Strain Fitness in Shewanella amazonensis SB2B around Sama_1844

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,245,221	-				+0.7
2,245,221	-				-0.6
2,245,270	-				-1.3
2,245,364	+				+2.7
2,245,364	+				+1.1
2,245,365	-				+1.0
2,245,365	-				-1.6
2,245,387	+				-1.6
2,245,387	+				+0.3
2,245,388	-				+1.3
2,245,420	-				+0.1
2,245,420	-				+0.5
2,245,460	+				-0.6
2,245,565	+				+2.1
2,245,566	-				-0.0
2,245,653	-		Sama_1844	0.11	+1.5
2,245,704	-		Sama_1844	0.13	+1.6
2,245,796	+		Sama_1844	0.16	+1.3
2,245,796	+		Sama_1844	0.16	+1.4
2,245,796	+		Sama_1844	0.16	+1.7
2,245,797	-		Sama_1844	0.16	+0.7
2,245,797	-		Sama_1844	0.16	+1.3
2,245,797	+		Sama_1844	0.16	+0.9
2,245,797	-		Sama_1844	0.16	-1.3
2,245,884	-		Sama_1844	0.19	+1.0
2,245,904	+		Sama_1844	0.20	+1.8
2,245,942	-		Sama_1844	0.21	+1.3
2,245,958	+		Sama_1844	0.22	+1.7
2,245,958	+		Sama_1844	0.22	+0.4
2,245,958	+		Sama_1844	0.22	+1.8
2,245,958	+		Sama_1844	0.22	+1.9
2,245,958	+		Sama_1844	0.22	+1.2
2,245,958	+		Sama_1844	0.22	+0.7
2,245,959	-		Sama_1844	0.22	+1.7
2,245,959	-		Sama_1844	0.22	+1.7
2,245,959	-		Sama_1844	0.22	+1.6
2,245,960	+		Sama_1844	0.22	-0.5
2,245,960	+		Sama_1844	0.22	+0.7
2,245,960	+		Sama_1844	0.22	+2.4
2,245,961	-		Sama_1844	0.22	+1.9
2,245,995	-		Sama_1844	0.23	+0.4
2,245,995	-		Sama_1844	0.23	+1.7
2,246,014	+		Sama_1844	0.24	-0.5
2,246,015	-		Sama_1844	0.24	+2.3
2,246,015	-		Sama_1844	0.24	+3.2
2,246,064	-		Sama_1844	0.26	+1.4
2,246,101	-		Sama_1844	0.27	+2.6
2,246,155	+		Sama_1844	0.29	+1.3
2,246,188	-		Sama_1844	0.30	+1.7
2,246,188	-		Sama_1844	0.30	+0.3
2,246,263	-		Sama_1844	0.33	+2.3
2,246,263	-		Sama_1844	0.33	-0.1
2,246,282	-		Sama_1844	0.34	+0.7
2,246,311	+		Sama_1844	0.35	-2.6
2,246,312	-		Sama_1844	0.35	+1.8
2,246,319	+		Sama_1844	0.35	+0.7
2,246,320	-		Sama_1844	0.35	+1.2
2,246,320	-		Sama_1844	0.35	+0.7
2,246,320	-		Sama_1844	0.35	+0.6
2,246,361	+		Sama_1844	0.36	-0.0
2,246,384	+		Sama_1844	0.37	-0.1
2,246,475	+		Sama_1844	0.40	-0.7
2,246,475	+		Sama_1844	0.40	-0.5
2,246,475	+		Sama_1844	0.40	+1.6
2,246,475	+		Sama_1844	0.40	+2.0
2,246,476	-		Sama_1844	0.40	+1.9
2,246,476	-		Sama_1844	0.40	+1.4
2,246,476	-		Sama_1844	0.40	+1.1
2,246,598	-		Sama_1844	0.45	+1.4
2,246,675	-		Sama_1844	0.48	+0.9
2,246,700	+		Sama_1844	0.48	+1.9
2,246,701	-		Sama_1844	0.48	+0.7
2,246,808	-		Sama_1844	0.52	+0.9
2,246,917	+		Sama_1844	0.56	+0.3
2,246,917	+		Sama_1844	0.56	+3.6
2,246,917	+		Sama_1844	0.56	-1.9
2,246,917	+		Sama_1844	0.56	+1.3
2,246,917	+		Sama_1844	0.56	+1.0
2,246,917	+		Sama_1844	0.56	+0.6
2,246,917	+		Sama_1844	0.56	+1.0
2,246,917	+		Sama_1844	0.56	+1.4
2,246,918	-		Sama_1844	0.56	+0.1
2,246,918	-		Sama_1844	0.56	+1.2
2,246,918	-		Sama_1844	0.56	+1.1
2,246,918	-		Sama_1844	0.56	+1.5
2,246,918	-		Sama_1844	0.56	+0.7
