Strain Fitness in Shewanella oneidensis MR-1 around SO3031
Experiment: Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 1 mM |
|---|---|---|---|---|---|
| remove | |||||
| 3,140,626 | - | alcA | SO3030 | 0.41 | -3.9 |
| 3,140,813 | + | alcA | SO3030 | 0.54 | -2.2 |
| 3,140,912 | + | alcA | SO3030 | 0.61 | -2.3 |
| 3,140,980 | + | alcA | SO3030 | 0.65 | -2.3 |
| 3,141,031 | - | alcA | SO3030 | 0.68 | -1.6 |
| 3,141,191 | - | alcA | SO3030 | 0.79 | -3.4 |
| 3,141,250 | - | alcA | SO3030 | 0.83 | -2.2 |
| 3,141,577 | + | SO3031 | 0.12 | -4.0 | |
| 3,141,577 | + | SO3031 | 0.12 | -2.5 | |
| 3,141,769 | - | SO3031 | 0.43 | -2.0 | |
| 3,141,820 | + | SO3031 | 0.51 | -3.2 | |
| 3,142,116 | + | -1.9 | |||
| 3,142,330 | + | -2.9 | |||
| 3,142,376 | + | -2.1 | |||
| 3,142,576 | + | SO3032 | 0.19 | -3.6 | |
| 3,142,576 | + | SO3032 | 0.19 | -2.6 | |
| 3,142,655 | + | SO3032 | 0.23 | -2.4 | |
| 3,143,019 | - | SO3032 | 0.43 | -2.4 |
Or see this region's nucleotide sequence