Experiment: Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0553 and Sama_0554 are separated by 648 nucleotides Sama_0554 and Sama_0555 are separated by 197 nucleotides
Sama_0553: Sama_0553 - no description, at 681,371 to 681,559
_0553
Sama_0554: Sama_0554 - putative transcriptional regulator, CadC (RefSeq), at 682,208 to 684,316
_0554
Sama_0555: Sama_0555 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 684,514 to 688,713
_0555
Position (kb) 682
683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 681.225 kb on + strand at 681.243 kb on + strand at 681.244 kb on - strand at 681.273 kb on + strand at 681.273 kb on + strand at 681.273 kb on + strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.274 kb on - strand at 681.281 kb on + strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.282 kb on - strand at 681.295 kb on + strand at 681.295 kb on + strand at 681.296 kb on - strand at 681.296 kb on - strand at 681.296 kb on - strand at 681.341 kb on - strand at 681.372 kb on + strand at 681.395 kb on - strand, within Sama_0553 at 681.395 kb on - strand, within Sama_0553 at 681.395 kb on - strand, within Sama_0553 at 681.395 kb on - strand, within Sama_0553 at 681.398 kb on + strand, within Sama_0553 at 681.399 kb on - strand, within Sama_0553 at 681.399 kb on - strand, within Sama_0553 at 681.399 kb on - strand, within Sama_0553 at 681.440 kb on + strand, within Sama_0553 at 681.441 kb on - strand, within Sama_0553 at 681.441 kb on - strand, within Sama_0553 at 681.441 kb on - strand, within Sama_0553 at 681.447 kb on + strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.448 kb on - strand, within Sama_0553 at 681.475 kb on - strand, within Sama_0553 at 681.577 kb on + strand at 681.580 kb on + strand at 681.580 kb on + strand at 681.580 kb on + strand at 681.585 kb on + strand at 681.586 kb on - strand at 681.586 kb on - strand at 681.586 kb on - strand at 681.636 kb on - strand at 681.649 kb on + strand at 681.767 kb on - strand at 681.795 kb on - strand at 681.874 kb on - strand at 681.971 kb on + strand at 681.976 kb on - strand at 681.979 kb on - strand at 682.027 kb on + strand at 682.046 kb on + strand at 682.084 kb on + strand at 682.085 kb on - strand at 682.104 kb on + strand at 682.175 kb on + strand at 682.201 kb on + strand at 682.206 kb on - strand at 682.245 kb on + strand at 682.246 kb on - strand at 682.340 kb on - strand at 682.373 kb on + strand at 682.373 kb on + strand at 682.397 kb on - strand at 682.402 kb on - strand at 682.404 kb on + strand at 682.405 kb on - strand at 682.505 kb on - strand, within Sama_0554 at 682.505 kb on - strand, within Sama_0554 at 682.532 kb on + strand, within Sama_0554 at 682.533 kb on - strand, within Sama_0554 at 682.560 kb on + strand, within Sama_0554 at 682.562 kb on + strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.563 kb on - strand, within Sama_0554 at 682.640 kb on - strand, within Sama_0554 at 682.718 kb on - strand, within Sama_0554 at 682.722 kb on - strand, within Sama_0554 at 682.742 kb on - strand, within Sama_0554 at 682.749 kb on + strand, within Sama_0554 at 682.749 kb on + strand, within Sama_0554 at 682.750 kb on - strand, within Sama_0554 at 682.750 kb on - strand, within Sama_0554 at 682.751 kb on + strand, within Sama_0554 at 682.838 kb on + strand, within Sama_0554 at 682.841 kb on - strand, within