Strain Fitness in Marinobacter adhaerens HP15 around HP15_4014

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4012 and HP15_4013 are separated by 70 nucleotidesHP15_4013 and HP15_4014 are separated by 93 nucleotidesHP15_4014 and HP15_4015 overlap by 7 nucleotidesHP15_4015 and HP15_4016 are separated by 16 nucleotides HP15_4012: HP15_4012 - conserved hypothetical protein, at 4,246,875 to 4,247,132 _4012 HP15_4013: HP15_4013 - DTW domain containing protein, at 4,247,203 to 4,247,709 _4013 HP15_4014: HP15_4014 - FAD dependent oxidoreductase, at 4,247,803 to 4,249,461 _4014 HP15_4015: HP15_4015 - conserved hypothetical protein, at 4,249,455 to 4,249,961 _4015 HP15_4016: HP15_4016 - deoxyribodipyrimidine photolyase, at 4,249,978 to 4,251,300 _4016 Position (kb) 4247 4248 4249 4250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4246.830 kb on + strandat 4246.836 kb on - strandat 4246.911 kb on + strand, within HP15_4012at 4246.911 kb on + strand, within HP15_4012at 4246.919 kb on - strand, within HP15_4012at 4246.919 kb on - strand, within HP15_4012at 4246.919 kb on - strand, within HP15_4012at 4246.926 kb on - strand, within HP15_4012at 4246.926 kb on - strand, within HP15_4012at 4246.983 kb on - strand, within HP15_4012at 4247.036 kb on + strand, within HP15_4012at 4247.044 kb on - strand, within HP15_4012at 4247.066 kb on - strand, within HP15_4012at 4247.114 kb on + strandat 4247.136 kb on - strandat 4247.221 kb on - strandat 4247.251 kb on + strandat 4247.295 kb on + strand, within HP15_4013at 4247.295 kb on + strand, within HP15_4013at 4247.344 kb on - strand, within HP15_4013at 4247.375 kb on + strand, within HP15_4013at 4247.505 kb on + strand, within HP15_4013at 4247.531 kb on - strand, within HP15_4013at 4247.590 kb on - strand, within HP15_4013at 4247.623 kb on - strand, within HP15_4013at 4247.660 kb on + strandat 4247.853 kb on - strandat 4247.869 kb on - strandat 4247.897 kb on + strandat 4247.905 kb on - strandat 4247.931 kb on + strandat 4247.933 kb on - strandat 4247.939 kb on - strandat 4247.974 kb on + strand, within HP15_4014at 4247.996 kb on + strand, within HP15_4014at 4247.996 kb on - strand, within HP15_4014at 4248.028 kb on - strand, within HP15_4014at 4248.043 kb on - strand, within HP15_4014at 4248.045 kb on + strand, within HP15_4014at 4248.045 kb on + strand, within HP15_4014at 4248.053 kb on - strand, within HP15_4014at 4248.072 kb on - strand, within HP15_4014at 4248.132 kb on + strand, within HP15_4014at 4248.328 kb on + strand, within HP15_4014at 4248.328 kb on + strand, within HP15_4014at 4248.387 kb on + strand, within HP15_4014at 4248.444 kb on - strand, within HP15_4014at 4248.544 kb on + strand, within HP15_4014at 4248.607 kb on - strand, within HP15_4014at 4248.707 kb on + strand, within HP15_4014at 4248.707 kb on + strand, within HP15_4014at 4248.707 kb on + strand, within HP15_4014at 4248.727 kb on - strand, within HP15_4014at 4248.761 kb on - strand, within HP15_4014at 4248.768 kb on + strand, within HP15_4014at 4248.849 kb on + strand, within HP15_4014at 4248.889 kb on + strand, within HP15_4014at 4248.909 kb on - strand, within HP15_4014at 4248.952 kb on - strand, within HP15_4014at 4248.989 kb on - strand, within HP15_4014at 4248.989 kb on - strand, within HP15_4014at 4249.022 kb on + strand, within HP15_4014at 4249.029 kb on + strand, within HP15_4014at 4249.186 kb on - strand, within HP15_4014at 4249.259 kb on + strand, within HP15_4014at 4249.259 kb on + strand, within HP15_4014at 4249.267 kb on - strand, within HP15_4014at 4249.319 kb on - strandat 4249.326 kb on - strandat 4249.438 kb on + strandat 4249.489 kb on + strandat 4249.489 kb on + strandat 4249.497 kb on - strandat 4249.514 kb on - strand, within HP15_4015at 4249.515 kb on - strand, within HP15_4015at 4249.539 kb on - strand, within HP15_4015at 4249.554 kb on - strand, within HP15_4015at 4249.556 kb on - strand, within HP15_4015at 4249.623 kb on + strand, within HP15_4015at 4249.691 kb on + strand, within HP15_4015at 4249.729 kb on - strand, within HP15_4015at 4249.756 kb on - strand, within HP15_4015at 4249.772 kb on + strand, within HP15_4015at 4249.780 kb on - strand, within HP15_4015at 4249.908 kb on + strand, within HP15_4015at 4250.008 kb on + strandat 4250.008 kb on + strandat 4250.016 kb on - strandat 4250.016 kb on - strandat 4250.016 kb on - strandat 4250.016 kb on - strandat 4250.016 kb on - strandat 4250.016 kb on - strandat 4250.016 kb on - strandat 4250.070 kb on - strandat 4250.111 kb on + strand, within HP15_4016at 4250.119 kb on - strand, within HP15_4016at 4250.338 kb on - strand, within HP15_4016at 4250.427 kb on + strand, within HP15_4016at 4250.435 kb on - strand, within HP15_4016

