Strain Fitness in Shewanella amazonensis SB2B around Sama_2457

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,963,878	-				+0.6
2,963,918	-				-0.1
2,963,956	-				+1.0
2,963,956	-				+1.1
2,963,976	-				+0.5
2,964,003	+				-0.1
2,964,081	+				-0.7
2,964,081	+				+0.8
2,964,081	+				-1.5
2,964,081	+				-1.1
2,964,081	+				-2.4
2,964,082	-				+1.9
2,964,082	-				-1.1
2,964,082	-				+0.6
2,964,082	-				-1.9
2,964,082	-				-1.2
2,964,118	+				-0.4
2,964,118	+				-2.0
2,964,139	+				+0.1
2,964,165	+				-1.2
2,964,166	-				+0.1
2,964,173	+				-0.8
2,964,173	+				+0.4
2,964,173	+				-0.2
2,964,173	+				+0.3
2,964,174	-				-0.6
2,964,174	-				+0.2
2,964,174	-				+0.2
2,964,174	-				+2.0
2,964,174	-				+1.0
2,964,175	+				-0.2
2,964,175	+				-0.6
2,964,175	+				-0.5
2,964,175	+				+0.6
2,964,175	+				-2.8
2,964,175	+				-1.0
2,964,176	-				-0.7
2,964,176	-				-1.1
2,964,176	-				+0.2
2,964,176	-				+0.7
2,964,176	-				+0.2
2,964,176	-				-2.3
2,964,181	+				-0.3
2,964,181	+				-0.8
2,964,181	+				-0.3
2,964,181	+				+0.0
2,964,182	-				-2.1
2,964,182	-				-0.6
2,964,182	-				-0.8
2,964,182	-				+3.7
2,964,182	-				-1.3
2,964,182	-				+0.3
2,964,182	-				-2.7
2,964,202	+		Sama_2456	0.13	+0.1
2,964,202	+		Sama_2456	0.13	-1.1
2,964,203	-		Sama_2456	0.13	+0.2
2,964,203	-		Sama_2456	0.13	-0.6
2,964,240	+		Sama_2456	0.24	-2.0
2,964,342	+		Sama_2456	0.52	+0.8
2,964,420	+		Sama_2456	0.73	-1.3
2,964,421	-		Sama_2456	0.74	-0.1
2,964,467	+		Sama_2456	0.86	+0.5
2,964,467	+		Sama_2456	0.86	-0.4
2,964,467	+		Sama_2456	0.86	-0.4
2,964,467	+		Sama_2456	0.86	+0.6
2,964,467	+		Sama_2456	0.86	-1.7
2,964,468	-		Sama_2456	0.87	+0.6
2,964,468	-		Sama_2456	0.87	-0.1
2,964,482	+				-0.5
2,964,483	-				-0.3
2,964,491	-				-1.6
2,964,491	-				+0.1
2,964,491	-				+0.9
2,964,555	+				+0.2
2,964,556	-				-0.1
2,964,556	-				-0.7
2,964,556	-				-0.7
2,964,556	-				-1.7
2,964,556	-				+0.8
2,964,556	-				-1.7
2,964,556	-				-0.5
2,964,556	-				+0.1
2,964,586	-				-0.5
2,964,610	-				+0.6
2,964,753	+				-0.1
2,964,753	+				+0.8
2,964,754	-				-1.4
2,964,754	-				-0.3
2,964,840	+				-0.1
2,964,840	+				+1.4
2,964,841	-				+0.0
2,964,842	+				-0.4
2,964,857	-				-0.7
2,964,857	-				+0.7
2,964,862	+				+1.9
2,964,862	+				-0.4
2,964,863	-				-0.4
2,964,863	-				-0.1
2,964,968	+				+0.5
2,964,968	+				-1.1
2,964,969	-				-0.7
2,964,993	+				+0.6
2,964,994	-				+0.6
2,965,027	+		Sama_2457	0.11	+0.2
