Strain Fitness in Shewanella amazonensis SB2B around Sama_1845

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,247,309	-		Sama_1844	0.70	+0.5
2,247,316	+		Sama_1844	0.70	+0.6
2,247,316	+		Sama_1844	0.70	+1.2
2,247,317	-		Sama_1844	0.70	+0.2
2,247,317	-		Sama_1844	0.70	-0.5
2,247,352	-		Sama_1844	0.72	+0.7
2,247,410	-		Sama_1844	0.74	+0.9
2,247,429	+		Sama_1844	0.74	-0.1
2,247,430	-		Sama_1844	0.75	+0.3
2,247,430	-		Sama_1844	0.75	-0.6
2,247,441	-		Sama_1844	0.75	-0.3
2,247,474	+		Sama_1844	0.76	+0.2
2,247,475	-		Sama_1844	0.76	+3.3
2,247,475	-		Sama_1844	0.76	+0.8
2,247,475	-		Sama_1844	0.76	-0.0
2,247,485	+		Sama_1844	0.76	+2.5
2,247,548	+		Sama_1844	0.79	+1.5
2,247,548	+		Sama_1844	0.79	+1.5
2,247,551	+		Sama_1844	0.79	+0.3
2,247,601	+		Sama_1844	0.81	+0.4
2,247,602	-		Sama_1844	0.81	+0.7
2,247,602	-		Sama_1844	0.81	+2.4
2,247,676	+		Sama_1844	0.83	+0.2
2,247,726	-		Sama_1844	0.85	+0.9
2,247,726	-		Sama_1844	0.85	-2.1
2,247,735	+		Sama_1844	0.85	+0.2
2,247,736	-		Sama_1844	0.85	+1.7
2,247,736	-		Sama_1844	0.85	+1.1
2,247,736	-		Sama_1844	0.85	+1.7
2,247,736	-		Sama_1844	0.85	+0.5
2,247,738	+		Sama_1844	0.86	+1.5
2,247,738	+		Sama_1844	0.86	-1.9
2,247,739	-		Sama_1844	0.86	+1.9
2,247,776	+		Sama_1844	0.87	+1.4
2,247,777	-		Sama_1844	0.87	+1.4
2,247,794	+		Sama_1844	0.88	+1.1
2,247,794	+		Sama_1844	0.88	+1.0
2,247,794	+		Sama_1844	0.88	-0.4
2,247,795	-		Sama_1844	0.88	+0.7
2,247,795	-		Sama_1844	0.88	+2.0
2,247,803	-		Sama_1844	0.88	+0.7
2,247,808	+		Sama_1844	0.88	+1.0
2,247,808	+		Sama_1844	0.88	+1.5
2,247,808	+		Sama_1844	0.88	+1.1
2,247,809	-		Sama_1844	0.88	+1.3
2,247,809	-		Sama_1844	0.88	+1.6
2,247,809	-		Sama_1844	0.88	-0.5
2,247,809	-		Sama_1844	0.88	+2.0
2,247,809	-		Sama_1844	0.88	+1.2
2,247,945	+				+2.5
2,247,946	-				+1.7
2,247,946	-				-0.0
2,247,997	-				+0.1
2,248,039	+				+0.8
2,248,040	-				+0.1
2,248,040	-				+1.2
2,248,134	-				+0.9
2,248,134	-				+1.8
2,248,188	-				-0.2
2,248,195	+				+0.5
2,248,195	+				+0.7
2,248,195	+				-2.1
2,248,195	+				-0.1
2,248,196	-				-0.6
2,248,196	-				+0.4
2,248,196	-				+0.6
2,248,196	-				+1.2
2,248,196	-				-1.7
2,248,196	-				-0.9
2,248,198	+				+0.9
2,248,198	+				+1.1
2,248,198	+				-1.4
2,248,262	+				+1.5
2,248,262	+				-0.8
2,248,263	-				-0.9
2,248,270	+				+1.5
2,248,270	+				-0.1
2,248,270	+				+0.7
2,248,271	-				-1.3
2,248,282	+				+1.0
2,248,282	+				+0.7
2,248,343	-				-2.1
2,248,374	+		Sama_1845	0.11	-2.9
2,248,475	+		Sama_1845	0.25	-2.6
2,248,573	+		Sama_1845	0.38	-3.2
2,248,573	+		Sama_1845	0.38	-0.3
2,248,573	+		Sama_1845	0.38	-1.9
2,248,573	+		Sama_1845	0.38	-1.9
2,248,573	+		Sama_1845	0.38	-1.9
2,248,573	+		Sama_1845	0.38	-0.3
2,248,573	+		Sama_1845	0.38	-0.7
2,248,573	+		Sama_1845	0.38	-0.9
2,248,574	-		Sama_1845	0.39	-4.0
2,248,574	-		Sama_1845	0.39	-1.3
2,248,574	-		Sama_1845	0.39	+1.3
2,248,607	+		Sama_1845	0.43	-2.1
2,248,608	-		Sama_1845	0.43	-1.9
