Experiment: Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0386 and hemE are separated by 456 nucleotides hemE and Sama_0388 are separated by 503 nucleotides
Sama_0386: Sama_0386 - anti-RNA polymerase sigma 70 factor (RefSeq), at 478,075 to 478,539
_0386
Sama_0387: hemE - uroporphyrinogen decarboxylase (RefSeq), at 478,996 to 480,060
hemE
Sama_0388: Sama_0388 - putative diguanylate phosphodiesterase (RefSeq), at 480,564 to 483,077
_0388
Position (kb) 478
479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 477.999 kb on + strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.000 kb on - strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.001 kb on + strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.002 kb on - strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.072 kb on + strand at 478.073 kb on - strand at 478.073 kb on - strand at 478.203 kb on + strand, within Sama_0386 at 478.204 kb on - strand, within Sama_0386 at 478.204 kb on - strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.205 kb on + strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.206 kb on - strand, within Sama_0386 at 478.230 kb on + strand, within Sama_0386 at 478.230 kb on + strand, within Sama_0386 at 478.230 kb on + strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.231 kb on - strand, within Sama_0386 at 478.320 kb on + strand, within Sama_0386 at 478.320 kb on + strand, within Sama_0386 at 478.320 kb on + strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.321 kb on - strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.322 kb on + strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.323 kb on - strand, within Sama_0386 at 478.349 kb on + strand, within Sama_0386 at 478.349 kb on + strand, within Sama_0386 at 478.350 kb on - strand, within Sama_0386 at 478.350 kb on - strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.415 kb on + strand, within Sama_0386 at 478.416 kb on - strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.423 kb on + strand, within Sama_0386 at 478.424 kb on - strand, within Sama_0386 at 478.424 kb on - strand, within Sama_0386 at 478.442 kb on + strand, within Sama_0386 at 478.491 kb on + strand, within Sama_0386 at 478.491 kb on + strand, within Sama_0386 at 478.491 kb on + strand, within Sama_0386 at 478.492 kb on - strand, within Sama_0386 at 478.492 kb on - strand, within Sama_0386 at 478.557 kb on + strand at 478.557 kb on + strand at 478.557 kb on + strand at 478.557 kb on + strand at 478.557 kb on + strand at 478.558 kb on - strand at 478.558 kb on - strand at 478.558 kb on - strand at 478.558 kb on - strand at 478.572 kb on + strand at 478.577 kb on + strand at 478.577 kb on + strand at 478.578 kb on - strand at 478.578 kb on - strand at 478.578 kb on - strand at 478.658 kb on - strand at 478.718 kb on + strand at 478.718 kb on + strand at 478.718 kb on + strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.719 kb on - strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.720 