2,965,027	+		Sama_2457	0.11	-0.8
2,965,068	+		Sama_2457	0.14	-0.1
2,965,069	-		Sama_2457	0.14	-0.1
2,965,077	+		Sama_2457	0.14	-0.8
2,965,077	+		Sama_2457	0.14	-1.1
2,965,077	+		Sama_2457	0.14	-0.1
2,965,077	+		Sama_2457	0.14	+0.2
2,965,077	+		Sama_2457	0.14	+0.7
2,965,077	+		Sama_2457	0.14	+1.2
2,965,077	+		Sama_2457	0.14	+0.3
2,965,077	+		Sama_2457	0.14	+0.2
2,965,077	+		Sama_2457	0.14	+0.9
2,965,077	+		Sama_2457	0.14	-1.9
2,965,077	+		Sama_2457	0.14	-2.3
2,965,077	+		Sama_2457	0.14	-0.7
2,965,078	-		Sama_2457	0.14	+0.4
2,965,078	-		Sama_2457	0.14	+0.9
2,965,078	-		Sama_2457	0.14	-0.6
2,965,078	-		Sama_2457	0.14	+0.5
2,965,078	-		Sama_2457	0.14	-0.6
2,965,078	-		Sama_2457	0.14	-3.6
2,965,078	-		Sama_2457	0.14	-0.7
2,965,078	-		Sama_2457	0.14	-0.1
2,965,078	-		Sama_2457	0.14	+0.1
2,965,078	-		Sama_2457	0.14	-0.6
2,965,078	-		Sama_2457	0.14	-0.7
2,965,102	+		Sama_2457	0.16	+0.9
2,965,102	+		Sama_2457	0.16	+0.9
2,965,102	+		Sama_2457	0.16	-1.9
2,965,103	-		Sama_2457	0.16	-1.0
2,965,169	+		Sama_2457	0.21	-2.3
2,965,169	+		Sama_2457	0.21	-1.7
2,965,169	+		Sama_2457	0.21	+0.2
2,965,172	+		Sama_2457	0.21	+0.5
2,965,178	-		Sama_2457	0.21	-1.7
2,965,205	+		Sama_2457	0.23	-1.0
2,965,206	-		Sama_2457	0.23	-0.4
2,965,236	+		Sama_2457	0.25	+1.2
2,965,236	+		Sama_2457	0.25	-1.0
2,965,236	+		Sama_2457	0.25	-1.2
2,965,236	+		Sama_2457	0.25	+0.0
2,965,236	+		Sama_2457	0.25	-0.9
2,965,236	+		Sama_2457	0.25	-0.4
2,965,237	-		Sama_2457	0.25	-0.2
2,965,237	-		Sama_2457	0.25	-0.3
2,965,282	+		Sama_2457	0.28	-1.1
2,965,358	+		Sama_2457	0.33	+0.3
2,965,358	+		Sama_2457	0.33	-0.7
2,965,358	+		Sama_2457	0.33	-1.2
2,965,359	-		Sama_2457	0.33	+0.6
2,965,359	-		Sama_2457	0.33	-2.1
2,965,359	-		Sama_2457	0.33	+0.1
2,965,426	+		Sama_2457	0.38	-0.2
2,965,427	-		Sama_2457	0.38	+0.5
2,965,427	-		Sama_2457	0.38	-1.1
2,965,427	-		Sama_2457	0.38	-0.3
2,965,448	-		Sama_2457	0.39	-0.7
2,965,448	-		Sama_2457	0.39	-1.7
2,965,471	+		Sama_2457	0.41	+0.1
2,965,471	+		Sama_2457	0.41	+0.2
2,965,471	+		Sama_2457	0.41	-2.9
2,965,472	-		Sama_2457	0.41	+0.4
2,965,472	-		Sama_2457	0.41	-0.1
2,965,472	-		Sama_2457	0.41	-0.9
2,965,472	-		Sama_2457	0.41	-2.9
2,965,472	-		Sama_2457	0.41	-3.0
2,965,472	-		Sama_2457	0.41	-1.2
2,965,472	-		Sama_2457	0.41	-0.1
2,965,560	+		Sama_2457	0.47	+1.9
2,965,619	+		Sama_2457	0.51	-0.3
2,965,619	+		Sama_2457	0.51	-2.3
2,965,619	+		Sama_2457	0.51	-1.0
2,965,620	-		Sama_2457	0.51	-0.0
