Strain Fitness in Marinobacter adhaerens HP15 around HP15_3980

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3978 and HP15_3979 are separated by 81 nucleotidesHP15_3979 and HP15_3980 are separated by 11 nucleotidesHP15_3980 and HP15_3981 are separated by 168 nucleotidesHP15_3981 and HP15_3982 overlap by 4 nucleotides HP15_3978: HP15_3978 - sulfate permease, at 4,208,379 to 4,210,112 _3978 HP15_3979: HP15_3979 - membrane protein, at 4,210,194 to 4,210,853 _3979 HP15_3980: HP15_3980 - diguanylate cyclase/phosphodiesterase, at 4,210,865 to 4,212,996 _3980 HP15_3981: HP15_3981 - two component transcriptional regulator, Fis family, at 4,213,165 to 4,213,695 _3981 HP15_3982: HP15_3982 - sensor signal transduction histidine kinase-like protein, at 4,213,692 to 4,214,963 _3982 Position (kb) 4210 4211 4212 4213Strain fitness (log2 ratio) -3 -2 -1 0 1at 4209.936 kb on - strand, within HP15_3978at 4210.139 kb on - strandat 4210.287 kb on - strand, within HP15_3979at 4210.330 kb on - strand, within HP15_3979at 4210.367 kb on + strand, within HP15_3979at 4210.428 kb on - strand, within HP15_3979at 4210.508 kb on + strand, within HP15_3979at 4210.671 kb on + strand, within HP15_3979at 4210.901 kb on - strandat 4210.950 kb on - strandat 4210.952 kb on + strandat 4210.989 kb on + strandat 4211.014 kb on + strandat 4211.038 kb on + strandat 4211.055 kb on + strandat 4211.055 kb on + strandat 4211.083 kb on - strand, within HP15_3980at 4211.194 kb on + strand, within HP15_3980at 4211.194 kb on + strand, within HP15_3980at 4211.367 kb on + strand, within HP15_3980at 4211.417 kb on - strand, within HP15_3980at 4211.417 kb on - strand, within HP15_3980at 4211.475 kb on - strand, within HP15_3980at 4211.577 kb on - strand, within HP15_3980at 4211.632 kb on - strand, within HP15_3980at 4211.712 kb on + strand, within HP15_3980at 4211.767 kb on + strand, within HP15_3980at 4211.767 kb on + strand, within HP15_3980at 4211.767 kb on + strand, within HP15_3980at 4211.776 kb on - strand, within HP15_3980at 4211.841 kb on + strand, within HP15_3980at 4211.997 kb on + strand, within HP15_3980at 4212.005 kb on - strand, within HP15_3980at 4212.237 kb on - strand, within HP15_3980at 4212.237 kb on - strand, within HP15_3980at 4212.266 kb on + strand, within HP15_3980at 4212.274 kb on - strand, within HP15_3980at 4212.274 kb on - strand, within HP15_3980at 4212.634 kb on + strand, within HP15_3980at 4212.639 kb on + strand, within HP15_3980at 4212.646 kb on + strand, within HP15_3980at 4212.651 kb on + strand, within HP15_3980at 4212.651 kb on + strand, within HP15_3980at 4212.659 kb on - strand, within HP15_3980at 4212.659 kb on - strand, within HP15_3980at 4212.659 kb on - strand, within HP15_3980at 4212.659 kb on - strand, within HP15_3980at 4212.659 kb on - strand, within HP15_3980at 4212.686 kb on + strand, within HP15_3980at 4212.686 kb on + strand, within HP15_3980at 4212.686 kb on + strand, within HP15_3980at 4212.686 kb on + strand, within HP15_3980at 4212.686 kb on + strand, within HP15_3980at 4212.694 kb on - strand, within HP15_3980at 4212.694 kb on - strand, within HP15_3980at 4212.709 kb on - strand, within HP15_3980at 4212.780 kb on - strand, within HP15_3980at 4212.890 kb on + strandat 4213.203 kb on + strandat 4213.211 kb on - strandat 4213.211 kb on - strandat 4213.301 kb on + strand, within HP15_3981at 4213.379 kb on - strand, within HP15_3981at 4213.518 kb on - strand, within HP15_3981at 4213.545 kb on + strand, within HP15_3981at 4213.564 kb on - strand, within HP15_3981at 4213.660 kb on - strandat 4213.695 kb on + strandat 4213.778 kb on - strandat 4213.859 kb on + strand, within HP15_3982at 4213.908 kb on + strand, within HP15_3982at 4213.952 kb on - strand, within HP15_3982

