Strain Fitness in Shewanella oneidensis MR-1 around SO_t078

Experiment: Aluminum chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aluminum chloride 1 mM
3,394,150	+		SO3258	0.20	+0.4
3,394,244	+		SO3258	0.28	+0.6
3,394,245	-		SO3258	0.28	+0.1
3,394,283	+		SO3258	0.32	+0.7
3,394,283	+		SO3258	0.32	+0.5
3,394,311	+		SO3258	0.34	+0.9
3,394,332	+		SO3258	0.36	+0.1
3,394,332	+		SO3258	0.36	+0.5
3,394,340	-		SO3258	0.36	-0.3
3,394,340	-		SO3258	0.36	+0.1
3,394,340	-		SO3258	0.36	-1.4
3,394,340	-		SO3258	0.36	-0.3
3,394,424	-		SO3258	0.44	-0.5
3,394,445	+		SO3258	0.45	+0.2
3,394,495	-		SO3258	0.50	+0.1
3,394,561	+		SO3258	0.55	+0.8
3,394,571	+		SO3258	0.56	+0.0
3,394,664	+		SO3258	0.64	-0.1
3,394,667	-		SO3258	0.64	+0.3
3,394,717	-		SO3258	0.68	-0.1
3,394,747	+		SO3258	0.71	-0.2
3,394,836	+		SO3258	0.79	-0.2
3,394,844	-		SO3258	0.79	-0.2
3,394,892	-		SO3258	0.83	-0.1
3,395,012	+				+0.3
3,395,054	-				+0.2
3,395,160	+	tRNA-Arg-9	SO_t078	0.22	-1.5
3,395,160	+	tRNA-Arg-9	SO_t078	0.22	-1.0
3,395,168	-	tRNA-Arg-9	SO_t078	0.33	-1.7
3,395,168	-	tRNA-Arg-9	SO_t078	0.33	-1.3
3,395,168	-	tRNA-Arg-9	SO_t078	0.33	-0.6
3,395,371	+				-0.6
3,395,371	+				+1.4
3,395,379	-				+0.1
3,395,412	+		SO3259	0.11	+0.8
3,395,503	+		SO3259	0.18	+0.2
3,395,668	-		SO3259	0.30	+0.4
3,395,832	-		SO3259	0.43	-0.2
3,395,911	-		SO3259	0.49	+0.1
3,395,911	-		SO3259	0.49	+0.6
3,395,911	-		SO3259	0.49	-0.5
3,395,959	-		SO3259	0.52	+0.3
3,395,993	-		SO3259	0.55	+0.8
3,396,018	+		SO3259	0.57	+0.3
3,396,018	+		SO3259	0.57	-0.8
3,396,026	-		SO3259	0.57	-0.3
3,396,026	-		SO3259	0.57	-0.4
3,396,130	+		SO3259	0.65	+0.3
3,396,130	+		SO3259	0.65	+0.3
3,396,130	+		SO3259	0.65	-0.2
3,396,130	+		SO3259	0.65	+0.1
3,396,138	-		SO3259	0.66	+0.1
3,396,138	-		SO3259	0.66	-0.0
3,396,138	-		SO3259	0.66	+0.2
3,396,138	-		SO3259	0.66	-0.2
3,396,138	-		SO3259	0.66	+1.4
3,396,212	+		SO3259	0.71	-0.0