Experiment: Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0320 and pyrE are separated by 106 nucleotides pyrE and folE are separated by 101 nucleotides folE and Sama_0323 are separated by 182 nucleotides
Sama_0320: Sama_0320 - tRNA nucleotidyltransferase (RefSeq), at 387,592 to 388,305
_0320
Sama_0321: pyrE - orotate phosphoribosyltransferase (RefSeq), at 388,412 to 389,053
pyrE
Sama_0322: folE - GTP cyclohydrolase I (RefSeq), at 389,155 to 389,805
folE
Sama_0323: Sama_0323 - prolyl oligopeptidase family protein (RefSeq), at 389,988 to 391,937
_0323
Position (kb) 389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 388.281 kb on + strand at 388.348 kb on + strand at 388.368 kb on + strand at 388.369 kb on - strand at 388.399 kb on + strand at 388.400 kb on - strand at 388.400 kb on - strand at 388.421 kb on + strand at 388.435 kb on + strand at 388.456 kb on + strand at 388.457 kb on - strand at 388.457 kb on - strand at 388.462 kb on - strand at 388.480 kb on + strand, within pyrE at 388.509 kb on - strand, within pyrE at 388.509 kb on - strand, within pyrE at 388.509 kb on - strand, within pyrE at 388.531 kb on + strand, within pyrE at 388.531 kb on + strand, within pyrE at 388.532 kb on - strand, within pyrE at 388.532 kb on - strand, within pyrE at 388.535 kb on - strand, within pyrE at 388.569 kb on - strand, within pyrE at 388.569 kb on - strand, within pyrE at 388.625 kb on + strand, within pyrE at 388.625 kb on + strand, within pyrE at 388.626 kb on - strand, within pyrE at 388.626 kb on - strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.628 kb on - strand, within pyrE at 388.628 kb on - strand, within pyrE at 388.628 kb on - strand, within pyrE at 388.695 kb on - strand, within pyrE at 388.702 kb on + strand, within pyrE at 388.708 kb on + strand, within pyrE at 388.708 kb on + strand, within pyrE at 388.709 kb on - strand, within pyrE at 388.709 kb on - strand, within pyrE at 388.738 kb on + strand, within pyrE at 388.738 kb on + strand, within pyrE at 388.765 kb on + strand, within pyrE at 388.765 kb on + strand, within pyrE at 388.766 kb on - strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 389.022 kb on + strand at 389.030 kb on + strand at 389.030 kb on + strand at 389.051 kb on + strand at 389.051 kb on + strand at 389.051 kb on + strand at 389.052 kb on - strand at 389.052 kb on - strand at 389.064 kb on + strand at 389.064 kb on + strand at 389.064 kb on + strand at 389.071 kb on + strand at 389.100 kb on + strand at 389.101 kb on - strand at 389.101 kb on - strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.145 kb on - strand at 389.145 kb on - strand at 389.150 kb on + strand at 389.151 kb on - strand at 389.151 kb on - strand at 389.151 kb on - strand at 389.863 kb on - strand at 389.863 kb on - strand at 389.863 kb on - strand at 389.898 kb on - strand at 389.918 kb on + strand at 389.926 kb on - strand at 389.936 kb on + strand at 390.031 kb on + strand at 390.031 kb on + strand at 390.032 kb on - strand at 390.032 kb on - strand at 390.034 kb on + strand at 390.034 kb on + strand at 390.034 kb on + strand at 390.034 kb on + strand at 390.034 kb on + strand at 390.034 kb on + strand at 390.034 kb on + strand at 390.035 kb on - strand at 390.035 kb on - strand at 390.035 kb on - strand at 390.035 kb on - strand at 390.035 kb on - strand at 390.035 kb on - strand at 390.056 kb on + strand at 390.058 kb on + strand at 390.059 kb on - strand at 390.103 kb on + strand at 390.103 kb on + strand at 390.103 kb on + strand at 390.104 kb on - strand at 390.140 kb on - strand at 390.177 kb on + strand at 390.178 kb on - strand at 390.203 kb on + strand, within Sama_0323 at 390.259 kb on - strand, within Sama_0323 at 390.259 kb on - strand, within Sama_0323 at 390.278 kb on + strand, within Sama_0323 at 390.331 kb on + strand, within Sama_0323 at 390.331 kb on + strand, within Sama_0323 at 390.332 kb on - strand, within Sama_0323 at 390.332 kb on - strand, within Sama_0323 at 390.332 kb on - strand, within Sama_0323 at 390.332 kb on - strand, within Sama_0323 at 390.332 kb on - strand, within Sama_0323 at 390.332 kb on - strand, within Sama_0323 at 390.332 kb on - strand, within Sama_0323 at 390.333 kb on + strand, within Sama_0323 at 390.333 kb on + strand, within Sama_0323 at 390.333 kb on + strand, within Sama_0323 at 390.333 kb on + strand, within Sama_0323 at 390.333 kb on + strand, within Sama_0323 at 390.333 kb on + strand, within Sama_0323 at 390.333 kb on + strand, within Sama_0323 at 390.334 kb on - strand, within Sama_0323 at 390.334 kb on - strand, within Sama_0323 at 390.334 kb on - strand, within Sama_0323 at 390.334 kb on - strand, within Sama_0323 at 390.334 kb on - strand, within Sama_0323 at 390.334 kb on - strand, within Sama_0323 at 390.400 kb on + strand, within Sama_0323 at 390.425 kb on + strand, within Sama_0323 at 390.426 kb on - strand, within Sama_0323 at 390.440 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.480 kb on + strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.481 kb on - strand, within Sama_0323 at 390.491 kb on - strand, within Sama_0323 at 390.518 kb on - strand, within Sama_0323 at 390.544 kb on + strand, within Sama_0323 at 390.567 kb on - strand, within Sama_0323 at 390.582 kb on + strand, within Sama_0323 at 390.582 kb on + strand, within Sama_0323 at 390.759 kb on + strand, within Sama_0323 at 390.759 kb on + strand, within Sama_0323 at 390.760 kb on - strand, within Sama_0323
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine remove 388,281 + -1.5 388,348 + -0.8 388,368 + -0.8 388,369 - +2.3 388,399 + -0.3 388,400 - +2.3 388,400 - -0.6 388,421 + -0.9 388,435 + -0.3 388,456 + -1.0 388,457 - -1.1 388,457 - -2.3 388,462 - -0.7 388,480 + pyrE Sama_0321 0.11 -1.7 388,509 - pyrE Sama_0321 0.15 -1.7 388,509 - pyrE Sama_0321 0.15 -0.3 388,509 - pyrE Sama_0321 0.15 -0.1 388,531 + pyrE Sama_0321 0.19 -1.7 388,531 + pyrE Sama_0321 0.19 -2.4 388,532 - pyrE Sama_0321 0.19 +0.3 388,532 - pyrE Sama_0321 0.19 -1.3 388,535 - pyrE Sama_0321 0.19 -1.7 388,569 - pyrE Sama_0321 0.24 -1.3 388,569 - pyrE Sama_0321 0.24 -1.8 388,625 + pyrE Sama_0321 0.33 -2.0 388,625 + pyrE Sama_0321 0.33 -2.1 388,626 - pyrE Sama_0321 0.33 -1.3 388,626 - pyrE Sama_0321 0.33 -2.3 388,627 + pyrE Sama_0321 0.33 -0.8 388,627 + pyrE Sama_0321 0.33 -0.3 388,627 + pyrE Sama_0321 0.33 +1.3 388,627 + pyrE Sama_0321 0.33 -0.3 388,628 - pyrE Sama_0321 0.34 -0.3 388,628 - pyrE Sama_0321 0.34 -1.0 388,628 - pyrE Sama_0321 0.34 -1.7 388,695 - pyrE Sama_0321 0.44 -3.1 388,702 + pyrE Sama_0321 0.45 -1.5 388,708 + pyrE Sama_0321 0.46 -2.3 388,708 + pyrE Sama_0321 0.46 -1.5 388,709 - pyrE Sama_0321 0.46 +0.3 388,709 - pyrE Sama_0321 0.46 -2.4 388,738 + pyrE Sama_0321 0.51 +1.3 388,738 + pyrE Sama_0321 0.51 -1.0 388,765 + pyrE Sama_0321 0.55 -0.3 388,765 + pyrE Sama_0321 0.55 -2.1 388,766 - pyrE Sama_0321 0.55 -1.7 388,771 + pyrE Sama_0321 0.56 -1.5 388,771 + pyrE Sama_0321 0.56 -0.7 388,771 + pyrE Sama_0321 0.56 -1.0 388,771 + pyrE Sama_0321 0.56 -1.3 388,772 - pyrE Sama_0321 0.56 -0.7 388,772 - pyrE Sama_0321 0.56 +1.3 388,772 - pyrE Sama_0321 0.56 -2.5 388,772 - pyrE Sama_0321 0.56 -2.3 388,772 - pyrE Sama_0321 0.56 +0.6 388,772 - pyrE Sama_0321 0.56 -1.8 389,022 + -0.2 389,030 + -0.7 389,030 + +2.1 389,051 + -0.6 389,051 + -0.2 389,051 + -0.8 389,052 - -1.1 389,052 - +0.3 389,064 + -1.4 389,064 + -0.2 389,064 + -1.1 389,071 + -0.3 389,100 + -2.0 389,101 - -1.3 389,101 - -0.1 389,144 + +1.6 389,144 + +1.3 389,144 + -0.3 389,144 + +1.1 389,144 + +0.3 389,144 + -0.6 389,145 - -1.4 389,145 - +0.4 389,150 + -0.5 389,151 - +0.5 389,151 - +0.0 389,151 - +0.4 389,863 - +0.9 389,863 - +0.0 389,863 - -0.0 389,898 - +0.2 389,918 + -1.5 389,926 - +1.9 389,936 + +1.0 390,031 + +0.3 390,031 + +0.5 390,032 - -1.5 390,032 - +0.3 390,034 + -0.9 390,034 + +0.1 390,034 + +0.7 390,034 + -2.0 390,034 + +0.5 390,034 + +1.9 390,034 + +2.0 390,035 - +0.8 390,035 - +1.7 390,035 - -1.3 390,035 - -0.3 390,035 - +0.6 390,035 - -0.0 390,056 + -2.1 390,058 + +0.9 390,059 - -0.8 390,103 + +0.8 390,103 + -0.8 390,103 + +0.3 390,104 - -0.7 390,140 - +0.4 390,177 + +0.4 390,178 - +1.2 390,203 + Sama_0323 0.11 -0.4 390,259 - Sama_0323 0.14 -0.4 390,259 - Sama_0323 0.14 +0.7 390,278 + Sama_0323 0.15 +1.2 390,331 + Sama_0323 0.18 -0.4 390,331 + Sama_0323 0.18 -0.1 390,332 - Sama_0323 0.18 -1.2 390,332 - Sama_0323 0.18 -1.7 390,332 - Sama_0323 0.18 +0.7 390,332 - Sama_0323 0.18 +1.7 390,332 - Sama_0323 0.18 +1.3 390,332 - Sama_0323 0.18 -1.0 390,332 - Sama_0323 0.18 +0.7 390,333 + Sama_0323 0.18 -0.9 390,333 + Sama_0323 0.18 -0.6 390,333 + Sama_0323 0.18 -1.7 390,333 + Sama_0323 0.18 +0.8 390,333 + Sama_0323 0.18 -2.1 390,333 + Sama_0323 0.18 -0.3 390,333 + Sama_0323 0.18 -1.3 390,334 - Sama_0323 0.18 -0.4 390,334 - Sama_0323 0.18 +0.3 390,334 - Sama_0323 0.18 -1.0 390,334 - Sama_0323 0.18 +0.5 390,334 - Sama_0323 0.18 +0.1 390,334 - Sama_0323 0.18 -1.3 390,400 + Sama_0323 0.21 -1.3 390,425 + Sama_0323 0.22 -0.5 390,426 - Sama_0323 0.22 -0.3 390,440 + Sama_0323 0.23 +0.6 390,480 + Sama_0323 0.25 +1.1 390,480 + Sama_0323 0.25 +0.9 390,480 + Sama_0323 0.25 -1.8 390,480 + Sama_0323 0.25 -1.3 390,480 + Sama_0323 0.25 +2.6 390,480 + Sama_0323 0.25 -0.1 390,480 + Sama_0323 0.25 +2.3 390,480 + Sama_0323 0.25 -1.1 390,480 + Sama_0323 0.25 -1.8 390,480 + Sama_0323 0.25 +0.3 390,480 + Sama_0323 0.25 -0.8 390,480 + Sama_0323 0.25 -0.3 390,480 + Sama_0323 0.25 +0.2 390,481 - Sama_0323 0.25 +0.3 390,481 - Sama_0323 0.25 -0.3 390,481 - Sama_0323 0.25 +0.9 390,481 - Sama_0323 0.25 -0.5 390,481 - Sama_0323 0.25 +0.0 390,481 - Sama_0323 0.25 -0.1 390,481 - Sama_0323 0.25 -0.6 390,481 - Sama_0323 0.25 -0.5 390,481 - Sama_0323 0.25 -0.7 390,481 - Sama_0323 0.25 +0.5 390,481 - Sama_0323 0.25 -2.0 390,481 - Sama_0323 0.25 +0.6 390,481 - Sama_0323 0.25 +0.5 390,481 - Sama_0323 0.25 -0.5 390,491 - Sama_0323 0.26 +0.6 390,518 - Sama_0323 0.27 +1.5 390,544 + Sama_0323 0.29 -0.9 390,567 - Sama_0323 0.30 -0.7 390,582 + Sama_0323 0.30 +0.6 390,582 + Sama_0323 0.30 +0.1 390,759 + Sama_0323 0.40 -1.4 390,759 + Sama_0323 0.40 +0.4 390,760 - Sama_0323 0.40 -0.3
Or see this region's nucleotide sequence