Strain Fitness in Shewanella amazonensis SB2B around Sama_0024

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
21,404	+				-0.4
21,404	+				-0.2
21,421	+				-0.2
21,421	+				+2.0
21,421	+				-0.3
21,421	+				+0.4
21,421	+				+1.7
21,421	+				+0.2
21,421	+				-2.0
21,421	+				-0.3
21,421	+				+0.4
21,421	+				-1.0
21,421	+				-2.0
21,421	+				+1.0
21,421	+				-1.6
21,421	+				+2.4
21,421	+				-0.2
21,421	+				-0.1
21,421	+				+0.6
21,421	+				+0.6
21,422	-				+1.0
21,422	-				-3.0
21,422	-				-0.2
21,422	-				-0.5
21,422	-				-0.2
21,422	-				+0.8
21,422	-				+0.6
21,422	-				-0.7
21,425	+				+2.7
21,425	+				-0.4
21,425	+				+0.2
21,425	+				-0.6
21,425	+				-2.5
21,441	-				-2.5
21,492	+		Sama_0023	0.11	-1.0
21,492	+		Sama_0023	0.11	-1.4
21,492	+		Sama_0023	0.11	+3.0
21,492	+		Sama_0023	0.11	-2.0
21,493	-		Sama_0023	0.11	-0.2
21,493	-		Sama_0023	0.11	+0.6
21,493	-		Sama_0023	0.11	-1.8
21,493	-		Sama_0023	0.11	-0.8
21,500	+		Sama_0023	0.12	-0.7
21,501	-		Sama_0023	0.12	-1.0
21,510	-		Sama_0023	0.14	+0.4
21,510	-		Sama_0023	0.14	+1.1
21,510	-		Sama_0023	0.14	+0.0
21,510	-		Sama_0023	0.14	+1.7
21,513	+		Sama_0023	0.14	+0.1
21,513	+		Sama_0023	0.14	-2.6
21,513	+		Sama_0023	0.14	-0.3
21,513	+		Sama_0023	0.14	-0.9
21,514	-		Sama_0023	0.14	-0.0
21,514	-		Sama_0023	0.14	+0.4
21,514	-		Sama_0023	0.14	+0.1
21,514	-		Sama_0023	0.14	-0.0
21,515	+		Sama_0023	0.14	+0.1
21,515	+		Sama_0023	0.14	-0.3
21,515	+		Sama_0023	0.14	-0.3
21,515	+		Sama_0023	0.14	+1.1
21,515	+		Sama_0023	0.14	-1.2
21,515	+		Sama_0023	0.14	-1.2
21,515	+		Sama_0023	0.14	+0.7
21,515	+		Sama_0023	0.14	+0.4
21,515	+		Sama_0023	0.14	-0.6
21,515	+		Sama_0023	0.14	-2.9
21,516	-		Sama_0023	0.14	-2.0
21,516	-		Sama_0023	0.14	+1.7
21,516	-		Sama_0023	0.14	-0.2
21,516	-		Sama_0023	0.14	-2.0
21,516	-		Sama_0023	0.14	-2.2
21,516	-		Sama_0023	0.14	-0.4
21,516	-		Sama_0023	0.14	-1.1
21,516	-		Sama_0023	0.14	-2.2
21,547	+		Sama_0023	0.19	-0.2
21,548	-		Sama_0023	0.19	-1.9
21,548	-		Sama_0023	0.19	-1.2
21,570	+		Sama_0023	0.23	+0.2
21,570	+		Sama_0023	0.23	-3.4
21,570	+		Sama_0023	0.23	-0.2
21,571	-		Sama_0023	0.23	-1.8
21,571	-		Sama_0023	0.23	-0.2
21,591	+		Sama_0023	0.26	+0.1
21,591	+		Sama_0023	0.26	-1.9
21,592	-		Sama_0023	0.26	+2.0
21,592	-		Sama_0023	0.26	-0.9
