Experiment: Aluminum chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0937 and SO0938 are separated by 66 nucleotides SO0938 and SO0939 are separated by 7 nucleotides SO0939 and SO0940 are separated by 441 nucleotides
SO0937: SO0937 - hypothetical protein (NCBI ptt file), at 968,818 to 969,357
SO0937
SO0938: SO0938 - hypothetical protein (NCBI ptt file), at 969,424 to 969,951
SO0938
SO0939: SO0939 - cytochrome c, putative (NCBI ptt file), at 969,959 to 970,783
SO0939
SO0940: SO0940 - transcriptional regulator-related protein (NCBI ptt file), at 971,225 to 971,968
SO0940
Position (kb) 969
970
971 Strain fitness (log2 ratio) -1
0
1 at 969.079 kb on - strand, within SO0937 at 969.079 kb on - strand, within SO0937 at 969.129 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.307 kb on - strand at 969.361 kb on + strand at 969.369 kb on - strand at 969.424 kb on + strand at 969.430 kb on - strand at 969.449 kb on - strand at 969.481 kb on - strand, within SO0938 at 969.521 kb on + strand, within SO0938 at 969.529 kb on - strand, within SO0938 at 969.578 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.595 kb on + strand, within SO0938 at 969.602 kb on + strand, within SO0938 at 969.603 kb on - strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.797 kb on + strand, within SO0938 at 969.878 kb on + strand, within SO0938 at 969.878 kb on + strand, within SO0938 at 969.921 kb on + strand at 969.929 kb on - strand at 969.940 kb on - strand at 969.987 kb on - strand at 970.122 kb on + strand, within SO0939 at 970.124 kb on + strand, within SO0939 at 970.130 kb on - strand, within SO0939 at 970.209 kb on + strand, within SO0939 at 970.209 kb on - strand, within SO0939 at 970.210 kb on + strand, within SO0939 at 970.218 kb on - strand, within SO0939 at 970.268 kb on + strand, within SO0939 at 970.331 kb on + strand, within SO0939 at 970.429 kb on + strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.483 kb on - strand, within SO0939 at 970.500 kb on - strand, within SO0939 at 970.557 kb on + strand, within SO0939 at 970.580 kb on + strand, within SO0939 at 970.634 kb on - strand, within SO0939 at 970.685 kb on - strand, within SO0939 at 970.687 kb on + strand, within SO0939 at 970.751 kb on + strand at 970.751 kb on + strand at 970.759 kb on - strand at 970.768 kb on + strand at 970.983 kb on - strand at 970.983 kb on - strand at 971.105 kb on + strand at 971.105 kb on + strand at 971.114 kb on - strand at 971.141 kb on + strand at 971.184 kb on - strand at 971.312 kb on + strand, within SO0940 at 971.312 kb on + strand, within SO0940 at 971.320 kb on - strand, within SO0940 at 971.371 kb on + strand, within SO0940 at 971.421 kb on + strand, within SO0940 at 971.543 kb on - strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.576 kb on - strand, within SO0940 at 971.682 kb on + strand, within SO0940 at 971.700 kb on - strand, within SO0940 at 971.728 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.779 kb on - strand, within SO0940 at 971.780 kb on - strand, within SO0940
Per-strain Table
Position Strand Gene LocusTag Fraction Aluminum chloride 1 mM remove 969,079 - SO0937 0.48 -0.0 969,079 - SO0937 0.48 +0.8 969,129 + SO0937 0.58 +0.5 969,299 + SO0937 0.89 -0.2 969,299 + SO0937 0.89 -0.5 969,307 - -0.5 969,361 + +0.1 969,369 - -0.2 969,424 + +0.7 969,430 - -0.4 969,449 - -0.2 969,481 - SO0938 0.11 +0.4 969,521 + SO0938 0.18 -0.2 969,529 - SO0938 0.20 +0.6 969,578 + SO0938 0.29 +0.1 969,585 + SO0938 0.30 +0.1 969,585 + SO0938 0.30 +0.5 969,595 + SO0938 0.32 -0.4 969,602 + SO0938 0.34 +0.0 969,603 - SO0938 0.34 +0.4 969,643 + SO0938 0.41 +0.4 969,643 + SO0938 0.41 -0.1 969,797 + SO0938 0.71 +0.3 969,878 + SO0938 0.86 -0.0 969,878 + SO0938 0.86 -0.2 969,921 + +0.2 969,929 - -0.5 969,940 - +0.3 969,987 - +0.8 970,122 + SO0939 0.20 +0.1 970,124 + SO0939 0.20 -0.4 970,130 - SO0939 0.21 +0.6 970,209 + SO0939 0.30 -0.6 970,209 - SO0939 0.30 +0.3 970,210 + SO0939 0.30 -1.1 970,218 - SO0939 0.31 -0.3 970,268 + SO0939 0.37 -0.1 970,331 + SO0939 0.45 +0.7 970,429 + SO0939 0.57 -0.3 970,436 - SO0939 0.58 -0.6 970,436 - SO0939 0.58 -0.0 970,483 - SO0939 0.64 -0.3 970,500 - SO0939 0.66 +0.2 970,557 + SO0939 0.72 +0.2 970,580 + SO0939 0.75 -0.1 970,634 - SO0939 0.82 -0.4 970,685 - SO0939 0.88 -0.3 970,687 + SO0939 0.88 +0.0 970,751 + +0.4 970,751 + +0.3 970,759 - -0.1 970,768 + -0.1 970,983 - +0.6 970,983 - +0.1 971,105 + +0.4 971,105 + -0.6 971,114 - -0.2 971,141 + +0.0 971,184 - -0.0 971,312 + SO0940 0.12 +0.3 971,312 + SO0940 0.12 +0.3 971,320 - SO0940 0.13 -0.3 971,371 + SO0940 0.20 -0.7 971,421 + SO0940 0.26 +0.3 971,543 - SO0940 0.43 +0.1 971,557 + SO0940 0.45 +0.3 971,557 + SO0940 0.45 +0.6 971,576 - SO0940 0.47 -0.1 971,682 + SO0940 0.61 -0.4 971,700 - SO0940 0.64 -0.1 971,728 + SO0940 0.68 +0.2 971,760 + SO0940 0.72 -0.0 971,760 + SO0940 0.72 +0.3 971,768 - SO0940 0.73 +0.5 971,768 - SO0940 0.73 -0.5 971,772 + SO0940 0.74 -0.0 971,772 + SO0940 0.74 -0.4 971,779 - SO0940 0.74 -0.2 971,780 - SO0940 0.75 -0.2
Or see this region's nucleotide sequence