kb on + strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.721 kb on - strand at 478.775 kb on - strand at 478.775 kb on - strand at 478.825 kb on + strand at 478.825 kb on + strand at 478.825 kb on + strand at 478.825 kb on + strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.826 kb on - strand at 478.868 kb on + strand at 478.869 kb on - strand at 478.869 kb on - strand at 478.869 kb on - strand at 478.869 kb on - strand at 478.877 kb on - strand at 478.934 kb on + strand at 478.935 kb on - strand at 478.947 kb on + strand at 480.049 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.058 kb on + strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.059 kb on - strand at 480.119 kb on + strand at 480.119 kb on + strand at 480.120 kb on - strand at 480.134 kb on + strand at 480.134 kb on + strand at 480.135 kb on - strand at 480.147 kb on + strand at 480.147 kb on + strand at 480.148 kb on - strand at 480.172 kb on + strand at 480.172 kb on + strand at 480.173 kb on - strand at 480.173 kb on - strand at 480.173 kb on - strand at 480.241 kb on + strand at 480.241 kb on + strand at 480.242 kb on - strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.325 kb on + strand at 480.326 kb on - strand at 480.326 kb on - strand at 480.326 kb on - strand at 480.326 kb on - strand at 480.328 kb on - strand at 480.328 kb on - strand at 480.328 kb on - strand at 480.337 kb on + strand at 480.337 kb on + strand at 480.365 kb on + strand at 480.365 kb on + strand at 480.366 kb on - strand at 480.438 kb on - strand at 480.487 kb on + strand at 480.487 kb on + strand at 480.488 kb on - strand at 480.488 kb on - strand at 480.488 kb on - strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.492 kb on + strand at 480.535 kb on - strand at 480.560 kb on + strand at 480.608 kb on + strand at 480.608 kb on + strand at 480.609 kb on - strand at 480.609 kb on - strand at 480.630 kb on + strand at 480.630 kb on + strand at 480.630 kb on + strand at 480.708 kb on - strand at 480.710 kb on + strand at 480.710 kb on + strand at 480.720 kb on + strand at 480.721 kb on - strand at 480.729 kb on - strand at 480.745 kb on + strand at 480.745 kb on + strand at 480.745 kb on + strand at 480.746 kb on - strand at 480.746 kb on - strand at 480.746 kb on - strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.762 kb on + strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.763 kb on - strand at 480.807 kb on - strand at 480.807 kb on - strand at 480.807 kb on - strand at 480.807 kb on - strand at 480.822 kb on + strand, within Sama_0388 at 480.822 kb on + strand, within Sama_0388 at 480.903 kb on + strand, within Sama_0388 at 480.903 kb on + strand, within Sama_0388 at 480.904 kb on - strand, within Sama_0388 at 480.910 kb on + strand, within Sama_0388 at 480.910 kb on + strand, within Sama_0388 at 480.989 kb on - strand, within Sama_0388 at 480.989 kb on - strand, within Sama_0388 at 481.004 kb on + strand, within Sama_0388 at 481.005 kb on - strand, within Sama_0388