Sama_0554 at 682.884 kb on - strand, within Sama_0554 at 682.950 kb on + strand, within Sama_0554 at 682.950 kb on + strand, within Sama_0554 at 683.012 kb on + strand, within Sama_0554 at 683.017 kb on + strand, within Sama_0554 at 683.068 kb on + strand, within Sama_0554 at 683.093 kb on + strand, within Sama_0554 at 683.127 kb on - strand, within Sama_0554 at 683.128 kb on + strand, within Sama_0554 at 683.225 kb on - strand, within Sama_0554 at 683.287 kb on - strand, within Sama_0554 at 683.435 kb on + strand, within Sama_0554 at 683.502 kb on + strand, within Sama_0554 at 683.503 kb on - strand, within Sama_0554 at 683.503 kb on - strand, within Sama_0554 at 683.503 kb on - strand, within Sama_0554 at 683.515 kb on + strand, within Sama_0554 at 683.516 kb on - strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.519 kb on + strand, within Sama_0554 at 683.520 kb on - strand, within Sama_0554 at 683.558 kb on + strand, within Sama_0554 at 683.592 kb on + strand, within Sama_0554 at 683.593 kb on - strand, within Sama_0554 at 683.593 kb on - strand, within Sama_0554 at 683.593 kb on - strand, within Sama_0554 at 683.606 kb on - strand, within Sama_0554 at 683.640 kb on + strand, within Sama_0554 at 683.640 kb on + strand, within Sama_0554 at 683.684 kb on + strand, within Sama_0554 at 683.692 kb on + strand, within Sama_0554 at 683.697 kb on + strand, within Sama_0554 at 683.697 kb on + strand, within Sama_0554 at 683.707 kb on + strand, within Sama_0554 at 683.877 kb on + strand, within Sama_0554 at 683.877 kb on + strand, within Sama_0554 at 683.878 kb on - strand, within Sama_0554 at 683.878 kb on - strand, within Sama_0554 at 683.878 kb on - strand, within Sama_0554 at 683.965 kb on + strand, within Sama_0554 at 683.978 kb on + strand, within Sama_0554 at 683.991 kb on + strand, within Sama_0554 at 684.013 kb on + strand, within Sama_0554 at 684.014 kb on - strand, within Sama_0554 at 684.017 kb on + strand, within Sama_0554 at 684.018 kb on - strand, within Sama_0554 at 684.047 kb on - strand, within Sama_0554 at 684.076 kb on + strand, within Sama_0554 at 684.079 kb on + strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.080 kb on - strand, within Sama_0554 at 684.081 kb on + strand, within Sama_0554 at 684.082 kb on - strand, within Sama_0554 at 684.082 kb on - strand, within Sama_0554 at 684.082 kb on - strand, within Sama_0554 at 684.125 kb on + strand at 684.126 kb on - strand at 684.238 kb on + strand at 684.263 kb on + strand at 684.334 kb on + strand at 684.335 kb on - strand at 684.335 kb on - strand at 684.335 kb on - strand at 684.337 kb on + strand at 684.337 kb on + strand at 684.338 kb on - strand at 684.345 kb on + strand at 684.345 kb on + strand at 684.352 kb on + strand at 684.359 kb on + strand at 684.393 kb on - strand at 684.417 kb on + strand at 684.433 kb on - strand at 684.479 kb on - strand at 684.496 kb on - strand at 684.506 kb on + strand at 684.506 kb on + strand at 684.506 kb on + strand at 684.506 kb on + strand at 684.507 kb on - strand at 684.507 kb on - strand at 684.507 kb on - strand at 684.512 kb on - strand at 684.512 kb on - strand at 684.512 kb on - strand at 684.519 kb on + strand at 684.520 kb on - strand at 684.529 kb on + strand at 684.529 kb on + strand at 684.550 kb on + strand at 684.550 kb on + strand at 684.551 kb on - strand