2,248,745	+		Sama_1845	0.62	-1.9
2,248,745	+		Sama_1845	0.62	+0.7
2,248,745	+		Sama_1845	0.62	-2.3
2,248,745	+		Sama_1845	0.62	-1.4
2,248,746	-		Sama_1845	0.62	-1.0
2,248,746	-		Sama_1845	0.62	-0.3
2,248,746	-		Sama_1845	0.62	-0.3
2,248,746	-		Sama_1845	0.62	-1.3
2,248,862	+		Sama_1845	0.78	-0.9
2,248,863	-		Sama_1845	0.78	+1.3
2,248,864	+		Sama_1845	0.78	+0.0
2,248,864	+		Sama_1845	0.78	-1.6
2,248,864	+		Sama_1845	0.78	-1.6
2,248,865	-		Sama_1845	0.78	-2.6
2,248,865	-		Sama_1845	0.78	+0.2
2,248,865	-		Sama_1845	0.78	-0.3
2,248,908	+		Sama_1845	0.84	-2.3
2,248,908	+		Sama_1845	0.84	-2.8
2,248,909	-		Sama_1845	0.84	-1.3
2,248,993	+				-0.9
2,249,005	+				-0.0
2,249,005	+				-1.3
2,249,005	+				-2.9
2,249,005	+				-3.3
2,249,005	+				-0.9
2,249,005	+				-2.3
2,249,005	+				-1.6
2,249,005	+				-1.9
2,249,005	+				+0.1
2,249,006	-				-0.5
2,249,006	-				-3.8
2,249,006	-				-0.9
2,249,006	-				-0.9
2,249,006	-				-3.0
2,249,006	-				-0.6
2,249,006	-				-0.6
2,249,014	+				-1.6
2,249,121	+		Sama_1846	0.10	-3.0
2,249,121	+		Sama_1846	0.10	-0.7
2,249,121	+		Sama_1846	0.10	-0.5
2,249,121	+		Sama_1846	0.10	-1.9
2,249,122	-		Sama_1846	0.10	-2.1
2,249,122	-		Sama_1846	0.10	-1.7
2,249,306	+		Sama_1846	0.29	-1.5
2,249,306	+		Sama_1846	0.29	-1.6
2,249,306	+		Sama_1846	0.29	-2.3
2,249,306	+		Sama_1846	0.29	-0.3
2,249,306	+		Sama_1846	0.29	-2.1
2,249,306	+		Sama_1846	0.29	-0.6
2,249,306	+		Sama_1846	0.29	-1.3
2,249,307	-		Sama_1846	0.29	-1.4
2,249,307	-		Sama_1846	0.29	-3.0
2,249,307	-		Sama_1846	0.29	-1.6
2,249,319	+		Sama_1846	0.30	-1.3
2,249,319	+		Sama_1846	0.30	-2.9
2,249,372	+		Sama_1846	0.35	-2.6
2,249,372	+		Sama_1846	0.35	+0.1
2,249,372	+		Sama_1846	0.35	-1.1
2,249,373	-		Sama_1846	0.36	-1.1
2,249,422	+		Sama_1846	0.40	-2.9
2,249,511	+		Sama_1846	0.49	-1.3
2,249,522	+		Sama_1846	0.51	-1.4
2,249,522	+		Sama_1846	0.51	-3.1
2,249,522	+		Sama_1846	0.51	-0.9
2,249,522	+		Sama_1846	0.51	-1.3
2,249,522	+		Sama_1846	0.51	-2.1
2,249,522	+		Sama_1846	0.51	-0.7
2,249,522	+		Sama_1846	0.51	-2.7
2,249,522	+		Sama_1846	0.51	-0.7
2,249,523	-		Sama_1846	0.51	+1.1
2,249,546	+		Sama_1846	0.53	-2.3
2,249,547	-		Sama_1846	0.53	-1.3
2,249,561	+		Sama_1846	0.54	-1.3
2,249,561	+		Sama_1846	0.54	-1.6
2,249,604	+		Sama_1846	0.59	-1.1
2,249,604	+		Sama_1846	0.59	-2.3
2,249,617	+		Sama_1846	0.60	-1.5
2,249,648	+		Sama_1846	0.63	-0.9
2,249,649	-		Sama_1846	0.63	-0.3
2,249,705	+		Sama_1846	0.69	-0.9
2,249,705	+		Sama_1846	0.69	-0.9
2,249,705	+		Sama_1846	0.69	-0.9
2,249,715	+		Sama_1846	0.70	-0.1
2,249,716	-		Sama_1846	0.70	-0.9
2,249,742	+		Sama_1846	0.73	-0.9
2,249,742	+		Sama_1846	0.73	-1.4
2,249,746	+		Sama_1846	0.73	+1.0
2,249,746	+		Sama_1846	0.73	-1.6
2,249,760	+		Sama_1846	0.75	-1.0
2,249,760	+		Sama_1846	0.75	-0.3
2,249,760	+		Sama_1846	0.75	-2.4
2,249,793	+		Sama_1846	0.78	-0.7
2,249,794	-		Sama_1846	0.78	+1.3
2,249,934	+				-1.5
2,249,981	+				+0.6