Strain Fitness in Shewanella amazonensis SB2B around Sama_2455

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,961,468	+		Sama_2454	0.73	-1.2
2,961,469	-		Sama_2454	0.73	-0.1
2,961,469	-		Sama_2454	0.73	-1.7
2,961,528	-		Sama_2454	0.76	-0.3
2,961,528	-		Sama_2454	0.76	-0.0
2,961,537	+		Sama_2454	0.76	-3.3
2,961,537	+		Sama_2454	0.76	-0.6
2,961,584	-		Sama_2454	0.78	+2.5
2,961,584	-		Sama_2454	0.78	-0.6
2,961,685	+		Sama_2454	0.83	-0.3
2,961,686	-		Sama_2454	0.83	+0.4
2,961,686	-		Sama_2454	0.83	-0.7
2,961,700	+		Sama_2454	0.83	+0.4
2,961,701	-		Sama_2454	0.83	+0.7
2,961,701	-		Sama_2454	0.83	+1.6
2,961,721	+		Sama_2454	0.84	+0.6
2,961,721	+		Sama_2454	0.84	+1.6
2,961,765	+		Sama_2454	0.86	-1.9
2,961,766	-		Sama_2454	0.86	-0.5
2,961,766	-		Sama_2454	0.86	-0.3
2,961,766	-		Sama_2454	0.86	+0.5
2,961,795	+		Sama_2454	0.88	+0.1
2,961,795	+		Sama_2454	0.88	+1.2
2,961,884	+				-0.2
2,961,885	-				-0.3
2,961,885	-				-1.6
2,961,885	-				-1.0
2,961,997	-				-2.1
2,962,052	-				-3.1
2,962,097	-				-0.9
2,962,097	-				-0.7
2,962,097	-				+0.5
2,962,097	-				-2.7
2,962,282	-				-1.0
2,962,328	+				+0.7
2,962,347	+				-0.4
2,962,347	+				-0.1
2,962,347	+				-0.4
2,962,348	-				+0.1
2,962,411	+				+1.6
2,962,411	+				-0.4
2,962,411	+				-1.4
2,962,412	-				-1.7
2,962,412	-				+0.9
2,962,414	+				+0.5
2,962,414	+				-0.3
2,962,414	+				-0.7
2,962,415	-				-0.1
2,962,447	+				-1.1
2,962,447	+				-0.5
2,962,448	-				+2.9
2,962,448	-				-1.1
2,962,451	+				+0.0
2,962,451	+				-1.1
2,962,451	+				+0.1
2,962,451	+				-0.1
2,962,451	+				+1.5
2,962,451	+				-1.1
2,962,452	-				-1.2
2,962,452	-				-1.3
2,962,452	-				-0.4
2,962,452	-				-0.7
2,962,454	+				-0.7
2,962,454	+				-0.3
2,962,454	+				-0.1
2,962,455	-				+2.3
2,962,528	+				+0.2
2,962,528	+				-0.7
2,962,528	+				-0.0
2,962,528	+				+1.0
2,962,528	+				-0.1
2,962,529	-				-2.3
2,962,529	-				-1.5
2,962,545	-				-3.2
2,962,568	+				-1.9
2,962,580	-		Sama_2455	0.11	-0.7
2,962,585	+		Sama_2455	0.11	+0.6
2,962,585	+		Sama_2455	0.11	-1.7
2,962,585	+		Sama_2455	0.11	-0.1
2,962,586	-		Sama_2455	0.11	+1.6
2,962,586	-		Sama_2455	0.11	+0.5
2,962,589	+		Sama_2455	0.12	+0.1
2,962,589	+		Sama_2455	0.12	-1.1
2,962,589	+		Sama_2455	0.12	+1.1
2,962,589	+		Sama_2455	0.12	+0.5
2,962,589	+		Sama_2455	0.12	-2.7
2,962,590	-		Sama_2455	0.12	+0.4
2,962,590	-		Sama_2455	0.12	-0.4
2,962,590	-		Sama_2455	0.12	+0.9
2,962,590	-		Sama_2455	0.12	-0.7
2,962,629	-		Sama_2455	0.15	+0.5
2,962,654	+		Sama_2455	0.17	+0.3