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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4,246,830 + +0.6
4,246,836 - +0.2
4,246,911 + HP15_4012 0.14 +0.2
4,246,911 + HP15_4012 0.14 +0.7
4,246,919 - HP15_4012 0.17 -0.1
4,246,919 - HP15_4012 0.17 +0.1
4,246,919 - HP15_4012 0.17 +0.0
4,246,926 - HP15_4012 0.20 -0.1
4,246,926 - HP15_4012 0.20 -0.1
4,246,983 - HP15_4012 0.42 -1.8
4,247,036 + HP15_4012 0.62 +0.5
4,247,044 - HP15_4012 0.66 -0.7
4,247,066 - HP15_4012 0.74 +1.0
4,247,114 + -0.1
4,247,136 - -3.3
4,247,221 - -0.4
4,247,251 + +0.9
4,247,295 + HP15_4013 0.18 -0.0
4,247,295 + HP15_4013 0.18 +0.0
4,247,344 - HP15_4013 0.28 -2.3
4,247,375 + HP15_4013 0.34 +0.7
4,247,505 + HP15_4013 0.60 +1.2
4,247,531 - HP15_4013 0.65 -0.7
4,247,590 - HP15_4013 0.76 +0.8
4,247,623 - HP15_4013 0.83 -0.0
4,247,660 + +0.8
4,247,853 - +0.3
4,247,869 - +0.1
4,247,897 + +0.6
4,247,905 - -0.1
4,247,931 + +0.2
4,247,933 - +0.4
4,247,939 - -2.2
4,247,974 + HP15_4014 0.10 +0.1
4,247,996 + HP15_4014 0.12 +0.6
4,247,996 - HP15_4014 0.12 +0.4
4,248,028 - HP15_4014 0.14 -0.5
4,248,043 - HP15_4014 0.14 +0.0
4,248,045 + HP15_4014 0.15 +0.5
4,248,045 + HP15_4014 0.15 +0.3
4,248,053 - HP15_4014 0.15 -0.5
4,248,072 - HP15_4014 0.16 -0.1
4,248,132 + HP15_4014 0.20 -0.9
4,248,328 + HP15_4014 0.32 -1.9
4,248,328 + HP15_4014 0.32 -0.9
4,248,387 + HP15_4014 0.35 -3.1
4,248,444 - HP15_4014 0.39 -0.2
4,248,544 + HP15_4014 0.45 +0.3
4,248,607 - HP15_4014 0.48 -0.2
4,248,707 + HP15_4014 0.54 +0.1
4,248,707 + HP15_4014 0.54 +0.6
4,248,707 + HP15_4014 0.54 -2.8
4,248,727 - HP15_4014 0.56 +0.1
4,248,761 - HP15_4014 0.58 +1.2
4,248,768 + HP15_4014 0.58 +0.6
4,248,849 + HP15_4014 0.63 +0.5
4,248,889 + HP15_4014 0.65 -0.4
4,248,909 - HP15_4014 0.67 +0.3
4,248,952 - HP15_4014 0.69 +1.6
4,248,989 - HP15_4014 0.71 +0.2
4,248,989 - HP15_4014 0.71 -0.1
4,249,022 + HP15_4014 0.73 -0.1
4,249,029 + HP15_4014 0.74 +0.2
4,249,186 - HP15_4014 0.83 -0.1
4,249,259 + HP15_4014 0.88 -0.5
4,249,259 + HP15_4014 0.88 -2.3
4,249,267 - HP15_4014 0.88 +0.0
4,249,319 - +0.9
4,249,326 - +0.6
4,249,438 + +0.1
4,249,489 + +1.2
4,249,489 + -0.7
4,249,497 - -1.3
4,249,514 - HP15_4015 0.12 +0.3
4,249,515 - HP15_4015 0.12 +0.3
4,249,539 - HP15_4015 0.17 +1.0
4,249,554 - HP15_4015 0.20 -0.5
4,249,556 - HP15_4015 0.20 +1.0
4,249,623 + HP15_4015 0.33 -1.9
4,249,691 + HP15_4015 0.47 -1.4
4,249,729 - HP15_4015 0.54 +0.3
4,249,756 - HP15_4015 0.59 -1.8
4,249,772 + HP15_4015 0.63 +0.1
4,249,780 - HP15_4015 0.64 +0.2
4,249,908 + HP15_4015 0.89 -0.2
4,250,008 + +0.9
4,250,008 + -1.7
4,250,016 - -0.1
4,250,016 - -0.0
4,250,016 - +1.0
4,250,016 - +1.0
4,250,016 - -0.1
4,250,016 - -0.4
4,250,016 - +0.3
4,250,070 - -0.6
4,250,111 + HP15_4016 0.10 -0.3
4,250,119 - HP15_4016 0.11 +0.3
4,250,338 - HP15_4016 0.27 +0.4
4,250,427 + HP15_4016 0.34 -1.7
4,250,435 - HP15_4016 0.35 +1.9

Or see this region's nucleotide sequence