama_2639	0.18	-1.8
3,162,325	+		Sama_2639	0.18	-5.1
3,162,325	+		Sama_2639	0.18	-2.4
3,162,325	+		Sama_2639	0.18	-1.8
3,162,325	+		Sama_2639	0.18	-3.3
3,162,326	-		Sama_2639	0.18	-2.9
3,162,490	-		Sama_2639	0.38	-2.9
3,162,551	+		Sama_2639	0.45	-2.9
3,162,552	-		Sama_2639	0.45	-2.1
3,162,552	-		Sama_2639	0.45	-1.9
3,162,595	-		Sama_2639	0.51	-0.9
3,162,595	-		Sama_2639	0.51	-2.5
3,162,663	+		Sama_2639	0.59	-1.9
3,162,679	-		Sama_2639	0.61	-3.3
3,162,694	+		Sama_2639	0.63	-0.5
3,162,695	-		Sama_2639	0.63	-4.3
3,162,763	-		Sama_2639	0.71	-1.5
3,162,857	+		Sama_2639	0.83	+0.1
3,162,858	-		Sama_2639	0.83	-3.6
3,162,941	+				-2.1
3,162,941	+				-2.9
3,162,941	+				-2.1
3,162,941	+				-3.9