21,592	-		Sama_0023	0.26	-1.3
21,592	-		Sama_0023	0.26	-0.4
21,627	+		Sama_0023	0.31	-0.8
21,628	-		Sama_0023	0.31	-2.0
21,628	-		Sama_0023	0.31	+0.5
21,628	-		Sama_0023	0.31	-1.8
21,652	+		Sama_0023	0.35	+0.7
21,652	+		Sama_0023	0.35	-0.3
21,666	+		Sama_0023	0.37	+1.8
21,666	+		Sama_0023	0.37	-0.9
21,667	-		Sama_0023	0.37	+0.3
21,759	+		Sama_0023	0.51	-0.4
21,759	+		Sama_0023	0.51	-1.0
21,759	+		Sama_0023	0.51	-0.2
21,759	+		Sama_0023	0.51	-0.3
21,760	-		Sama_0023	0.51	+0.0
21,784	+		Sama_0023	0.55	+0.2
21,785	-		Sama_0023	0.55	-0.9
21,800	+		Sama_0023	0.57	-1.3
21,800	+		Sama_0023	0.57	-1.6
21,800	+		Sama_0023	0.57	-0.0
21,800	+		Sama_0023	0.57	+0.1
21,800	+		Sama_0023	0.57	-2.2
21,800	+		Sama_0023	0.57	-1.2
21,800	+		Sama_0023	0.57	+1.1
21,800	+		Sama_0023	0.57	-2.4
21,800	+		Sama_0023	0.57	-3.0
21,800	+		Sama_0023	0.57	+0.1
21,801	-		Sama_0023	0.57	+0.1
21,801	-		Sama_0023	0.57	-0.8
21,801	-		Sama_0023	0.57	-0.0
21,801	-		Sama_0023	0.57	-0.8
21,801	-		Sama_0023	0.57	-1.5
21,801	-		Sama_0023	0.57	-1.6
21,801	-		Sama_0023	0.57	-0.0
21,801	-		Sama_0023	0.57	-0.2
21,801	-		Sama_0023	0.57	-1.3
21,828	-		Sama_0023	0.62	+1.1
21,828	-		Sama_0023	0.62	-0.1
21,855	+		Sama_0023	0.66	-0.2
21,900	+		Sama_0023	0.72	-1.5
21,901	-		Sama_0023	0.73	-0.0
21,917	+		Sama_0023	0.75	+2.0
21,917	+		Sama_0023	0.75	-0.0
21,962	+		Sama_0023	0.82	+0.6
21,962	+		Sama_0023	0.82	-0.4
21,963	-		Sama_0023	0.82	+1.6
21,977	+		Sama_0023	0.84	+0.2
21,977	+		Sama_0023	0.84	-0.1
21,989	+		Sama_0023	0.86	-1.5
21,990	-		Sama_0023	0.86	-0.2
21,990	-		Sama_0023	0.86	+0.1
22,023	+				-2.1
22,035	+				-0.2
22,035	+				-0.0
22,035	+				-2.0
22,035	+				-1.8
22,035	+				-0.6
22,036	-				+1.0
22,036	-				-2.0
22,036	-				+0.0
22,036	-				+1.4
22,059	+				-2.0
22,059	+				-0.9
22,059	+				-1.4
22,059	+				-1.2
22,059	+				-0.8
22,059	+				+0.0
22,059	+				+0.1
22,059	+				-0.2
22,059	+				-0.5
22,060	-				+0.3
22,060	-				-2.5
22,071	+				+0.8
22,072	-				+0.8
22,072	-				-2.3
22,089	+				-0.8
22,090	-				-1.2
22,090	-				-2.7
22,090	-				-1.5
22,090	-				+0.2
22,182	-				-0.6
22,202	+				+0.4
22,202	+				-0.2
22,203	-				-0.2
22,203	-				-0.8
22,203	-				-1.1
22,222	+				-0.6
22,222	+				-0.5
22,222	+				-1.2
22,223	-				-0.2
22,263	+				+1.4
