Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3978 and HP15_3979 are separated by 81 nucleotides HP15_3979 and HP15_3980 are separated by 11 nucleotides HP15_3980 and HP15_3981 are separated by 168 nucleotides HP15_3981 and HP15_3982 overlap by 4 nucleotides
HP15_3978: HP15_3978 - sulfate permease, at 4,208,379 to 4,210,112
_3978
HP15_3979: HP15_3979 - membrane protein, at 4,210,194 to 4,210,853
_3979
HP15_3980: HP15_3980 - diguanylate cyclase/phosphodiesterase, at 4,210,865 to 4,212,996
_3980
HP15_3981: HP15_3981 - two component transcriptional regulator, Fis family, at 4,213,165 to 4,213,695
_3981
HP15_3982: HP15_3982 - sensor signal transduction histidine kinase-like protein, at 4,213,692 to 4,214,963
_3982
Position (kb)
4210
4211
4212
4213 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4209.936 kb on - strand, within HP15_3978 at 4210.139 kb on - strand at 4210.287 kb on - strand, within HP15_3979 at 4210.330 kb on - strand, within HP15_3979 at 4210.367 kb on + strand, within HP15_3979 at 4210.428 kb on - strand, within HP15_3979 at 4210.508 kb on + strand, within HP15_3979 at 4210.671 kb on + strand, within HP15_3979 at 4210.901 kb on - strand at 4210.950 kb on - strand at 4210.952 kb on + strand at 4210.989 kb on + strand at 4211.014 kb on + strand at 4211.038 kb on + strand at 4211.055 kb on + strand at 4211.055 kb on + strand at 4211.083 kb on - strand, within HP15_3980 at 4211.194 kb on + strand, within HP15_3980 at 4211.194 kb on + strand, within HP15_3980 at 4211.367 kb on + strand, within HP15_3980 at 4211.417 kb on - strand, within HP15_3980 at 4211.417 kb on - strand, within HP15_3980 at 4211.475 kb on - strand, within HP15_3980 at 4211.577 kb on - strand, within HP15_3980 at 4211.632 kb on - strand, within HP15_3980 at 4211.712 kb on + strand, within HP15_3980 at 4211.767 kb on + strand, within HP15_3980 at 4211.767 kb on + strand, within HP15_3980 at 4211.767 kb on + strand, within HP15_3980 at 4211.776 kb on - strand, within HP15_3980 at 4211.841 kb on + strand, within HP15_3980 at 4211.997 kb on + strand, within HP15_3980 at 4212.005 kb on - strand, within HP15_3980 at 4212.237 kb on - strand, within HP15_3980 at 4212.237 kb on - strand, within HP15_3980 at 4212.266 kb on + strand, within HP15_3980 at 4212.274 kb on - strand, within HP15_3980 at 4212.274 kb on - strand, within HP15_3980 at 4212.634 kb on + strand, within HP15_3980 at 4212.639 kb on + strand, within HP15_3980 at 4212.646 kb on + strand, within HP15_3980 at 4212.651 kb on + strand, within HP15_3980 at 4212.651 kb on + strand, within HP15_3980 at 4212.659 kb on - strand, within HP15_3980 at 4212.659 kb on - strand, within HP15_3980 at 4212.659 kb on - strand, within HP15_3980 at 4212.659 kb on - strand, within HP15_3980 at 4212.659 kb on - strand, within HP15_3980 at 4212.686 kb on + strand, within HP15_3980 at 4212.686 kb on + strand, within HP15_3980 at 4212.686 kb on + strand, within HP15_3980 at 4212.686 kb