2,246,918	-		Sama_1844	0.56	-0.1
2,246,918	-		Sama_1844	0.56	+0.1
2,247,001	+		Sama_1844	0.59	+0.8
2,247,001	+		Sama_1844	0.59	+0.1
2,247,002	-		Sama_1844	0.59	-0.3
2,247,049	+		Sama_1844	0.61	+2.8
2,247,049	+		Sama_1844	0.61	+0.9
2,247,050	-		Sama_1844	0.61	+0.9
2,247,050	-		Sama_1844	0.61	-0.2
2,247,067	-		Sama_1844	0.62	+1.0
2,247,067	-		Sama_1844	0.62	+2.4
2,247,087	+		Sama_1844	0.62	+2.1
2,247,088	-		Sama_1844	0.62	+2.4
2,247,127	-		Sama_1844	0.64	+0.7
2,247,145	+		Sama_1844	0.64	+0.2
2,247,145	+		Sama_1844	0.64	+2.5
2,247,145	+		Sama_1844	0.64	+0.4
2,247,145	+		Sama_1844	0.64	+0.7
2,247,146	-		Sama_1844	0.64	+4.0
2,247,146	-		Sama_1844	0.64	+1.3
2,247,146	-		Sama_1844	0.64	+1.4
2,247,146	-		Sama_1844	0.64	+0.1
2,247,146	-		Sama_1844	0.64	+0.9
2,247,146	-		Sama_1844	0.64	+1.2
2,247,146	-		Sama_1844	0.64	-1.6
2,247,146	-		Sama_1844	0.64	+1.7
2,247,146	-		Sama_1844	0.64	+0.6
2,247,146	-		Sama_1844	0.64	-0.1
2,247,146	-		Sama_1844	0.64	+0.2
2,247,146	-		Sama_1844	0.64	+1.6
2,247,146	-		Sama_1844	0.64	+1.3
2,247,149	+		Sama_1844	0.64	+0.4
2,247,149	+		Sama_1844	0.64	+2.4
2,247,149	+		Sama_1844	0.64	+0.9
2,247,149	+		Sama_1844	0.64	+1.9
2,247,149	+		Sama_1844	0.64	+1.6
2,247,149	+		Sama_1844	0.64	-0.3
2,247,150	-		Sama_1844	0.65	-0.3
2,247,150	-		Sama_1844	0.65	+0.5
2,247,150	-		Sama_1844	0.65	+2.3
2,247,150	-		Sama_1844	0.65	+0.6
2,247,150	-		Sama_1844	0.65	+2.2
2,247,150	-		Sama_1844	0.65	+1.7
2,247,150	-		Sama_1844	0.65	+0.7
2,247,150	-		Sama_1844	0.65	-0.3
2,247,150	-		Sama_1844	0.65	+0.7
2,247,150	-		Sama_1844	0.65	-0.3
2,247,150	-		Sama_1844	0.65	+1.4
2,247,309	-		Sama_1844	0.70	+0.5
2,247,316	+		Sama_1844	0.70	+0.6
2,247,316	+		Sama_1844	0.70	+1.2
2,247,317	-		Sama_1844	0.70	+0.2
2,247,317	-		Sama_1844	0.70	-0.5
2,247,352	-		Sama_1844	0.72	+0.7
2,247,410	-		Sama_1844	0.74	+0.9
2,247,429	+		Sama_1844	0.74	-0.1
2,247,430	-		Sama_1844	0.75	+0.3
2,247,430	-		Sama_1844	0.75	-0.6
2,247,441	-		Sama_1844	0.75	-0.3
2,247,474	+		Sama_1844	0.76	+0.2
2,247,475	-		Sama_1844	0.76	+3.3
2,247,475	-		Sama_1844	0.76	+0.8
2,247,475	-		Sama_1844	0.76	-0.0
2,247,485	+		Sama_1844	0.76	+2.5
2,247,548	+		Sama_1844	0.79	+1.5
2,247,548	+		Sama_1844	0.79	+1.5
2,247,551	+		Sama_1844	0.79	+0.3
2,247,601	+		Sama_1844	0.81	+0.4
2,247,602	-		Sama_1844	0.81	+0.7
2,247,602	-		Sama_1844	0.81	+2.4
2,247,676	+		Sama_1844	0.83	+0.2
2,247,726	-		Sama_1844	0.85	+0.9
2,247,726	-		Sama_1844	0.85	-2.1
2,247,735	+		Sama_1844	0.85	+0.2
2,247,736	-		Sama_1844	0.85	+1.7
2,247,736	-		Sama_1844	0.85	+1.1
2,247,736	-		Sama_1844	0.85	+1.7
2,247,736	-		Sama_1844	0.85	+0.5
2,247,738	+		Sama_1844	0.86	+1.5
2,247,738	+		Sama_1844	0.86	-1.9
2,247,739	-		Sama_1844	0.86	+1.9
2,247,776	+		Sama_1844	0.87	+1.4
2,247,777	-		Sama_1844	0.87	+1.4
2,247,794	+		Sama_1844	0.88	+1.1
