Strain Fitness in Shewanella oneidensis MR-1 around SO1346
Experiment: Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Aluminum chloride 1 mM |
|---|---|---|---|---|---|
| remove | |||||
| 1,401,235 | + | rseB | SO1344 | 0.84 | -1.1 |
| 1,401,278 | + | rseB | SO1344 | 0.88 | -0.5 |
| 1,401,935 | + | -0.2 | |||
| 1,401,994 | + | -0.7 | |||
| 1,402,134 | - | -3.3 | |||
| 1,402,382 | + | lepA | SO1346 | 0.19 | +0.5 |
| 1,402,502 | + | lepA | SO1346 | 0.26 | -2.2 |
| 1,402,711 | - | lepA | SO1346 | 0.38 | -2.3 |
| 1,402,912 | + | lepA | SO1346 | 0.49 | -2.4 |
| 1,403,034 | + | lepA | SO1346 | 0.56 | -2.3 |
| 1,403,034 | + | lepA | SO1346 | 0.56 | -1.7 |
| 1,403,067 | + | lepA | SO1346 | 0.57 | -2.6 |
| 1,403,628 | + | lepA | SO1346 | 0.89 | -2.5 |
| 1,403,693 | + | +0.2 | |||
| 1,403,693 | + | -1.2 | |||
| 1,403,878 | + | -0.5 | |||
| 1,404,156 | + | lepB | SO1347 | 0.16 | -0.7 |
| 1,404,445 | + | lepB | SO1347 | 0.48 | -0.8 |
| 1,404,467 | + | lepB | SO1347 | 0.50 | -0.5 |
| 1,404,559 | + | lepB | SO1347 | 0.60 | -0.3 |
| 1,404,608 | + | lepB | SO1347 | 0.65 | -0.5 |
| 1,404,764 | + | lepB | SO1347 | 0.82 | -0.0 |
Or see this region's nucleotide sequence