on + strand, within HP15_3980 at 4212.686 kb on + strand, within HP15_3980 at 4212.694 kb on - strand, within HP15_3980 at 4212.694 kb on - strand, within HP15_3980 at 4212.709 kb on - strand, within HP15_3980 at 4212.780 kb on - strand, within HP15_3980 at 4212.890 kb on + strand at 4213.203 kb on + strand at 4213.211 kb on - strand at 4213.211 kb on - strand at 4213.301 kb on + strand, within HP15_3981 at 4213.379 kb on - strand, within HP15_3981 at 4213.518 kb on - strand, within HP15_3981 at 4213.545 kb on + strand, within HP15_3981 at 4213.564 kb on - strand, within HP15_3981 at 4213.660 kb on - strand at 4213.695 kb on + strand at 4213.778 kb on - strand at 4213.859 kb on + strand, within HP15_3982 at 4213.908 kb on + strand, within HP15_3982 at 4213.952 kb on - strand, within HP15_3982
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 4,209,936 - HP15_3978 0.90 +0.4 4,210,139 - +0.2 4,210,287 - HP15_3979 0.14 +0.9 4,210,330 - HP15_3979 0.21 +1.3 4,210,367 + HP15_3979 0.26 +0.4 4,210,428 - HP15_3979 0.35 +1.7 4,210,508 + HP15_3979 0.48 -0.2 4,210,671 + HP15_3979 0.72 +0.1 4,210,901 - +0.6 4,210,950 - -2.6 4,210,952 + -3.0 4,210,989 + -1.5 4,211,014 + +1.0 4,211,038 + +0.1 4,211,055 + +0.0 4,211,055 + +0.4 4,211,083 - HP15_3980 0.10 -1.9 4,211,194 + HP15_3980 0.15 -0.1 4,211,194 + HP15_3980 0.15 -0.5 4,211,367 + HP15_3980 0.24 -1.5 4,211,417 - HP15_3980 0.26 -2.8 4,211,417 - HP15_3980 0.26 -3.3 4,211,475 - HP15_3980 0.29 +0.4 4,211,577 - HP15_3980 0.33 -0.0 4,211,632 - HP15_3980 0.36 -0.6 4,211,712 + HP15_3980 0.40 -0.1 4,211,767 + HP15_3980 0.42 -0.7 4,211,767 + HP15_3980 0.42 -0.6 4,211,767 + HP15_3980 0.42 -0.0 4,211,776 - HP15_3980 0.43 +0.6 4,211,841 + HP15_3980 0.46 -0.0 4,211,997 + HP15_3980 0.53 -0.5 4,212,005 - HP15_3980 0.53 +0.4 4,212,237 - HP15_3980 0.64 -0.2 4,212,237 - HP15_3980 0.64 +0.1 4,212,266 + HP15_3980 0.66 +0.9 4,212,274 - HP15_3980 0.66 -0.0 4,212,274 - HP15_3980 0.66 +0.1 4,212,634 + HP15_3980 0.83 -1.4 4,212,639 + HP15_3980 0.83 -0.7 4,212,646 + HP15_3980 0.84 -0.2 4,212,651 + HP15_3980 0.84 -0.2 4,212,651 + HP15_3980 0.84 -0.2 4,212,659 - HP15_3980 0.84 -0.8 4,212,659 - HP15_3980 0.84 +0.5 4,212,659 - HP15_3980 0.84 -0.7 4,212,659 - HP15_3980 0.84 -0.4 4,212,659 - HP15_3980 0.84 +0.4 4,212,686 + HP15_3980 0.85 +1.4 4,212,686 + HP15_3980 0.85 +0.7 4,212,686 + HP15_3980 0.85 -0.4 4,212,686 + HP15_3980 0.85 -2.4 4,212,686 + HP15_3980 0.85 -0.4 4,212,694 - HP15_3980 0.86 +0.5 4,212,694 - HP15_3980 0.86 -0.2 4,212,709 - HP15_3980 0.86 +1.1 4,212,780 - HP15_3980 0.90 -1.4 4,212,890 + +1.5 4,213,203 + +0.2 4,213,211 - +1.2 4,213,211 - +0.1 4,213,301 + HP15_3981 0.26 -0.8 4,213,379 - HP15_3981 0.40 -1.6 4,213,518 - HP15_3981 0.66 +1.1 4,213,545 + HP15_3981 0.72 +0.3 4,213,564 - HP15_3981 0.75 -0.9 4,213,660 - +0.1 4,213,695 + -2.6 4,213,778 - -1.2 4,213,859 + HP15_3982 0.13 +0.6 4,213,908 + HP15_3982 0.17 +0.7 4,213,952 - HP15_3982 0.20 +0.2
Or see this region's nucleotide sequence