22,264	-				-1.9
22,264	-				+0.2
22,266	+				-0.1
22,266	+				-0.8
22,266	+				+0.8
22,267	-				+0.1
22,267	-				-0.5
22,267	-				+0.6
22,267	-				+1.2
22,335	+				+0.6
22,336	-				+0.5
22,373	-				-0.6
22,414	+				-0.6
22,414	+				+0.7
22,414	+				-1.8
22,414	+				-1.2
22,415	-				+1.4
22,415	-				+0.3
22,415	-				+0.6
22,415	-				-0.2
22,423	+				-1.6
22,423	+				-0.9
22,424	-				+1.9
22,452	+		Sama_0024	0.11	+2.1
22,453	-		Sama_0024	0.11	+0.2
22,453	-		Sama_0024	0.11	-1.0
22,453	-		Sama_0024	0.11	-1.3
22,453	-		Sama_0024	0.11	+1.4
22,453	-		Sama_0024	0.11	-0.4
22,477	+		Sama_0024	0.13	-1.9
22,477	+		Sama_0024	0.13	-1.0
22,493	-		Sama_0024	0.15	-0.7
22,493	-		Sama_0024	0.15	-1.2
22,518	-		Sama_0024	0.17	-0.9
22,543	+		Sama_0024	0.20	-0.7
22,543	+		Sama_0024	0.20	-0.3
22,544	-		Sama_0024	0.20	-1.0
22,544	-		Sama_0024	0.20	+0.2
22,549	+		Sama_0024	0.20	-0.8
22,549	+		Sama_0024	0.20	+2.5
22,549	+		Sama_0024	0.20	-0.8
22,549	+		Sama_0024	0.20	-0.3
22,550	-		Sama_0024	0.20	-1.3
22,550	-		Sama_0024	0.20	-1.0
22,550	-		Sama_0024	0.20	+1.2
22,550	-		Sama_0024	0.20	+0.4
22,721	-		Sama_0024	0.36	+1.7
22,740	+		Sama_0024	0.38	-0.5
22,740	+		Sama_0024	0.38	+1.0
22,740	+		Sama_0024	0.38	-0.9
22,740	+		Sama_0024	0.38	+0.1
22,741	-		Sama_0024	0.38	-1.2
22,741	-		Sama_0024	0.38	-0.6
22,741	-		Sama_0024	0.38	+0.4
22,741	-		Sama_0024	0.38	+1.4
22,741	-		Sama_0024	0.38	+0.0
22,741	-		Sama_0024	0.38	-0.2
22,741	-		Sama_0024	0.38	-2.2
22,741	-		Sama_0024	0.38	+1.1
22,741	-		Sama_0024	0.38	+1.4
22,741	-		Sama_0024	0.38	-2.0
22,741	-		Sama_0024	0.38	-0.4
22,741	-		Sama_0024	0.38	-1.2
22,741	-		Sama_0024	0.38	+0.3
22,765	+		Sama_0024	0.41	+0.4
22,765	+		Sama_0024	0.41	-0.4
22,765	+		Sama_0024	0.41	+0.6
22,765	+		Sama_0024	0.41	-0.4
22,766	-		Sama_0024	0.41	+0.1
22,766	-		Sama_0024	0.41	+1.1
22,766	-		Sama_0024	0.41	+0.5
22,766	-		Sama_0024	0.41	-0.4
22,766	-		Sama_0024	0.41	-2.0
22,766	-		Sama_0024	0.41	+0.8
22,766	-		Sama_0024	0.41	+0.4
22,798	+		Sama_0024	0.44	-2.7
22,799	-		Sama_0024	0.44	+0.6
22,799	-		Sama_0024	0.44	+0.7
22,799	-		Sama_0024	0.44	+1.6
22,799	-		Sama_0024	0.44	-0.4
22,801	+		Sama_0024	0.44	-0.6
22,801	+		Sama_0024	0.44	+0.1
22,801	+		Sama_0024	0.44	+1.4
22,802	-		Sama_0024	0.44	+1.3
22,802	-		Sama_0024	0.44	+0.2
