Strain Fitness in Shewanella oneidensis MR-1 around SO1155

Experiment: Aluminum chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1154 and tRNA-Trp-1 are separated by 577 nucleotidestRNA-Trp-1 and SO1155 are separated by 102 nucleotidesSO1155 and SO1156 are separated by 85 nucleotides SO1154: SO1154 - hypothetical protein (NCBI ptt file), at 1,197,019 to 1,198,011 SO1154 SO_t013: tRNA-Trp-1 - tRNA-Trp (RefSeq), at 1,198,589 to 1,198,665 tRNA-Trp-1 SO1155: SO1155 - hypothetical protein (NCBI ptt file), at 1,198,768 to 1,199,118 SO1155 SO1156: SO1156 - TonB-dependent receptor (NCBI ptt file), at 1,199,204 to 1,201,351 SO1156 Position (kb) 1198 1199 1200Strain fitness (log2 ratio) -1 0 1 2at 1197.789 kb on - strand, within SO1154at 1197.943 kb on - strandat 1198.319 kb on + strandat 1198.326 kb on - strandat 1198.334 kb on - strandat 1198.412 kb on - strandat 1198.916 kb on + strand, within SO1155at 1198.924 kb on - strand, within SO1155at 1198.952 kb on - strand, within SO1155at 1199.107 kb on + strandat 1199.160 kb on + strandat 1199.168 kb on - strandat 1199.242 kb on - strandat 1199.242 kb on - strandat 1199.446 kb on - strand, within SO1156at 1199.578 kb on + strand, within SO1156at 1199.648 kb on + strand, within SO1156at 1199.680 kb on + strand, within SO1156at 1199.688 kb on - strand, within SO1156at 1199.815 kb on - strand, within SO1156at 1199.984 kb on - strand, within SO1156at 1199.998 kb on + strand, within SO1156at 1200.080 kb on + strand, within SO1156at 1200.094 kb on + strand, within SO1156

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Per-strain Table

Position Strand Gene LocusTag Fraction Aluminum chloride 1 mM
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1,197,789 - SO1154 0.78 +0.5
1,197,943 - +0.3
1,198,319 + +0.7
1,198,326 - +1.1
1,198,334 - -0.1
1,198,412 - +0.3
1,198,916 + SO1155 0.42 -0.2
1,198,924 - SO1155 0.44 -0.2
1,198,952 - SO1155 0.52 +0.2
1,199,107 + -0.4
1,199,160 + -0.1
1,199,168 - +1.9
1,199,242 - -0.3
1,199,242 - +0.4
1,199,446 - SO1156 0.11 -0.1
1,199,578 + SO1156 0.17 -0.5
1,199,648 + SO1156 0.21 +0.2
1,199,680 + SO1156 0.22 +0.5
1,199,688 - SO1156 0.23 -0.1
1,199,815 - SO1156 0.28 +0.1
1,199,984 - SO1156 0.36 -0.2
1,199,998 + SO1156 0.37 +0.1
1,200,080 + SO1156 0.41 -0.5
1,200,094 + SO1156 0.41 -0.1

Or see this region's nucleotide sequence