2,247,794	+		Sama_1844	0.88	+1.0
2,247,794	+		Sama_1844	0.88	-0.4
2,247,795	-		Sama_1844	0.88	+0.7
2,247,795	-		Sama_1844	0.88	+2.0
2,247,803	-		Sama_1844	0.88	+0.7
2,247,808	+		Sama_1844	0.88	+1.0
2,247,808	+		Sama_1844	0.88	+1.5
2,247,808	+		Sama_1844	0.88	+1.1
2,247,809	-		Sama_1844	0.88	+1.3
2,247,809	-		Sama_1844	0.88	+1.6
2,247,809	-		Sama_1844	0.88	-0.5
2,247,809	-		Sama_1844	0.88	+2.0
2,247,809	-		Sama_1844	0.88	+1.2
2,247,945	+				+2.5
2,247,946	-				+1.7
2,247,946	-				-0.0
2,247,997	-				+0.1
2,248,039	+				+0.8
2,248,040	-				+0.1
2,248,040	-				+1.2
2,248,134	-				+0.9
2,248,134	-				+1.8
2,248,188	-				-0.2
2,248,195	+				+0.5
2,248,195	+				+0.7
2,248,195	+				-2.1
2,248,195	+				-0.1
2,248,196	-				-0.6
2,248,196	-				+0.4
2,248,196	-				+0.6
2,248,196	-				+1.2
2,248,196	-				-1.7
2,248,196	-				-0.9
2,248,198	+				+0.9
2,248,198	+				+1.1
2,248,198	+				-1.4
2,248,262	+				+1.5
2,248,262	+				-0.8
2,248,263	-				-0.9
2,248,270	+				+1.5
2,248,270	+				-0.1
2,248,270	+				+0.7
2,248,271	-				-1.3
2,248,282	+				+1.0
2,248,282	+				+0.7
2,248,343	-				-2.1
2,248,374	+		Sama_1845	0.11	-2.9
2,248,475	+		Sama_1845	0.25	-2.6
2,248,573	+		Sama_1845	0.38	-3.2
2,248,573	+		Sama_1845	0.38	-0.3
2,248,573	+		Sama_1845	0.38	-1.9
2,248,573	+		Sama_1845	0.38	-1.9
2,248,573	+		Sama_1845	0.38	-1.9
2,248,573	+		Sama_1845	0.38	-0.3
2,248,573	+		Sama_1845	0.38	-0.7
2,248,573	+		Sama_1845	0.38	-0.9
2,248,574	-		Sama_1845	0.39	-4.0
2,248,574	-		Sama_1845	0.39	-1.3
2,248,574	-		Sama_1845	0.39	+1.3
2,248,607	+		Sama_1845	0.43	-2.1
2,248,608	-		Sama_1845	0.43	-1.9
2,248,745	+		Sama_1845	0.62	-1.9
2,248,745	+		Sama_1845	0.62	+0.7
2,248,745	+		Sama_1845	0.62	-2.3
2,248,745	+		Sama_1845	0.62	-1.4
2,248,746	-		Sama_1845	0.62	-1.0
2,248,746	-		Sama_1845	0.62	-0.3
2,248,746	-		Sama_1845	0.62	-0.3
2,248,746	-		Sama_1845	0.62	-1.3
2,248,862	+		Sama_1845	0.78	-0.9
2,248,863	-		Sama_1845	0.78	+1.3
2,248,864	+		Sama_1845	0.78	+0.0
2,248,864	+		Sama_1845	0.78	-1.6
2,248,864	+		Sama_1845	0.78	-1.6
2,248,865	-		Sama_1845	0.78	-2.6
2,248,865	-		Sama_1845	0.78	+0.2
2,248,865	-		Sama_1845	0.78	-0.3
2,248,908	+		Sama_1845	0.84	-2.3
2,248,908	+		Sama_1845	0.84	-2.8
2,248,909	-		Sama_1845	0.84	-1.3
2,248,993	+				-0.9
2,249,005	+				-0.0
2,249,005	+				-1.3
2,249,005	+				-2.9
2,249,005	+				-3.3
2,249,005	+				-0.9
2,249,005	+				-2.3
2,249,005	+				-1.6
2,249,005	+				-1.9
2,249,005	+				+0.1
2,249,006	-				-0.5
2,249,006	-				-3.8
2,249,006	-				-0.9
2,249,006	-				-0.9
2,249,006	-				-3.0
2,249,006	-				-0.6
2,249,006	-				-0.6
2,249,014	+				-1.6
2,249,121	+		Sama_1846	0.10	-3.0
2,249,121	+		Sama_1846	0.10	-0.7
2,249,121	+		Sama_1846	0.10	-0.5
2,249,121	+		Sama_1846	0.10	-1.9
2,249,122	-		Sama_1846	0.10	-2.1
2,249,122	-		Sama_1846	0.10	-1.7