22,867	+		Sama_0024	0.50	-2.2
22,901	+		Sama_0024	0.53	+0.1
22,901	+		Sama_0024	0.53	-1.2
22,904	+		Sama_0024	0.54	-0.0
22,952	+		Sama_0024	0.58	-0.0
22,952	+		Sama_0024	0.58	+2.1
22,952	+		Sama_0024	0.58	-2.8
22,987	+		Sama_0024	0.62	-0.2
22,988	-		Sama_0024	0.62	+1.6
22,996	+		Sama_0024	0.62	+0.6
22,996	+		Sama_0024	0.62	+0.4
22,996	+		Sama_0024	0.62	-0.3
22,997	-		Sama_0024	0.62	-1.8
22,997	-		Sama_0024	0.62	-0.2
23,009	-		Sama_0024	0.64	+0.4
23,009	-		Sama_0024	0.64	+0.5
23,019	+		Sama_0024	0.65	-0.6
23,019	+		Sama_0024	0.65	-0.4
23,019	+		Sama_0024	0.65	-1.9
23,019	+		Sama_0024	0.65	-1.9
23,019	+		Sama_0024	0.65	+1.3
23,019	+		Sama_0024	0.65	+0.7
23,020	-		Sama_0024	0.65	-0.6
23,020	-		Sama_0024	0.65	-0.0
23,020	-		Sama_0024	0.65	-1.2
23,020	-		Sama_0024	0.65	+0.8
23,020	-		Sama_0024	0.65	-0.3
23,020	-		Sama_0024	0.65	+0.9
23,028	+		Sama_0024	0.65	-2.8
23,110	+		Sama_0024	0.73	-1.4
23,133	+		Sama_0024	0.75	-0.8
23,142	+		Sama_0024	0.76	+0.8
23,143	-		Sama_0024	0.76	+1.7
23,143	-		Sama_0024	0.76	-0.3
23,212	+		Sama_0024	0.83	-1.8
23,212	+		Sama_0024	0.83	+0.1
23,213	-		Sama_0024	0.83	-1.5
23,213	-		Sama_0024	0.83	+1.2
23,240	-		Sama_0024	0.86	-0.7
23,277	+		Sama_0024	0.89	-1.0
23,277	+		Sama_0024	0.89	+1.1
23,277	+		Sama_0024	0.89	+0.7
23,277	+		Sama_0024	0.89	-0.4
23,278	-		Sama_0024	0.89	+1.1
23,278	-		Sama_0024	0.89	+0.6
23,278	-		Sama_0024	0.89	+0.4
23,278	-		Sama_0024	0.89	-1.6
23,335	+				-0.6
23,395	+				+0.2
23,395	+				-0.6
23,395	+				-0.6
23,395	+				-1.7
23,395	+				-0.8
23,395	+				-1.2
23,395	+				+0.2
23,395	+				+0.6
23,395	+				-3.2
23,395	+				-0.8
23,395	+				+0.4
23,395	+				+0.5
23,395	+				+2.4
23,396	-				-0.5
23,396	-				+0.1
23,396	-				-0.6
23,396	-				-1.2
23,396	-				+0.1
23,396	-				+0.2
23,396	-				+0.6
23,396	-				-0.3
23,396	-				+0.1
23,403	+				-1.4
23,431	+				-0.5
23,447	+				-1.9
23,447	+				-0.6
23,448	-				+0.3
23,448	-				-0.1
23,453	+				-0.4
23,453	+				-2.2
23,453	+				+0.1
23,453	+				+0.8
23,453	+				-0.8
23,454	-				+0.1
23,454	-				-1.4
23,454	-				-0.1
23,454	-				+0.2
23,454	-				+0.1
23,454	-				-1.3
23,458	+				+0.7
23,458	+				+0.1
23,458	+				-2.3
23,458	+				-0.2
23,458	+				+1.0
23,458	+				-0.2
23,459	-				-0.7
23,459	-				+1.3
23,459	-				-0.6