2,965,620	-		Sama_2457	0.51	+0.1
2,965,620	-		Sama_2457	0.51	-1.4
2,965,620	-		Sama_2457	0.51	-0.1
2,965,620	-		Sama_2457	0.51	-0.7
2,965,620	-		Sama_2457	0.51	-0.3
2,965,793	+		Sama_2457	0.63	+0.9
2,965,875	+		Sama_2457	0.68	+1.1
2,965,923	+		Sama_2457	0.71	+0.2
2,965,924	-		Sama_2457	0.71	-1.2
2,965,924	-		Sama_2457	0.71	-0.7
2,965,945	+		Sama_2457	0.73	+0.9
2,965,946	-		Sama_2457	0.73	-0.1
2,965,946	-		Sama_2457	0.73	-0.7
2,965,958	+		Sama_2457	0.74	+0.4
2,965,959	+		Sama_2457	0.74	+1.2
2,965,983	+		Sama_2457	0.75	-0.2
2,965,984	-		Sama_2457	0.75	+0.7
2,965,984	-		Sama_2457	0.75	+0.3
2,965,987	+		Sama_2457	0.76	-1.4
2,965,987	+		Sama_2457	0.76	+1.4
2,965,987	+		Sama_2457	0.76	-1.4
2,965,987	+		Sama_2457	0.76	-0.9
2,965,987	+		Sama_2457	0.76	+0.7
2,965,987	+		Sama_2457	0.76	-1.0
2,966,035	+		Sama_2457	0.79	-0.1
2,966,035	+		Sama_2457	0.79	-0.5
2,966,076	-		Sama_2457	0.82	-1.9
2,966,101	+		Sama_2457	0.83	-0.4
2,966,176	+		Sama_2457	0.88	-1.1
2,966,267	+				+0.0
2,966,267	+				-0.7
2,966,268	-				-0.0
2,966,268	-				-0.5
2,966,268	-				+2.9
2,966,277	+				-0.4
2,966,277	+				+1.5
2,966,286	+				-0.9
2,966,306	-				-2.3
2,966,306	-				+0.4
2,966,361	+				-0.7
2,966,361	+				+0.7
2,966,361	+				-0.4
2,966,361	+				+2.9
2,966,362	-				-0.0
2,966,362	-				+0.9
2,966,362	-				+0.7
2,966,362	-				+0.2
2,966,362	-				-0.5
2,966,363	+				-0.2
2,966,363	+				-2.4
2,966,364	-				+0.5
2,966,364	-				-2.7
2,966,391	+				+0.1
2,966,392	-				-0.5
2,966,392	-				-1.7
2,966,392	-				+0.2
2,966,392	-				+0.5
2,966,473	+				-0.0
2,966,473	+				-0.1
2,966,474	-				+0.8
2,966,474	-				+1.3
2,966,536	+				+0.5
2,966,561	+				-0.6
2,966,561	+				-1.4
2,966,568	+				-2.3
2,966,568	+				-2.7
2,966,568	+				-2.0
2,966,568	+				+0.7
2,966,568	+				-0.5
2,966,569	-				+2.2
2,966,569	-				-0.3
2,966,569	-				-1.3
2,966,610	+		Sama_2458	0.13	-0.1
2,966,611	-		Sama_2458	0.13	-1.6
2,966,611	-		Sama_2458	0.13	-3.7
2,966,626	+		Sama_2458	0.14	-0.4
2,966,638	+		Sama_2458	0.15	+0.4
2,966,638	+		Sama_2458	0.15	-0.8
2,966,639	-		Sama_2458	0.15	-1.9
2,966,639	-		Sama_2458	0.15	-2.1
2,966,659	+		Sama_2458	0.17	-2.7
2,966,659	+		Sama_2458	0.17	+0.3
2,966,659	+		Sama_2458	0.17	-0.9
2,966,659	+		Sama_2458	0.17	+0.9
2,966,659	+		Sama_2458	0.17	-0.7
2,966,659	+		Sama_2458	0.17	-0.7
2,966,659	+		Sama_2458	0.17	+0.6
2,966,660	-		Sama_2458	0.17	+0.4
2,966,660	-		Sama_2458	0.17	+0.4
2,966,660	-		Sama_2458	0.17	+1.9
