Strain Fitness in Shewanella amazonensis SB2B around Sama_2253

Experiment: Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_2251 and Sama_2252 are separated by 0 nucleotidesSama_2252 and Sama_2253 overlap by 4 nucleotidesSama_2253 and Sama_2254 overlap by 11 nucleotides Sama_2251: Sama_2251 - UDP-3-O-(3-hydroxymyristoyl)-like protein (RefSeq), at 2,714,532 to 2,715,392 _2251 Sama_2252: Sama_2252 - hypothetical protein (RefSeq), at 2,715,393 to 2,716,022 _2252 Sama_2253: Sama_2253 - hypothetical protein (RefSeq), at 2,716,019 to 2,717,179 _2253 Sama_2254: Sama_2254 - hypothetical protein (RefSeq), at 2,717,169 to 2,718,371 _2254 Position (kb) 2716 2717 2718Strain fitness (log2 ratio) -1 0 1 2 3 4at 2715.369 kb on - strandat 2715.445 kb on - strandat 2715.450 kb on - strandat 2715.662 kb on - strand, within Sama_2252at 2715.684 kb on + strand, within Sama_2252at 2715.907 kb on - strand, within Sama_2252at 2716.003 kb on - strandat 2716.006 kb on - strandat 2716.011 kb on - strandat 2716.014 kb on - strandat 2716.121 kb on - strandat 2716.227 kb on - strand, within Sama_2253at 2716.227 kb on - strand, within Sama_2253at 2716.272 kb on - strand, within Sama_2253at 2716.272 kb on - strand, within Sama_2253at 2716.347 kb on - strand, within Sama_2253at 2716.456 kb on - strand, within Sama_2253at 2716.722 kb on - strand, within Sama_2253at 2716.722 kb on - strand, within Sama_2253at 2716.988 kb on - strand, within Sama_2253at 2717.070 kb on - strandat 2717.151 kb on + strandat 2717.152 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine
remove
2,715,369 - +2.7
2,715,445 - +0.7
2,715,450 - +2.0
2,715,662 - Sama_2252 0.43 +4.3
2,715,684 + Sama_2252 0.46 +0.7
2,715,907 - Sama_2252 0.82 +0.4
2,716,003 - +3.3
2,716,006 - +0.4
2,716,011 - +1.0
2,716,014 - +1.8
2,716,121 - +1.9
2,716,227 - Sama_2253 0.18 +2.2
2,716,227 - Sama_2253 0.18 +1.0
2,716,272 - Sama_2253 0.22 -0.3
2,716,272 - Sama_2253 0.22 +1.8
2,716,347 - Sama_2253 0.28 +3.7
2,716,456 - Sama_2253 0.38 +3.1
2,716,722 - Sama_2253 0.61 +2.1
2,716,722 - Sama_2253 0.61 +2.1
2,716,988 - Sama_2253 0.83 +0.4
2,717,070 - +2.7
2,717,151 + +1.7
2,717,152 - +1.9

Or see this region's nucleotide sequence