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine remove 477,999 + -1.0 477,999 + -1.3 477,999 + -1.5 477,999 + +1.0 477,999 + +0.5 477,999 + -1.0 477,999 + +0.3 477,999 + -1.2 477,999 + +0.9 477,999 + +0.0 477,999 + -2.0 477,999 + -1.8 477,999 + +0.5 477,999 + +0.2 477,999 + +1.9 478,000 - -0.3 478,000 - +0.2 478,000 - +0.9 478,000 - +2.1 478,000 - +0.5 478,000 - -1.2 478,000 - -0.1 478,000 - +0.3 478,000 - -0.2 478,000 - -2.6 478,000 - -0.2 478,001 + -0.9 478,001 + +1.2 478,001 + +1.0 478,001 + -0.7 478,001 + +0.6 478,001 + +0.0 478,001 + -1.7 478,001 + -2.4 478,001 + +0.3 478,001 + +0.5 478,002 - -0.6 478,002 - -0.1 478,002 - -2.4 478,002 - +0.9 478,002 - -1.3 478,002 - +1.6 478,002 - -1.3 478,002 - -0.1 478,002 - -0.8 478,002 - -0.1 478,002 - +1.7 478,002 - +0.1 478,072 + -3.2 478,072 + +1.7 478,072 + +0.3 478,072 + -1.0 478,072 + +0.6 478,072 + -0.6 478,073 - -1.5 478,073 - -0.4 478,203 + Sama_0386 0.28 -1.0 478,204 - Sama_0386 0.28 +0.8 478,204 - Sama_0386 0.28 +0.7 478,205 + Sama_0386 0.28 -0.2 478,205 + Sama_0386 0.28 +1.1 478,205 + Sama_0386 0.28 +1.3 478,205 + Sama_0386 0.28 +0.5 478,205 + Sama_0386 0.28 -1.0 478,205 + Sama_0386 0.28 -0.3 478,205 + Sama_0386 0.28 +1.3 478,205 + Sama_0386 0.28 -0.1 478,205 + Sama_0386 0.28 -1.3 478,205 + Sama_0386 0.28 +0.4 478,206 - Sama_0386 0.28 +0.2 478,206 - Sama_0386 0.28 -0.4 478,206 - Sama_0386 0.28 -1.1 478,206 - Sama_0386 0.28 -1.0 478,206 - Sama_0386 0.28 +1.8 478,206 - Sama_0386 0.28 +0.0 478,206 - Sama_0386 0.28 +1.7 478,206 - Sama_0386 0.28 +0.8 478,206 - Sama_0386 0.28 -0.3 478,206 - Sama_0386 0.28 -1.5 478,206 - Sama_0386 0.28 +2.1 478,206 - Sama_0386 0.28 +0.4 478,230 + Sama_0386 0.33 -0.5 478,230 + Sama_0386 0.33 +0.0 478,230 + Sama_0386 0.33 +0.5 478,231 - Sama_0386 0.34 +0.5 478,231 - Sama_0386 0.34 -0.7 478,231 - Sama_0386 0.34 +0.6 478,231 - Sama_0386 0.34 +0.1 478,231 - Sama_0386 0.34 +0.4 478,231 - Sama_0386 0.34 +0.7 478,231 - Sama_0386 0.34 +0.5 478,231 - Sama_0386 0.34 +1.8 478,320 + Sama_0386 0.53 -0.6 478,320 + Sama_0386 0.53 -0.2 478,320 + Sama_0386 0.53 +1.5 478,321 - Sama_0386 0.53 +2.5 478,321 - Sama_0386 0.53 +0.8 478,321 - Sama_0386 0.53 +1.1 478,321 - Sama_0386 0.53 +0.1 478,322 + Sama_0386 0.53 +0.6 478,322 + Sama_0386 0.53 +2.5 478,322 + Sama_0386 0.53 +0.5 478,322 + Sama_0386 0.53 +3.6 478,323 - Sama_0386 0.53 -2.3 478,323 - Sama_0386 0.53 +0.2 478,323 - Sama_0386 0.53 +0.0 478,323 - Sama_0386 0.53 +0.6 478,323 - Sama_0386 0.53 +0.7 478,323 - Sama_0386 0.53 -0.3 478,323 - Sama_0386 0.53 +1.4 478,323 - Sama_0386 0.53 +0.6 478,323 - Sama_0386 0.53 +0.7 478,349 + Sama_0386 0.59 +0.0 478,349 + Sama_0386 0.59 +0.4 478,350 - Sama_0386 0.59 +0.4 478,350 - Sama_0386 0.59 +2.3 478,415 + Sama_0386 0.73 -0.1 478,415 + Sama_0386 0.73 -0.3 478,415 + Sama_0386 0.73 -0.7 478,415 + Sama_0386 0.73 -0.8 478,415 + Sama_0386 0.73 +0.9 478,416 - Sama_0386 0.73 -1.9 478,423 + Sama_0386 0.75 +0.7 478,423 + Sama_0386 0.75 +0.2 