at 684.585 kb on + strand at 684.654 kb on + strand at 684.655 kb on - strand at 684.655 kb on - strand at 684.655 kb on - strand at 684.748 kb on + strand at 684.748 kb on + strand at 684.749 kb on - strand at 684.749 kb on - strand at 684.762 kb on + strand at 684.785 kb on + strand at 684.785 kb on + strand at 684.867 kb on + strand at 684.867 kb on + strand at 684.868 kb on - strand at 684.951 kb on + strand, within Sama_0555 at 685.016 kb on - strand, within Sama_0555 at 685.023 kb on + strand, within Sama_0555 at 685.023 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.072 kb on + strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.073 kb on - strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.091 kb on + strand, within Sama_0555 at 685.092 kb on - strand, within Sama_0555 at 685.092 kb on - strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.185 kb on + strand, within Sama_0555 at 685.186 kb on - strand, within Sama_0555
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine remove 681,225 + -0.6 681,243 + +1.5 681,244 - -1.5 681,273 + +0.7 681,273 + -0.3 681,273 + -0.6 681,274 - -1.4 681,274 - +0.3 681,274 - -1.4 681,274 - +0.9 681,274 - -1.5 681,281 + +0.1 681,282 - +1.3 681,282 - -0.0 681,282 - -0.9 681,282 - +0.0 681,282 - +0.9 681,282 - +0.2 681,282 - +0.4 681,295 + -0.8 681,295 + +0.8 681,296 - -1.0 681,296 - -0.3 681,296 - +0.0 681,341 - -0.2 681,372 + -1.6 681,395 - Sama_0553 0.13 -0.0 681,395 - Sama_0553 0.13 +0.7 681,395 - Sama_0553 0.13 -0.1 681,395 - Sama_0553 0.13 -0.1 681,398 + Sama_0553 0.14 -0.2 681,399 - Sama_0553 0.15 -0.0 681,399 - Sama_0553 0.15 -1.0 681,399 - Sama_0553 0.15 -1.1 681,440 + Sama_0553 0.37 -0.4 681,441 - Sama_0553 0.37 -2.5 681,441 - Sama_0553 0.37 +0.5 681,441 - Sama_0553 0.37 -0.7 681,447 + Sama_0553 0.40 -1.1 681,448 - Sama_0553 0.41 +1.0 681,448 - Sama_0553 0.41 -2.0 681,448 - Sama_0553 0.41 -0.1 681,448 - Sama_0553 0.41 +0.2 681,448 - Sama_0553 0.41 +0.4 681,448 - Sama_0553 0.41 +0.4 681,475 - Sama_0553 0.55 -1.1 681,577 + -0.5 681,580 + -0.5 681,580 + +0.2 681,580 + -2.0 681,585 + +1.1 681,586 - +0.5 681,586 - +0.6 681,586 - -0.2 681,636 - +1.5 681,649 + +0.9 681,767 - -0.1 681,795 - +0.2 681,874 - -0.8 681,971 + +0.6 681,976 - -1.5 681,979 - -2.9 682,027 + -1.4 682,046 + -0.7 682,084 + +1.1 682,085 - -0.2 682,104 + +0.2 682,175 + +0.8 682,201 + -0.2 682,206 - +1.7 682,245 + +0.8 682,246 - -0.1 682,340 - +0.4 682,373 + -0.4 682,373 + +1.5 682,397 - -0.7 682,402 - +0.9 682,404 + +1.2 682,405 - -1.4 682,505 - Sama_0554 0.14 +0.5 682,505 - Sama_0554 0.14 +0.1 682,532 + Sama_0554 0.15 -1.8 682,533 - Sama_0554 0.15 -1.4 682,560 + Sama_0554 0.17 +1.2 682,562 + Sama_0554 0.17 -1.1 682,563 - Sama_0554 0.17 +0.2 682,563 - Sama_0554 0.17 -2.8 682,563 - Sama_0554 0.17 +0.9 682,563 - Sama_0554 0.17 +0.4 682,640 - Sama_0554 0.20 +1.0 682,718 - Sama_0554 0.24 +2.2 682,722 - Sama_0554 0.24 +2.0 682,742 - Sama_0554 0.25 +0.6 682,749 + Sama_0554 0.26 +0.7 682,749 + Sama_0554 0.26 -0.6 682,750 - Sama_0554 0.26 +2.4 682,750 - Sama_0554 0.26 +0.4 682,751 + Sama_0554 0.26 +1.3 682,838 + Sama_0554 0.30 -0.6 682,841 - Sama_0554 0.30 -0.0 682,884 - Sama_0554 0.32 -0.4 682,950 + Sama_0554 0.35 -0.8 682,950 + Sama_0554 0.35 +0.2 683,012 + Sama_0554 0.38 -0.3 683,017 + Sama_0554 0.38 +0.2 683,068 + Sama_0554 0.41 +0.5 683,093 + Sama_0554 0.42 +0.2 683,127 - Sama_0554 0.44 +0.8 683,128 + Sama_0554 0.44 -0.1 683,225 - Sama_0554 0.48 +2.8 683,287 - Sama_0554 0.51 +0.4 683,435 + Sama_0554 0.58 -1.1 683,502 + Sama_0554 0.61 +0.6 683,503 - Sama_0554 0.61 -1.5 683,503 - Sama_0554 0.61 +0.4 683,503 - Sama_0554 0.61 +0.3 683,515 + Sama_0554 0.62 +0.3 683,516 - Sama_0554 0.62 -1.8 683,519 + Sama_0554 0.62 -1.3 683,519 + Sama_0554 0.62 -1.4 683,519 + Sama_0554 0.62 -0.5 683,519 + Sama_0554 0.62 -2.0 683,520 - Sama_0554 0.62 -0.6 683,558 + Sama_0554 0.64 -1.2 683,592 + Sama_0554 0.66 +0.9 683,593 - Sama_0554 0.66 +0.9 683,593 - Sama_0554 0.66 +0.5 683,593 - Sama_0554 0.66 +1.4 683,606 - Sama_0554 0.66 +1.0 683,640 + Sama_0554 0.68 -1.6 683,640 + Sama_0554 0.68 +0.4 683,684 + Sama_0554 0.70 -1.6 683,692 + Sama_0554 0.70 +1.1 683,697 + Sama_0554 0.71 -1.8 683,697 + Sama_0554 0.71 -0.4 683,707 + Sama_0554 0.71 +0.2 683,877 + Sama_0554 0.79 -0.3 683,877 + Sama_0554 0.79 -0.3 683,878 - Sama_0554 0.79 +1.3 683,878 - Sama_0554 0.79 +0.4 683,878 - Sama_0554 0.79 +0.5 683,965 + Sama_0554 0.83 -0.1 683,978 + Sama_0554 0.84 +2.4 683,991 + Sama_0554 0.85 +2.4 684,013 + Sama_0554 0.86 -2.6 684,014 - Sama_0554 0.86 +0.1 684,017 + Sama_0554 0.86 +1.2 684,018 - Sama_0554 0.86 +2.0 684,047 - Sama_0554 0.87 +0.2 684,076 + Sama_0554 0.89 +0.8 684,079 + Sama_0554 0.89 -1.6 684,080 - Sama_0554 0.89 +0.3 684,080 - Sama_0554 0.89 +0.2 684,080 - Sama_0554 0.89 +0.2 684,080 - Sama_0554 0.89 -1.0 684,080 - Sama_0554 0.89 -0.8 684,081 + Sama_0554 0.89 +1.8 684,082 - Sama_0554 0.89 -0.5 684,082 - Sama_0554 0.89 +1.4 684,082 - Sama_0554 0.89 +1.0 684,125 + +0.5 684,126 - -0.8 684,238 + -0.1 684,263 + +0.2 684,334 + +0.3 684,335 - +0.9 684,335 - -1.2 684,335 - -1.0 684,337 + +0.2 684,337 + +0.3 684,338 - -0.0 684,345 + -2.0 684,345 + +0.3 684,352 + -1.1 684,359 + -0.6 684,393 - +0.6 684,417 + -0.4 684,433 - -0.2 684,479 - +1.0 684,496 - -1.3 684,506 + -0.0 684,506 + +0.2 684,506 + -0.3 684,506 + -1.8 684,507 - +0.1 684,507 - +1.0 684,507 - -0.5 684,512 - +1.3 684,512 - -3.2 684,512 - -0.5 684,519 + -2.8 684,520 - +0.4 684,529 + -0.0 684,529 + -0.7 684,550 + +1.5 684,550 + -1.6 684,551 - -0.9 684,585 + -2.3 684,654 + -2.1 684,655 - -1.3 684,655 - -1.4 684,655 - +1.2 684,748 + +1.4 684,748 + +1.3 684,749 - +0.5 684,749 - -0.4 684,762 + +0.7 684,785 + -2.2 684,785 + +0.6 684,867 + -2.6 684,867 + -0.4 684,868 - +1.1 684,951 + Sama_0555 0.10 -0.8 685,016 - Sama_0555 0.12 -0.2 685,023 + Sama_0555 0.12 -0.6 685,023 + Sama_0555 0.12 +0.3 685,072 + Sama_0555 0.13 +1.2 685,072 + Sama_0555 0.13 -1.1 685,072 + Sama_0555 0.13 +2.2 685,072 + Sama_0555 0.13 +0.9 685,072 + Sama_0555 0.13 +0.2 685,072 + Sama_0555 0.13 -1.0 685,072 + Sama_0555 0.13 +0.7 685,073 - Sama_0555 0.13 +1.5 685,073 - Sama_0555 0.13 -1.8 685,073 - Sama_0555 0.13 -0.4 685,073 - Sama_0555 0.13 +0.1 685,073 - Sama_0555 0.13 -0.0 685,073 - Sama_0555 0.13 -0.7 685,091 + Sama_0555 0.14 +0.2 685,091 + Sama_0555 0.14 +0.2 685,091 + Sama_0555 0.14 +0.9 685,091 + Sama_0555 0.14 -0.7 685,091 + Sama_0555 0.14 -0.5 685,091 + Sama_0555 0.14 -0.9 685,091 + Sama_0555 0.14 +0.1 685,092 - Sama_0555 0.14 +0.6 685,092 - Sama_0555 0.14 +0.3 685,185 + Sama_0555 0.16 -0.2 685,185 + Sama_0555 0.16 -0.2 685,185 + Sama_0555 0.16 +1.6 685,185 + Sama_0555 0.16 +0.8 685,185 + Sama_0555 0.16 -0.2 685,186 - Sama_0555 0.16 -1.4
Or see this region's nucleotide sequence