2,962,655	-		Sama_2455	0.17	-0.3
2,962,809	+		Sama_2455	0.31	+1.5
2,962,823	+		Sama_2455	0.32	+0.1
2,962,823	+		Sama_2455	0.32	-1.1
2,962,862	+		Sama_2455	0.35	+0.3
2,962,862	+		Sama_2455	0.35	+0.3
2,962,862	+		Sama_2455	0.35	-1.0
2,962,862	+		Sama_2455	0.35	+1.0
2,962,863	-		Sama_2455	0.36	-1.9
2,962,863	-		Sama_2455	0.36	+0.2
2,962,863	-		Sama_2455	0.36	-0.3
2,962,863	-		Sama_2455	0.36	+1.7
2,962,863	-		Sama_2455	0.36	-2.2
2,962,863	-		Sama_2455	0.36	+2.1
2,962,865	+		Sama_2455	0.36	+0.2
2,962,866	-		Sama_2455	0.36	+0.0
2,962,866	-		Sama_2455	0.36	+0.2
2,962,925	+		Sama_2455	0.41	-0.1
2,962,928	+		Sama_2455	0.41	-1.2
2,962,928	+		Sama_2455	0.41	-2.9
2,962,928	+		Sama_2455	0.41	-0.2
2,962,928	+		Sama_2455	0.41	-0.1
2,962,928	+		Sama_2455	0.41	+0.2
2,962,928	+		Sama_2455	0.41	+0.4
2,962,928	+		Sama_2455	0.41	+0.5
2,962,929	-		Sama_2455	0.41	-1.9
2,962,929	-		Sama_2455	0.41	+1.1
2,962,929	-		Sama_2455	0.41	+0.6
2,962,929	-		Sama_2455	0.41	-0.2
2,963,058	+		Sama_2455	0.52	-1.1
2,963,058	+		Sama_2455	0.52	-0.5
2,963,058	+		Sama_2455	0.52	-0.3
2,963,058	+		Sama_2455	0.52	-1.1
2,963,058	+		Sama_2455	0.52	+0.7
2,963,058	+		Sama_2455	0.52	+0.1
2,963,058	+		Sama_2455	0.52	-0.8
2,963,059	-		Sama_2455	0.53	-1.1
2,963,059	-		Sama_2455	0.53	+0.6
2,963,059	-		Sama_2455	0.53	-0.4
2,963,059	-		Sama_2455	0.53	+0.1
2,963,059	-		Sama_2455	0.53	+0.1
2,963,059	-		Sama_2455	0.53	+0.3
2,963,059	-		Sama_2455	0.53	-0.1
2,963,059	-		Sama_2455	0.53	+0.2
2,963,059	-		Sama_2455	0.53	-0.2
2,963,059	-		Sama_2455	0.53	-1.1
2,963,059	-		Sama_2455	0.53	+0.2
2,963,059	-		Sama_2455	0.53	-1.1
2,963,059	-		Sama_2455	0.53	+0.1
2,963,059	-		Sama_2455	0.53	+0.0
2,963,118	-		Sama_2455	0.58	+0.6
2,963,118	-		Sama_2455	0.58	-0.4
2,963,127	+		Sama_2455	0.58	-1.4
2,963,127	+		Sama_2455	0.58	-2.3
2,963,127	+		Sama_2455	0.58	-0.4
2,963,127	+		Sama_2455	0.58	+0.9
2,963,127	+		Sama_2455	0.58	-0.3
2,963,127	+		Sama_2455	0.58	-0.7
2,963,184	+		Sama_2455	0.63	-0.7
2,963,232	+		Sama_2455	0.68	+0.5
2,963,233	-		Sama_2455	0.68	-0.9
2,963,243	+		Sama_2455	0.69	-1.4
2,963,268	+		Sama_2455	0.71	-0.3
2,963,269	-		Sama_2455	0.71	+0.0
2,963,291	+		Sama_2455	0.73	-0.3
2,963,310	+		Sama_2455	0.74	+0.2
2,963,311	-		Sama_2455	0.74	+0.9
2,963,311	-		Sama_2455	0.74	-0.7
2,963,311	-		Sama_2455	0.74	+0.1
2,963,311	-		Sama_2455	0.74	-0.4
2,963,322	+		Sama_2455	0.75	-0.8
2,963,323	-		Sama_2455	0.76	-0.6
2,963,323	-		Sama_2455	0.76	-0.6
2,963,323	-		Sama_2455	0.76	-0.9
2,963,383	+		Sama_2455	0.81	+0.4
