Experiment: Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpoZ and gmk are separated by 77 nucleotides gmk and Sama_0267 are separated by 187 nucleotides Sama_0267 and Sama_0268 are separated by 85 nucleotides Sama_0268 and Sama_0269 overlap by 8 nucleotides
Sama_0265: rpoZ - DNA-directed RNA polymerase subunit omega (RefSeq), at 304,957 to 305,235
rpoZ
Sama_0266: gmk - guanylate kinase (RefSeq), at 305,313 to 305,936
gmk
Sama_0267: Sama_0267 - hypothetical protein (RefSeq), at 306,124 to 307,608
_0267
Sama_0268: Sama_0268 - hypothetical protein (RefSeq), at 307,694 to 308,560
_0268
Sama_0269: Sama_0269 - hypothetical protein (RefSeq), at 308,553 to 309,617
_0269
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 305.218 kb on + strand at 305.219 kb on - strand at 305.219 kb on - strand at 305.219 kb on - strand at 305.225 kb on - strand at 305.238 kb on - strand at 305.238 kb on - strand at 305.263 kb on - strand at 305.263 kb on - strand at 305.301 kb on - strand at 305.301 kb on - strand at 305.305 kb on + strand at 305.305 kb on + strand at 305.306 kb on - strand at 305.306 kb on - strand at 305.306 kb on - strand at 305.333 kb on + strand at 305.334 kb on - strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.339 kb on + strand at 305.340 kb on - strand at 305.340 kb on - strand at 305.373 kb on + strand at 306.001 kb on - strand at 306.001 kb on - strand at 306.013 kb on - strand at 306.013 kb on - strand at 306.015 kb on - strand at 306.015 kb on - strand at 306.081 kb on - strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.095 kb on + strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.096 kb on - strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.097 kb on + strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.098 kb on - strand at 306.145 kb on - strand at 306.145 kb on - strand at 306.175 kb on - strand at 306.200 kb on - strand at 306.200 kb on - strand at 306.200 kb on - strand at 306.200 kb on - strand at 306.332 kb on - strand, within Sama_0267 at 306.372 kb on - strand, within Sama_0267 at 306.382 kb on - strand, within Sama_0267 at 306.382 kb on - strand, within Sama_0267 at 306.432 kb on + strand, within Sama_0267 at 306.432 kb on + strand, within Sama_0267 at 306.432 kb on + strand, within Sama_0267 at 306.432 kb on + strand, within Sama_0267 at 306.432 kb on + strand, within Sama_0267 at 306.432 kb on + strand, within Sama_0267 at 306.433 kb on - strand, within Sama_0267 at 306.478 kb on + strand, within Sama_0267 at 306.683 kb on + strand, within Sama_0267 at 306.730 kb on + strand, within Sama_0267 at 306.730 kb on + strand, within Sama_0267 at 306.936 kb on + strand, within Sama_0267 at 306.937 kb on - strand, within Sama_0267 at 306.987 kb on + strand, within Sama_0267 at 307.012 kb on + strand, within Sama_0267 at 307.012 kb on + strand, within Sama_0267 at 307.012 kb on + strand, within Sama_0267 at 307.012 kb on + strand, within Sama_0267 at 307.013 kb on - strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.102 kb on + strand, within Sama_0267 at 307.103 kb on - strand, within Sama_0267 at 307.103 kb on - strand, within Sama_0267 at 307.113 kb on + strand, within Sama_0267 at 307.132 kb on + strand, within Sama_0267 at 307.132 kb on + strand, within Sama_0267 at 307.132 kb on + strand, within Sama_0267 at 307.132 kb on + strand, within Sama_0267 at 307.133 kb on - strand, within Sama_0267 at 307.136 kb on + strand, within Sama_0267 at 307.185 kb on + strand, within Sama_0267 at 307.214 kb on + strand, within Sama_0267 at 307.214 kb on + strand, within Sama_0267 at 307.214 kb on + strand, within Sama_0267 at 307.214 kb on + strand, within Sama_0267 at 307.215 kb on - strand, within Sama_0267 at 307.215 kb on - strand, within Sama_0267 at 307.347 kb on + strand, within Sama_0267 at 307.347 kb on + strand, within Sama_0267 at 307.347 kb on + strand, within Sama_0267 at 307.347 kb on + strand, within Sama_0267 at 307.348 kb on - strand, within Sama_0267 at 307.348 kb on - strand, within Sama_0267 at 307.348 kb on - strand, within Sama_0267 at 307.348 kb on - strand, within Sama_0267 at 307.348 kb on - strand, within Sama_0267 at 307.348 kb on - strand, within Sama_0267 at 307.348 kb on - strand, within Sama_0267 at 307.402 kb on - strand, within Sama_0267 at 307.488 kb on + strand at 307.488 kb on + strand at 307.489 kb on - strand at 307.489 kb on - strand at 307.626 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.641 kb on + strand at 307.642 kb on - strand at 307.642 kb on - strand at 307.642 kb on - strand at 307.642 kb on - strand at 307.642 kb on - strand at 307.642 kb on - strand at 307.655 kb on + strand at 307.655 kb on + strand at 307.655 kb on + strand at 307.655 kb on + strand at 307.656 kb on - strand at 307.685 kb on + strand at 307.685 kb on + strand at 307.685 kb on + strand at 307.685 kb on + strand at 307.686 kb on - strand at 307.686 kb on - strand at 307.686 kb on - strand at 307.686 kb on - strand at 307.686 kb on - strand at 307.692 kb on + strand at 307.692 kb on + strand at 307.692 kb on + strand at 307.692 kb on + strand at 307.693 kb on - strand at 307.693 kb on - strand at 307.693 kb on - strand at 307.693 kb on - strand at 307.693 kb on - strand at 307.693 kb on - strand at 307.716 kb on + strand at 307.716 kb on + strand at 307.717 kb on - strand at 307.717 kb on - strand at 307.717 kb on - strand at 307.717 kb on - strand at 307.736 kb on - strand at 307.736 kb on - strand at 307.753 kb on + strand at 307.753 kb on + strand at 307.754 kb on - strand at 307.843 kb on - strand, within Sama_0268 at 307.851 kb on + strand, within Sama_0268 at 307.852 kb on - strand, within Sama_0268 at 308.078 kb on + strand, within Sama_0268 at 308.078 kb on + strand, within Sama_0268 at 308.116 kb on + strand, within Sama_0268 at 308.145 kb on - strand, within Sama_0268 at 308.181 kb on + strand, within Sama_0268 at 308.193 kb on + strand, within Sama_0268 at 308.193 kb on + strand, within