Strain Fitness in Shewanella oneidensis MR-1 around SO1461

Experiment: Aluminum chloride 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Aluminum chloride 1 mM
1,518,734	-		SO1460	0.31	-0.1
1,518,739	+		SO1460	0.31	+0.8
1,518,739	+		SO1460	0.31	+0.4
1,518,744	+		SO1460	0.32	-0.4
1,518,842	+		SO1460	0.39	-0.1
1,518,863	-		SO1460	0.41	+0.2
1,519,073	-		SO1460	0.56	+0.3
1,519,073	-		SO1460	0.56	+0.5
1,519,209	-		SO1460	0.66	-0.5
1,519,250	+		SO1460	0.69	+0.7
1,519,283	-		SO1460	0.72	+0.1
1,519,469	+		SO1460	0.86	+0.5
1,519,469	+		SO1460	0.86	+0.3
1,519,570	+				+0.1
1,519,602	+				-0.1
1,519,653	+				-0.3
1,519,661	-				-0.5
1,519,703	+				+0.8
1,519,711	-				-0.2
1,519,728	-				-0.4
1,519,817	+				-0.3
1,519,817	+				-0.7
1,519,961	-				-0.9
1,520,015	-				+0.5
1,520,019	+				-0.3
1,520,036	+				-0.9
1,520,036	+				-0.1
1,520,036	+				-0.5
1,520,044	-				-0.4
1,520,044	-				-0.2
1,520,178	-		SO1461	0.12	-1.6
1,520,321	+		SO1461	0.16	-1.2
1,520,339	-		SO1461	0.16	-0.6
1,520,345	-		SO1461	0.16	-0.6
1,520,543	-		SO1461	0.21	-0.1
1,520,780	+		SO1461	0.27	+0.7
1,520,859	+		SO1461	0.29	-0.3
1,520,859	+		SO1461	0.29	-0.3
1,520,859	+		SO1461	0.29	-0.5
1,520,859	+		SO1461	0.29	-1.1
1,520,867	-		SO1461	0.29	-0.6
1,520,867	-		SO1461	0.29	-1.3
1,520,919	-		SO1461	0.30	-0.3
1,520,924	-		SO1461	0.30	-1.2
1,520,981	+		SO1461	0.32	+1.1
1,521,022	-		SO1461	0.33	-0.7
1,521,054	+		SO1461	0.34	+0.2
1,521,081	+		SO1461	0.34	-0.7
1,521,102	-		SO1461	0.35	+0.3
1,521,127	-		SO1461	0.35	-0.2
1,521,165	-		SO1461	0.36	-0.5
1,521,206	-		SO1461	0.37	-0.0
1,521,223	+		SO1461	0.38	+1.2
1,521,231	-		SO1461	0.38	-0.0
1,521,343	+		SO1461	0.41	-0.4
1,521,371	+		SO1461	0.41	-0.1
1,521,428	+		SO1461	0.43	+0.1
1,521,461	+		SO1461	0.43	-1.5
1,521,486	-		SO1461	0.44	-0.2
1,521,516	+		SO1461	0.45	-1.5
1,521,517	-		SO1461	0.45	-0.2
1,521,517	-		SO1461	0.45	-0.1
1,521,526	-		SO1461	0.45	-0.5
1,521,543	-		SO1461	0.45	-0.2
1,521,729	+		SO1461	0.50	-0.6
1,521,731	+		SO1461	0.50	-0.9
1,521,739	-		SO1461	0.50	+0.2
1,521,739	-		SO1461	0.50	-0.5
1,521,791	-		SO1461	0.51	+0.3
1,521,820	+		SO1461	0.52	+0.4
1,521,881	+		SO1461	0.54	+0.4
1,521,898	-		SO1461	0.54	-0.6
1,521,908	-		SO1461	0.54	+0.1
1,521,913	+		SO1461	0.54	+0.5
1,522,016	+		SO1461	0.57	-0.6
1,522,016	+		SO1461	0.57	+0.2
1,522,016	+		SO1461	0.57	-1.2
1,522,024	-		SO1461	0.57	+0.6
1,522,070	-		SO1461	0.58	-0.3
1,522,102	-		SO1461	0.59	-2.1
1,522,208	-		SO1461	0.61	-0.1
1,522,257	+		SO1461	0.63	-0.2
1,522,443	-		SO1461	0.67	-2.9
1,522,679	+		SO1461	0.73	+0.3
1,522,770	-		SO1461	0.75	-0.2
1,522,843	+		SO1461	0.77	+0.4
1,522,843	+		SO1461	0.77	-0.8
1,522,850	+		SO1461	0.77	-0.8
1,522,850	+		SO1461	0.77	-0.1
1,522,858	-		SO1461	0.77	+1.1
1,522,858	-		SO1461	0.77	-0.5
1,522,938	+		SO1461	0.79	-0.4
1,522,945	-		SO1461	0.79	+0.2
1,522,979	+		SO1461	0.80	+0.1
1,523,015	+		SO1461	0.81	-0.6
1,523,023	-		SO1461	0.81	-0.2
1,523,023	-		SO1461	0.81	-0.6
1,523,125	+		SO1461	0.84	+1.0
1,523,125	+		SO1461	0.84	-0.6
1,523,144	+		SO1461	0.84	-0.2
1,523,144	+		SO1461	0.84	+0.0
1,523,144	+		SO1461	0.84	-0.7
1,523,182	-		SO1461	0.85	+0.0
1,523,182	-		SO1461	0.85	-1.2
1,523,218	-		SO1461	0.86	-0.6
1,523,222	-		SO1461	0.86	-0.9
1,523,248	+		SO1461	0.87	+0.1
1,523,250	+		SO1461	0.87	-0.7
1,523,407	+				-0.3
1,523,408	+				+0.1
1,523,497	-				+0.0
1,523,572	+				-0.2
1,523,613	-				-0.3
1,523,613	-				+0.5
1,523,613	-				-0.2
1,523,613	-				-0.3
1,523,758	+				-0.1
1,523,760	+				+1.7
1,523,773	-				-0.3
1,523,787	+				-0.9
1,523,801	-				-0.5
1,523,884	-				+0.0
1,523,899	+				-0.5
1,523,940	-				-1.5
1,523,955	-				+0.1
1,523,965	-		SO1462	0.10	-0.7
1,524,264	+		SO1462	0.28	-0.4
1,524,277	+		SO1462	0.29	-0.0
1,524,310	+		SO1462	0.31	-0.1
1,524,310	+		SO1462	0.31	-1.1
1,524,318	-		SO1462	0.32	+0.5
1,524,318	-		SO1462	0.32	+0.3
1,524,318	-		SO1462	0.32	-0.2
1,524,404	-		SO1462	0.37	+0.6
1,524,433	+		SO1462	0.39	-1.1
1,524,489	+		SO1462	0.42	-1.0
1,524,490	-		SO1462	0.42	-0.3
1,524,527	+		SO1462	0.44	-0.6
1,524,529	-		SO1462	0.45	-0.4
1,524,542	+		SO1462	0.45	-0.3
1,524,548	+		SO1462	0.46	-0.9
1,524,624	-		SO1462	0.50	-0.3
1,524,673	-		SO1462	0.53	-0.3
1,524,726	+		SO1462	0.56	-0.7