2,963,452	+		Sama_2455	0.87	+0.7
2,963,543	+				-1.9
2,963,543	+				-1.4
2,963,543	+				-2.4
2,963,544	-				+1.3
2,963,544	-				-0.3
2,963,544	-				+0.9
2,963,544	-				-0.3
2,963,544	-				-0.3
2,963,601	+				+0.3
2,963,666	-				-0.2
2,963,666	-				+2.0
2,963,673	+				-2.4
2,963,673	+				+1.1
2,963,673	+				-1.7
2,963,733	+				-0.6
2,963,733	+				-0.3
2,963,733	+				-2.4
2,963,734	-				-0.3
2,963,734	-				+0.6
2,963,736	+				+0.1
2,963,736	+				+0.9
2,963,736	+				-1.3
2,963,736	+				-0.4
2,963,737	-				-0.1
2,963,737	-				+0.3
2,963,759	+				-0.4
2,963,759	+				-1.7
2,963,760	-				+1.3
2,963,834	+				-1.3
2,963,878	-				+0.6
2,963,918	-				-0.1
2,963,956	-				+1.0
2,963,956	-				+1.1
2,963,976	-				+0.5
2,964,003	+				-0.1
2,964,081	+				-0.7
2,964,081	+				+0.8
2,964,081	+				-1.5
2,964,081	+				-1.1
2,964,081	+				-2.4
2,964,082	-				+1.9
2,964,082	-				-1.1
2,964,082	-				+0.6
2,964,082	-				-1.9
2,964,082	-				-1.2
2,964,118	+				-0.4
2,964,118	+				-2.0
2,964,139	+				+0.1
2,964,165	+				-1.2
2,964,166	-				+0.1
2,964,173	+				-0.8
2,964,173	+				+0.4
2,964,173	+				-0.2
2,964,173	+				+0.3
2,964,174	-				-0.6
2,964,174	-				+0.2
2,964,174	-				+0.2
2,964,174	-				+2.0
2,964,174	-				+1.0
2,964,175	+				-0.2
2,964,175	+				-0.6
2,964,175	+				-0.5
2,964,175	+				+0.6
2,964,175	+				-2.8
2,964,175	+				-1.0
2,964,176	-				-0.7
2,964,176	-				-1.1
2,964,176	-				+0.2
2,964,176	-				+0.7
2,964,176	-				+0.2
2,964,176	-				-2.3
2,964,181	+				-0.3
2,964,181	+				-0.8
2,964,181	+				-0.3
2,964,181	+				+0.0
2,964,182	-				-2.1
2,964,182	-				-0.6
2,964,182	-				-0.8
2,964,182	-				+3.7
2,964,182	-				-1.3
2,964,182	-				+0.3
2,964,182	-				-2.7
2,964,202	+		Sama_2456	0.13	+0.1
2,964,202	+		Sama_2456	0.13	-1.1
2,964,203	-		Sama_2456	0.13	+0.2
2,964,203	-		Sama_2456	0.13	-0.6
2,964,240	+		Sama_2456	0.24	-2.0
2,964,342	+		Sama_2456	0.52	+0.8
2,964,420	+		Sama_2456	0.73	-1.3
2,964,421	-		Sama_2456	0.74	-0.1
2,964,467	+		Sama_2456	0.86	+0.5
2,964,467	+		Sama_2456	0.86	-0.4
2,964,467	+		Sama_2456	0.86	-0.4
2,964,467	+		Sama_2456	0.86	+0.6
2,964,467	+		Sama_2456	0.86	-1.7
2,964,468	-		Sama_2456	0.87	+0.6
2,964,468	-		Sama_2456	0.87	-0.1
2,964,482	+				-0.5
2,964,483	-				-0.3
2,964,491	-				-1.6
2,964,491	-				+0.1
2,964,491	-				+0.9
2,964,555	+				+0.2
2,964,556	-				-0.1
2,964,556	-				-0.7
2,964,556	-				-0.7
2,964,556	-				-1.7
2,964,556	-				+0.8
2,964,556	-				-1.7
2,964,556	-				-0.5
2,964,556	-				+0.1
2,964,586	-				-0.5