Sama_0268 at 308.193 kb on + strand, within Sama_0268 at 308.193 kb on + strand, within Sama_0268 at 308.193 kb on + strand, within Sama_0268 at 308.193 kb on + strand, within Sama_0268 at 308.194 kb on - strand, within Sama_0268 at 308.194 kb on - strand, within Sama_0268 at 308.194 kb on - strand, within Sama_0268 at 308.213 kb on + strand, within Sama_0268 at 308.214 kb on - strand, within Sama_0268 at 308.214 kb on - strand, within Sama_0268 at 308.234 kb on + strand, within Sama_0268 at 308.234 kb on + strand, within Sama_0268 at 308.235 kb on - strand, within Sama_0268 at 308.235 kb on - strand, within Sama_0268 at 308.235 kb on - strand, within Sama_0268 at 308.235 kb on - strand, within Sama_0268 at 308.235 kb on - strand, within Sama_0268 at 308.235 kb on - strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.244 kb on + strand, within Sama_0268 at 308.245 kb on - strand, within Sama_0268 at 308.245 kb on - strand, within Sama_0268 at 308.245 kb on - strand, within Sama_0268 at 308.245 kb on - strand, within Sama_0268 at 308.245 kb on - strand, within Sama_0268 at 308.245 kb on - strand, within Sama_0268 at 308.245 kb on - strand, within Sama_0268 at 308.265 kb on + strand, within Sama_0268 at 308.265 kb on + strand, within Sama_0268 at 308.265 kb on + strand, within Sama_0268 at 308.266 kb on - strand, within Sama_0268 at 308.266 kb on - strand, within Sama_0268 at 308.279 kb on - strand, within Sama_0268 at 308.373 kb on + strand, within Sama_0268 at 308.374 kb on - strand, within Sama_0268 at 308.374 kb on - strand, within Sama_0268 at 308.374 kb on - strand, within Sama_0268 at 308.374 kb on - strand, within Sama_0268 at 308.376 kb on + strand, within Sama_0268 at 308.377 kb on - strand, within Sama_0268 at 308.417 kb on + strand, within Sama_0268 at 308.417 kb on + strand, within Sama_0268 at 308.417 kb on + strand, within Sama_0268 at 308.417 kb on + strand, within Sama_0268 at 308.417 kb on + strand, within Sama_0268 at 308.418 kb on - strand, within Sama_0268 at 308.418 kb on - strand, within Sama_0268 at 308.418 kb on - strand, within Sama_0268 at 308.418 kb on - strand, within Sama_0268 at 308.418 kb on - strand, within Sama_0268 at 308.501 kb on - strand at 308.501 kb on - strand at 308.504 kb on + strand at 308.504 kb on + strand at 308.504 kb on + strand at 308.504 kb on + strand at 308.504 kb on + strand at 308.504 kb on + strand at 308.505 kb on - strand at 308.505 kb on - strand at 308.505 kb on - strand at 308.527 kb on - strand at 308.527 kb on - strand at 308.547 kb on + strand at 308.547 kb on + strand at 308.547 kb on + strand at 308.547 kb on + strand at 308.547 kb on + strand at 308.547 kb on + strand at 308.548 kb on - strand at 308.589 kb on + strand at 308.589 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine remove 305,218 + -1.2 305,219 - +1.2 305,219 - +2.1 305,219 - +0.8 305,225 - +1.2 305,238 - +1.6 305,238 - +0.8 305,263 - +1.6 305,263 - +0.0 305,301 - -1.2 305,301 - -1.0 305,305 + +1.9 305,305 + +0.3 305,306 - -1.6 305,306 - -2.3 305,306 - -1.4 305,333 + -0.9 305,334 - +1.4 305,339 + -1.0 305,339 + +1.4 305,339 + +0.2 305,339 + -0.6 305,340 - -0.3 305,340 - +0.1 305,373 + -2.3 306,001 - -0.2 306,001 - -2.2 306,013 - -2.5 306,013 - -1.2 306,015 - -2.3 306,015 - -1.4 306,081 - +0.2 306,095 + +0.5 306,095 + -0.3 306,095 + +2.7 306,095 + -1.0 306,095 + -1.5 306,095 + -0.3 306,095 + +0.8 306,095 + -0.6 306,095 + -0.0 306,095 + -0.6 306,095 + +0.4 306,096 - -1.4 306,096 - -0.0 306,096 - +0.7 306,096 - -0.3 306,096 - -0.5 306,096 - +0.5 306,096 - -2.2 306,096 - +2.8 306,096 - -1.6 306,096 - -0.9 306,096 - -1.1 306,097 + -0.4 306,097 + +0.4 306,097 + +2.0 306,097 + -0.1 306,097 + -0.1 306,097 + -2.1 306,097 + -0.3 306,097 + +0.7 306,097 + -1.0 306,098 - -1.6 306,098 - -1.4 306,098 - -1.8 306,098 - -0.1 306,098 - -0.2 306,145 - -1.2 306,145 - -1.1 306,175 - -0.1 306,200 - -0.2 306,200 - +0.0 306,200 - -0.2 306,200 - +1.7 306,332 - Sama_0267 0.14 -0.1 306,372 - Sama_0267 0.17 -1.3 306,382 - Sama_0267 0.17 +0.4 306,382 - Sama_0267 0.17 +1.2 306,432 + Sama_0267 0.21 +0.2 306,432 + Sama_0267 0.21 +1.5 306,432 + Sama_0267 0.21 +0.5 306,432 + Sama_0267 0.21 +0.1 306,432 + Sama_0267 0.21 +0.2 306,432 + Sama_0267 0.21 -0.7 306,433 - Sama_0267 0.21 +1.4 306,478 + Sama_0267 0.24 +1.1 306,683 + Sama_0267 0.38 +0.2 306,730 + Sama_0267 0.41 -0.1 306,730 + Sama_0267 0.41 +0.1 306,936 + Sama_0267 0.55 +0.1 306,937 - Sama_0267 0.55 -0.6 306,987 + Sama_0267 0.58 +1.4 307,012 + Sama_0267 0.60 +0.2 307,012 + Sama_0267 0.60 -0.3 307,012 + Sama_0267 0.60 -2.4 307,012 + Sama_0267 0.60 +0.4 307,013 - Sama_0267 0.60 +0.7 307,102 + Sama_0267 0.66 -0.1 307,102 + Sama_0267 0.66 -0.2 307,102 + Sama_0267 0.66 +1.0 307,102 + Sama_0267 0.66 -1.0 307,102 + Sama_0267 0.66 +0.1 307,102 + Sama_0267 0.66 +0.7 307,102 + Sama_0267 0.66 -0.4 307,102 + Sama_0267 0.66 -0.2 307,103 - Sama_0267 0.66 +0.7 307,103 - Sama_0267 0.66 +0.6 307,113 + Sama_0267 0.67 +0.4 307,132 + Sama_0267 0.68 +1.6 307,132 + Sama_0267 0.68 +0.1 307,132 + Sama_0267 0.68 +0.8 307,132 + Sama_0267 0.68 -1.4 307,133 - Sama_0267 0.68 +2.4 307,136 + Sama_0267 0.68 -0.0 307,185 + Sama_0267 0.71 +0.9 307,214 + Sama_0267 0.73 +1.0 307,214 + Sama_0267 0.73 +0.3 307,214 + Sama_0267 0.73 +0.4 307,214 + Sama_0267 0.73 +0.6 307,215 - Sama_0267 0.73 +0.7 307,215 - Sama_0267 0.73 +1.2 307,347 + Sama_0267 0.82 +0.1 307,347 + Sama_0267 0.82 +0.6 307,347 + Sama_0267 0.82 +0.8 307,347 + Sama_0267 0.82 -2.3 307,348 - Sama_0267 0.82 +1.0 307,348 - Sama_0267 0.82 +0.3 307,348 - Sama_0267 0.82 -0.7 307,348 - Sama_0267 0.82 -1.1 307,348 - Sama_0267 0.82 -0.7 307,348 - Sama_0267 0.82 +2.4 307,348 - Sama_0267 0.82 +0.3 307,402 - Sama_0267 0.86 -2.0 307,488 + +0.4 307,488 + +1.1 307,489 - +0.4 307,489 - -0.2 307,626 + -0.1 307,641 + -2.0 307,641 + +0.5 307,641 + -0.5 307,641 + -1.6 307,641 + +0.7 307,641 + -1.1 307,641 + -0.6 307,641 + -0.2 307,641 + -1.3 307,641 + -0.2 307,641 + -1.1 307,641 + -0.5 307,641 + -2.7 307,641 + -0.2 307,642 - -0.1 307,642 - -0.1 307,642 - -0.2 307,642 - -2.5 307,642 - -0.1 307,642 - +0.6 307,655 + -0.2 307,655 + +0.4 307,655 + -0.8 307,655 + +1.0 307,656 - +0.7 307,685 + -0.3 307,685 + +0.9 307,685 + -0.0 307,685 + +1.2 307,686 - +0.0 307,686 - -2.1 307,686 - -0.2 307,686 - +0.1 307,686 - +1.1 307,692 + +0.6 307,692 + -1.4 307,692 + +0.7 307,692 + -0.3 307,693 - +1.2 307,693 - +0.4 307,693 - -0.1 307,693 - +0.4 307,693 - -2.3 307,693 - +0.5 307,716 + +0.4 307,716 + -0.2 307,717 - +0.3 307,717 - -0.2 307,717 - +0.1 307,717 - +1.4 307,736 - -2.1 307,736 - -1.2 307,753 + -0.2 307,753 + -0.5 307,754 - -1.1 307,843 - Sama_0268 0.17 +0.3 307,851 + Sama_0268 0.18 -1.0 307,852 - Sama_0268 0.18 +0.5 308,078 + Sama_0268 0.44 -0.8 308,078 + Sama_0268 0.44 +0.5 308,116 + Sama_0268 0.49 -0.3 308,145 - Sama_0268 0.52 +1.2 308,181 + Sama_0268 0.56 -0.5 308,193 + Sama_0268 0.58 -1.4 308,193 + Sama_0268 0.58 -0.7 308,193 + Sama_0268 0.58 -0.1 308,193 + Sama_0268 0.58 -0.3 308,193 + Sama_0268 0.58 -3.3 308,193 + Sama_0268 0.58 +0.4 308,194 - Sama_0268 0.58 -0.5 308,194 - Sama_0268 0.58 -0.3 308,194 - Sama_0268 0.58 -0.5 308,213 + Sama_0268 0.60 -0.1 308,214 - Sama_0268 0.60 -0.8 308,214 - Sama_0268 0.60 +0.8 308,234 + Sama_0268 0.62 +0.8 308,234 + Sama_0268 0.62 -1.1 308,235 - Sama_0268 0.62 +1.4 308,235 - Sama_0268 0.62 +1.0 308,235 - Sama_0268 0.62 +3.2 308,235 - Sama_0268 0.62 +0.5 308,235 - Sama_0268 0.62 +0.2 308,235 - Sama_0268 0.62 +0.7 308,244 + Sama_0268 0.63 +0.1 308,244 + Sama_0268 0.63 -1.4 308,244 + Sama_0268 0.63 -1.0 308,244 + Sama_0268 0.63 -0.4 308,244 + Sama_0268 0.63 -1.2 308,244 + Sama_0268 0.63 +0.3 308,244 + Sama_0268 0.63 +1.9 308,244 + Sama_0268 0.63 +0.3 308,245 - Sama_0268 0.64 +0.4 308,245 - Sama_0268 0.64 +0.4 308,245 - Sama_0268 0.64 -1.4 308,245 - Sama_0268 0.64 -0.4 308,245 - Sama_0268 0.64 -1.4 308,245 - Sama_0268 0.64 -2.9 308,245 - Sama_0268 0.64 +0.0 308,265 + Sama_0268 0.66 -1.7 308,265 + Sama_0268 0.66 -0.5 308,265 + Sama_0268 0.66 -0.1 308,266 - Sama_0268 0.66 +0.1 308,266 - Sama_0268 0.66 +0.3 308,279 - Sama_0268 0.67 +0.0 308,373 + Sama_0268 0.78 +2.1 308,374 - Sama_0268 0.78 -0.2 308,374 - Sama_0268 0.78 -0.8 308,374 - Sama_0268 0.78 +0.6 308,374 - Sama_0268 0.78 +1.2 308,376 + Sama_0268 0.79 +0.4 308,377 - Sama_0268 0.79 +0.9 308,417 + Sama_0268 0.83 -1.5 308,417 + Sama_0268 0.83 -1.3 308,417 + Sama_0268 0.83 +1.7 308,417 + Sama_0268 0.83 -2.1 308,417 + Sama_0268 0.83 +0.7 308,418 - Sama_0268 0.84 +1.7 308,418 - Sama_0268 0.84 -1.8 308,418 - Sama_0268 0.84 -0.2 308,418 - Sama_0268 0.84 +0.9 308,418 - Sama_0268 0.84 -1.3 308,501 - -2.6 308,501 - +1.6 308,504 + -1.0 308,504 + +1.1 308,504 + -1.6 308,504 + -0.8 308,504 + +0.4 308,504 + +0.4 308,505 - +0.8 308,505 - -1.3 308,505 - +1.5 308,527 - +0.4 308,527 - -1.1 308,547 + +0.4 308,547 + +2.4 308,547 + +1.1 308,547 + -0.1 308,547 + -1.0 308,547 + +0.6 308,548 - -1.0 308,589 + +0.2 308,589 + +0.8
Or see this region's nucleotide sequence