2,966,660	-		Sama_2458	0.17	+0.1
2,966,660	-		Sama_2458	0.17	+1.4
2,966,660	-		Sama_2458	0.17	-1.5
2,966,660	-		Sama_2458	0.17	-0.0
2,966,660	-		Sama_2458	0.17	-0.3
2,966,660	-		Sama_2458	0.17	-0.9
2,966,660	-		Sama_2458	0.17	-1.7
2,966,660	-		Sama_2458	0.17	-1.9
2,966,660	-		Sama_2458	0.17	-0.2
2,966,660	-		Sama_2458	0.17	-1.4
2,966,660	-		Sama_2458	0.17	-0.3
2,966,672	+		Sama_2458	0.18	+0.9
2,966,672	+		Sama_2458	0.18	+0.6
2,966,672	+		Sama_2458	0.18	-0.1
2,966,672	+		Sama_2458	0.18	+0.1
2,966,672	+		Sama_2458	0.18	-0.3
2,966,672	+		Sama_2458	0.18	-2.1
2,966,672	+		Sama_2458	0.18	-0.7
2,966,672	+		Sama_2458	0.18	-0.4
2,966,673	-		Sama_2458	0.18	+0.4
2,966,673	-		Sama_2458	0.18	+0.3
2,966,673	-		Sama_2458	0.18	+0.1
2,966,715	+		Sama_2458	0.21	+0.4
2,966,805	+		Sama_2458	0.28	-0.7
2,966,857	+		Sama_2458	0.31	-0.6
2,966,857	+		Sama_2458	0.31	-1.4
2,966,857	+		Sama_2458	0.31	+0.5
2,966,857	+		Sama_2458	0.31	-2.5
2,966,857	+		Sama_2458	0.31	-1.0
2,966,857	+		Sama_2458	0.31	-0.7
2,966,858	-		Sama_2458	0.32	+0.3
2,966,858	-		Sama_2458	0.32	+0.8
2,966,858	-		Sama_2458	0.32	-1.2
2,966,858	-		Sama_2458	0.32	-2.0
2,966,858	-		Sama_2458	0.32	+3.9
2,966,860	+		Sama_2458	0.32	+0.8
2,966,860	+		Sama_2458	0.32	+0.3
2,966,860	+		Sama_2458	0.32	+0.1
2,966,860	+		Sama_2458	0.32	-1.3
2,966,861	-		Sama_2458	0.32	-1.7
2,966,861	-		Sama_2458	0.32	-0.5
2,966,861	-		Sama_2458	0.32	-0.4
2,966,861	-		Sama_2458	0.32	-0.9
2,966,861	-		Sama_2458	0.32	-0.7
2,966,861	-		Sama_2458	0.32	-1.0
2,966,861	-		Sama_2458	0.32	+0.7
2,966,861	-		Sama_2458	0.32	+0.2
2,966,864	+		Sama_2458	0.32	+0.2
2,966,865	-		Sama_2458	0.32	-2.2
2,966,900	-		Sama_2458	0.35	+1.5
2,966,900	-		Sama_2458	0.35	+0.4
2,966,900	-		Sama_2458	0.35	-1.1
2,966,900	-		Sama_2458	0.35	+0.1
2,966,901	+		Sama_2458	0.35	-0.7
2,966,946	+		Sama_2458	0.38	-1.1
2,966,947	-		Sama_2458	0.38	+0.6
2,967,008	+		Sama_2458	0.43	-0.1
2,967,010	+		Sama_2458	0.43	+1.1
2,967,010	+		Sama_2458	0.43	+0.1
2,967,011	-		Sama_2458	0.43	-0.9
2,967,011	-		Sama_2458	0.43	-1.2
2,967,107	+		Sama_2458	0.50	-0.7
2,967,107	+		Sama_2458	0.50	-1.1
2,967,107	+		Sama_2458	0.50	+0.6
2,967,107	+		Sama_2458	0.50	-0.4
2,967,108	-		Sama_2458	0.50	+2.9
2,967,154	+		Sama_2458	0.54	+0.9
2,967,155	-		Sama_2458	0.54	+1.5
2,967,215	-		Sama_2458	0.58	-0.7
2,967,235	+		Sama_2458	0.60	-1.0
2,967,263	+		Sama_2458	0.62	-0.7
2,967,296	+		Sama_2458	0.64	-1.1
2,967,297	-		Sama_2458	0.65	+0.2