478,423 + Sama_0386 0.75 +0.3 478,423 + Sama_0386 0.75 -0.1 478,424 - Sama_0386 0.75 -0.7 478,424 - Sama_0386 0.75 +0.7 478,442 + Sama_0386 0.79 -0.8 478,491 + Sama_0386 0.89 +2.0 478,491 + Sama_0386 0.89 +2.0 478,491 + Sama_0386 0.89 -1.3 478,492 - Sama_0386 0.90 +0.9 478,492 - Sama_0386 0.90 +0.3 478,557 + -0.2 478,557 + -0.7 478,557 + +1.8 478,557 + -0.3 478,557 + +0.0 478,558 - +0.3 478,558 - -0.4 478,558 - -1.3 478,558 - +0.1 478,572 + +1.3 478,577 + +0.6 478,577 + +0.8 478,578 - +0.6 478,578 - -1.9 478,578 - -1.0 478,658 - +0.6 478,718 + -0.3 478,718 + -2.2 478,718 + +1.3 478,719 - -2.0 478,719 - -1.5 478,719 - -1.0 478,719 - -1.5 478,719 - -1.6 478,719 - -1.7 478,720 + -2.0 478,720 + -1.3 478,720 + -1.0 478,721 - -1.0 478,721 - -1.4 478,721 - +0.3 478,721 - -0.4 478,721 - -1.5 478,775 - -1.4 478,775 - -2.3 478,825 + -1.3 478,825 + -0.4 478,825 + +1.3 478,825 + -1.5 478,826 - -2.4 478,826 - -0.7 478,826 - +1.0 478,826 - -0.6 478,826 - -1.1 478,826 - +0.7 478,868 + +1.0 478,869 - +0.3 478,869 - +0.7 478,869 - -0.1 478,869 - +0.3 478,877 - +0.3 478,934 + +0.3 478,935 - -1.4 478,947 + +1.6 480,049 + -1.6 480,058 + +1.1 480,058 + +1.3 480,058 + -0.7 480,058 + -0.9 480,058 + -0.3 480,058 + +0.7 480,058 + -1.0 480,058 + +1.3 480,059 - -1.5 480,059 - -0.7 480,059 - -1.0 480,059 - +1.1 480,059 - +0.0 480,059 - -0.1 480,119 + +0.9 480,119 + -0.9 480,120 - -0.3 480,134 + +0.0 480,134 + +0.7 480,135 - +1.1 480,147 + +0.6 480,147 + -2.0 480,148 - +0.7 480,172 + +0.3 480,172 + +0.6 480,173 - +0.7 480,173 - -0.1 480,173 - +0.4 480,241 + +0.6 480,241 + -0.8 480,242 - -1.0 480,325 + +1.3 480,325 + +0.4 480,325 + -0.2 480,325 + +1.2 480,325 + +1.5 480,325 + -0.2 480,326 - +0.3 480,326 - -0.0 480,326 - +0.9 480,326 - -1.3 480,328 - -2.9 480,328 - -0.1 480,328 - -1.0 480,337 + +0.7 480,337 + -0.5 480,365 + -1.0 480,365 + -0.3 480,366 - -0.3 480,438 - +0.3 480,487 + -1.3 480,487 + -0.2 480,488 - +0.8 480,488 - -0.4 480,488 - -0.7 480,492 + -0.6 480,492 + -0.3 480,492 + +0.3 480,492 + -0.4 480,492 + -1.9 480,535 - +0.3 480,560 + -0.2 480,608 + -0.3 480,608 + -0.6 480,609 - -0.6 480,609 - +0.9 480,630 + -0.5 480,630 + +1.3 480,630 + +0.1 480,708 - +2.3 480,710 + -0.6 480,710 + +0.0 480,720 + -1.3 480,721 - -1.7 480,729 - +1.3 480,745 + +1.3 480,745 + +0.7 480,745 + +0.6 480,746 - +0.1 480,746 - -1.1 480,746 - +0.8 480,762 + -0.1 480,762 + -2.0 480,762 + -0.1 480,762 + -1.0 480,762 + +0.6 480,762 + +0.5 480,762 + -1.0 480,762 + +1.2 480,762 + +0.1 480,763 - -1.2 480,763 - -1.3 480,763 - -0.3 480,763 - -0.6 480,763 - -1.1 480,763 - -1.3 480,807 - -0.6 480,807 - -2.3 480,807 - -1.2 480,807 - +0.1 480,822 + Sama_0388 0.10 -1.9 480,822 + Sama_0388 0.10 +0.6 480,903 + Sama_0388 0.13 +0.2 480,903 + Sama_0388 0.13 +0.2 480,904 - Sama_0388 0.14 +2.0 480,910 + Sama_0388 0.14 +0.5 480,910 + Sama_0388 0.14 +0.1 480,989 - Sama_0388 0.17 +0.5 480,989 - Sama_0388 0.17 +0.3 481,004 + Sama_0388 0.18 -0.5 481,005 - Sama_0388 0.18 -0.9
Or see this region's nucleotide sequence