Strain Fitness in Shewanella oneidensis MR-1 around SO2008

Experiment: Aluminum chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aluminum chloride 1 mM
2,105,530	+		SO2006	0.81	+1.0
2,105,544	+		SO2006	0.83	-0.3
2,105,664	+				+1.1
2,105,713	+				+0.4
2,105,721	-				-0.5
2,105,746	+				-0.1
2,105,749	-				+0.8
2,105,760	+				+0.3
2,105,760	+				+0.0
2,105,762	+				+0.6
2,105,782	-				+0.6
2,105,785	-				+0.1
2,105,804	+				-0.3
2,105,817	-				-0.4
2,105,900	+				+0.3
2,105,933	+				-0.3
2,106,007	+				-0.5
2,106,022	-		SO2007	0.11	-0.2
2,106,134	-		SO2007	0.37	-0.1
2,106,192	+		SO2007	0.50	+0.2
2,106,193	+		SO2007	0.51	-1.5
2,106,229	+		SO2007	0.59	-0.1
2,106,252	-		SO2007	0.64	-0.0
2,106,310	+		SO2007	0.78	+0.2
2,106,325	+		SO2007	0.81	+0.0
2,106,385	+				-0.1
2,106,453	+				-0.2
2,106,495	-				+0.5
2,106,495	-				+0.8
2,106,519	+				+0.9
2,106,527	-				+0.1
2,106,712	+		SO2008	0.26	+0.3
2,106,841	+		SO2008	0.41	+0.1
2,106,875	-		SO2008	0.45	-0.5
2,106,947	-		SO2008	0.54	+0.7
2,106,983	-		SO2008	0.58	+0.1
2,107,032	+		SO2008	0.64	-0.9
2,107,189	-		SO2008	0.82	+0.5
2,107,225	+		SO2008	0.87	+0.8
2,107,311	-				+1.0
2,107,311	-				-0.4
2,107,354	+				-0.0
2,107,405	+				-0.4
2,107,436	-		SO2009	0.13	+0.2
2,107,489	+		SO2009	0.21	+0.1
2,107,505	-		SO2009	0.23	+0.2
2,107,505	-		SO2009	0.23	-0.1
2,107,507	+				-0.6
2,107,507	+		SO2009	0.23	+0.8
2,107,641	-		SO2009	0.41	-0.1
2,107,766	-		SO2009	0.58	+0.5
2,107,831	-		SO2009	0.67	-0.6
2,107,831	-		SO2009	0.67	+0.4
2,107,831	-		SO2009	0.67	+0.1
2,108,014	+				-0.2
2,108,050	+				-0.4
2,108,071	+				-0.3
2,108,079	-				+0.0
2,108,079	-				+1.2
2,108,079	-				-0.0
2,108,079	-				-0.1
2,108,086	-				+0.6
2,108,292	+		SO2010	0.44	+0.1