Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3999 and HP15_4000 are separated by 10 nucleotides HP15_4000 and HP15_4001 are separated by 119 nucleotides HP15_4001 and HP15_4002 are separated by 153 nucleotides
HP15_3999: HP15_3999 - AcrB/AcrD/AcrF family protein, at 4,229,700 to 4,232,930
_3999
HP15_4000: HP15_4000 - GGDEF domain membrane protein, at 4,232,941 to 4,233,996
_4000
HP15_4001: HP15_4001 - ion transport 2 domain protein, at 4,234,116 to 4,234,565
_4001
HP15_4002: HP15_4002 - efflux transporter, RND family, MFP subunit, at 4,234,719 to 4,235,957
_4002
Position (kb)
4232
4233
4234 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4231.945 kb on + strand, within HP15_3999 at 4231.965 kb on - strand, within HP15_3999 at 4231.974 kb on + strand, within HP15_3999 at 4231.983 kb on + strand at 4231.996 kb on + strand, within HP15_3999 at 4232.002 kb on + strand, within HP15_3999 at 4232.016 kb on - strand, within HP15_3999 at 4232.054 kb on - strand, within HP15_3999 at 4232.063 kb on + strand, within HP15_3999 at 4232.108 kb on - strand, within HP15_3999 at 4232.387 kb on - strand, within HP15_3999 at 4232.410 kb on - strand, within HP15_3999 at 4232.416 kb on - strand, within HP15_3999 at 4232.516 kb on - strand, within HP15_3999 at 4232.643 kb on + strand at 4232.695 kb on + strand at 4232.738 kb on - strand at 4232.750 kb on + strand at 4232.753 kb on - strand at 4232.784 kb on + strand at 4233.024 kb on - strand at 4233.048 kb on + strand, within HP15_4000 at 4233.058 kb on + strand, within HP15_4000 at 4233.067 kb on + strand, within HP15_4000 at 4233.075 kb on - strand, within HP15_4000 at 4233.289 kb on + strand, within HP15_4000 at 4233.322 kb on - strand, within HP15_4000 at 4233.322 kb on - strand, within HP15_4000 at 4233.527 kb on + strand, within HP15_4000 at 4233.562 kb on - strand, within HP15_4000 at 4233.666 kb on - strand, within HP15_4000 at 4233.716 kb on + strand, within HP15_4000 at 4233.934 kb on + strand at 4234.017 kb on - strand at 4234.287 kb on + strand, within HP15_4001 at 4234.287 kb on + strand, within HP15_4001 at 4234.297 kb on - strand, within HP15_4001 at 4234.368 kb on + strand, within HP15_4001 at 4234.574 kb on - strand at 4234.622 kb on + strand at 4234.630 kb on - strand at 4234.666 kb on - strand at 4234.811 kb on - strand at 4234.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 4,231,945 + HP15_3999 0.69 +0.3 4,231,965 - HP15_3999 0.70 -0.4 4,231,974 + HP15_3999 0.70 +0.6 4,231,983 + +1.5 4,231,996 + HP15_3999 0.71 +0.2 4,232,002 + HP15_3999 0.71 +0.9 4,232,016 - HP15_3999 0.72 +1.0 4,232,054 - HP15_3999 0.73 -2.3 4,232,063 + HP15_3999 0.73 +1.5 4,232,108 - HP15_3999 0.75 +1.3 4,232,387 - HP15_3999 0.83 +0.5 4,232,410 - HP15_3999 0.84 -0.0 4,232,416 - HP15_3999 0.84 +1.1 4,232,516 - HP15_3999 0.87 +0.1 4,232,643 + +1.4 4,232,695 + +1.5 4,232,738 - -0.3 4,232,750 + +1.2 4,232,753 - -0.1 4,232,784 + -0.4 4,233,024 - -0.1 4,233,048 + HP15_4000 0.10 +1.2 4,233,058 + HP15_4000 0.11 +2.0 4,233,067 + HP15_4000 0.12 -0.3 4,233,075 - HP15_4000 0.13 -0.2 4,233,289 + HP15_4000 0.33 +1.8 4,233,322 - HP15_4000 0.36 -0.1 4,233,322 - HP15_4000 0.36 -0.5 4,233,527 + HP15_4000 0.55 +2.1 4,233,562 - HP15_4000 0.59 +0.6 4,233,666 - HP15_4000 0.69 -0.4 4,233,716 + HP15_4000 0.73 +1.4 4,233,934 + +1.3 4,234,017 - -4.2 4,234,287 + HP15_4001 0.38 +1.3 4,234,287 + HP15_4001 0.38 +1.2 4,234,297 - HP15_4001 0.40 +0.2 4,234,368 + HP15_4001 0.56 +1.0 4,234,574 - +0.0 4,234,622 + +0.3 4,234,630 - +3.5 4,234,666 - +1.8 4,234,811 - +0.1 4,234,834 - -0.6
Or see this region's nucleotide sequence