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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4,209,936 - HP15_3978 0.90 +0.4
4,210,139 - +0.2
4,210,287 - HP15_3979 0.14 +0.9
4,210,330 - HP15_3979 0.21 +1.3
4,210,367 + HP15_3979 0.26 +0.4
4,210,428 - HP15_3979 0.35 +1.7
4,210,508 + HP15_3979 0.48 -0.2
4,210,671 + HP15_3979 0.72 +0.1
4,210,901 - +0.6
4,210,950 - -2.6
4,210,952 + -3.0
4,210,989 + -1.5
4,211,014 + +1.0
4,211,038 + +0.1
4,211,055 + +0.0
4,211,055 + +0.4
4,211,083 - HP15_3980 0.10 -1.9
4,211,194 + HP15_3980 0.15 -0.1
4,211,194 + HP15_3980 0.15 -0.5
4,211,367 + HP15_3980 0.24 -1.5
4,211,417 - HP15_3980 0.26 -2.8
4,211,417 - HP15_3980 0.26 -3.3
4,211,475 - HP15_3980 0.29 +0.4
4,211,577 - HP15_3980 0.33 -0.0
4,211,632 - HP15_3980 0.36 -0.6
4,211,712 + HP15_3980 0.40 -0.1
4,211,767 + HP15_3980 0.42 -0.7
4,211,767 + HP15_3980 0.42 -0.6
4,211,767 + HP15_3980 0.42 -0.0
4,211,776 - HP15_3980 0.43 +0.6
4,211,841 + HP15_3980 0.46 -0.0
4,211,997 + HP15_3980 0.53 -0.5
4,212,005 - HP15_3980 0.53 +0.4
4,212,237 - HP15_3980 0.64 -0.2
4,212,237 - HP15_3980 0.64 +0.1
4,212,266 + HP15_3980 0.66 +0.9
4,212,274 - HP15_3980 0.66 -0.0
4,212,274 - HP15_3980 0.66 +0.1
4,212,634 + HP15_3980 0.83 -1.4
4,212,639 + HP15_3980 0.83 -0.7
4,212,646 + HP15_3980 0.84 -0.2
4,212,651 + HP15_3980 0.84 -0.2
4,212,651 + HP15_3980 0.84 -0.2
4,212,659 - HP15_3980 0.84 -0.8
4,212,659 - HP15_3980 0.84 +0.5
4,212,659 - HP15_3980 0.84 -0.7
4,212,659 - HP15_3980 0.84 -0.4
4,212,659 - HP15_3980 0.84 +0.4
4,212,686 + HP15_3980 0.85 +1.4
4,212,686 + HP15_3980 0.85 +0.7
4,212,686 + HP15_3980 0.85 -0.4
4,212,686 + HP15_3980 0.85 -2.4
4,212,686 + HP15_3980 0.85 -0.4
4,212,694 - HP15_3980 0.86 +0.5
4,212,694 - HP15_3980 0.86 -0.2
4,212,709 - HP15_3980 0.86 +1.1
4,212,780 - HP15_3980 0.90 -1.4
4,212,890 + +1.5
4,213,203 + +0.2
4,213,211 - +1.2
4,213,211 - +0.1
4,213,301 + HP15_3981 0.26 -0.8
4,213,379 - HP15_3981 0.40 -1.6
4,213,518 - HP15_3981 0.66 +1.1
4,213,545 + HP15_3981 0.72 +0.3
4,213,564 - HP15_3981 0.75 -0.9
4,213,660 - +0.1
4,213,695 + -2.6
4,213,778 - -1.2
4,213,859 + HP15_3982 0.13 +0.6
4,213,908 + HP15_3982 0.17 +0.7
4,213,952 - HP15_3982 0.20 +0.2

Or see this region's nucleotide sequence