Strain Fitness in Marinobacter adhaerens HP15 around HP15_3633

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3631 and HP15_3632 are separated by 27 nucleotidesHP15_3632 and HP15_3633 are separated by 8 nucleotidesHP15_3633 and HP15_3635 are separated by 66 nucleotidesHP15_3635 and HP15_3634 are separated by 14 nucleotidesHP15_3634 and HP15_3636 are separated by 18 nucleotides HP15_3631: HP15_3631 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,825,148 to 3,827,748 _3631 HP15_3632: HP15_3632 - multicopper oxidase-like protein, at 3,827,776 to 3,828,459 _3632 HP15_3633: HP15_3633 - protein-S-isoprenylcysteine methyltransferase, at 3,828,468 to 3,828,869 _3633 HP15_3635: HP15_3635 - conserved hypothetical protein, at 3,828,936 to 3,829,709 _3635 HP15_3634: HP15_3634 - hypothetical protein, at 3,829,724 to 3,829,846 _3634 HP15_3636: HP15_3636 - protein containing molybdopterin oxidoreductase / molybdopterin dinucleotide-binding region, at 3,829,865 to 3,831,976 _3636 Position (kb) 3828 3829Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3827.556 kb on + strandat 3827.563 kb on + strandat 3827.565 kb on - strandat 3827.571 kb on - strandat 3827.571 kb on - strandat 3827.583 kb on + strandat 3827.686 kb on + strandat 3827.691 kb on + strandat 3827.694 kb on - strandat 3827.732 kb on + strandat 3827.732 kb on + strandat 3827.732 kb on + strandat 3827.782 kb on - strandat 3827.826 kb on - strandat 3827.925 kb on - strand, within HP15_3632at 3827.932 kb on - strand, within HP15_3632at 3827.934 kb on + strand, within HP15_3632at 3827.939 kb on + strand, within HP15_3632at 3827.947 kb on - strand, within HP15_3632at 3828.026 kb on - strand, within HP15_3632at 3828.128 kb on + strand, within HP15_3632at 3828.128 kb on + strand, within HP15_3632at 3828.128 kb on + strand, within HP15_3632at 3828.136 kb on - strand, within HP15_3632at 3828.136 kb on - strand, within HP15_3632at 3828.315 kb on + strand, within HP15_3632at 3828.315 kb on + strand, within HP15_3632at 3828.344 kb on + strand, within HP15_3632at 3828.424 kb on + strandat 3828.594 kb on - strand, within HP15_3633at 3828.662 kb on + strand, within HP15_3633at 3828.665 kb on - strand, within HP15_3633at 3828.719 kb on + strand, within HP15_3633at 3828.719 kb on + strand, within HP15_3633at 3828.720 kb on + strand, within HP15_3633at 3828.855 kb on + strandat 3828.858 kb on - strandat 3828.875 kb on - strandat 3828.971 kb on - strandat 3828.971 kb on - strandat 3829.186 kb on - strand, within HP15_3635at 3829.205 kb on + strand, within HP15_3635at 3829.253 kb on - strand, within HP15_3635at 3829.294 kb on + strand, within HP15_3635at 3829.294 kb on + strand, within HP15_3635at 3829.302 kb on - strand, within HP15_3635at 3829.302 kb on - strand, within HP15_3635at 3829.321 kb on + strand, within HP15_3635at 3829.329 kb on - strand, within HP15_3635at 3829.372 kb on + strand, within HP15_3635at 3829.415 kb on + strand, within HP15_3635at 3829.454 kb on + strand, within HP15_3635at 3829.492 kb on + strand, within HP15_3635at 3829.492 kb on - strand, within HP15_3635at 3829.545 kb on + strand, within HP15_3635at 3829.550 kb on + strand, within HP15_3635at 3829.563 kb on - strand, within HP15_3635at 3829.563 kb on - strand, within HP15_3635at 3829.565 kb on + strand, within HP15_3635at 3829.831 kb on - strand, within HP15_3634at 3829.833 kb on + strand, within HP15_3634

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,827,556 + -3.4
3,827,563 + +0.2
3,827,565 - -1.7
3,827,571 - +0.1
3,827,571 - -0.4
3,827,583 + -0.0
3,827,686 + +0.4
3,827,691 + +0.5
3,827,694 - +0.2
3,827,732 + +0.9
3,827,732 + +0.9
3,827,732 + +1.2
3,827,782 - -0.0
3,827,826 - +0.0
3,827,925 - HP15_3632 0.22 -0.8
3,827,932 - HP15_3632 0.23 -0.3
3,827,934 + HP15_3632 0.23 -2.5
3,827,939 + HP15_3632 0.24 -0.7
3,827,947 - HP15_3632 0.25 +0.4
3,828,026 - HP15_3632 0.37 +0.3
3,828,128 + HP15_3632 0.51 +0.2
3,828,128 + HP15_3632 0.51 -0.3
3,828,128 + HP15_3632 0.51 +0.2
3,828,136 - HP15_3632 0.53 -0.0
3,828,136 - HP15_3632 0.53 +0.4
3,828,315 + HP15_3632 0.79 -1.7
3,828,315 + HP15_3632 0.79 +0.3
3,828,344 + HP15_3632 0.83 +0.1
3,828,424 + +0.7
3,828,594 - HP15_3633 0.31 +0.3
3,828,662 + HP15_3633 0.48 +0.4
3,828,665 - HP15_3633 0.49 +0.9
3,828,719 + HP15_3633 0.62 +0.3
3,828,719 + HP15_3633 0.62 +2.9
3,828,720 + HP15_3633 0.63 +0.9
3,828,855 + +0.1
3,828,858 - -0.1
3,828,875 - +0.1
3,828,971 - +1.2
3,828,971 - -3.0
3,829,186 - HP15_3635 0.32 -2.1
3,829,205 + HP15_3635 0.35 +0.0
3,829,253 - HP15_3635 0.41 -0.0
3,829,294 + HP15_3635 0.46 -0.6
3,829,294 + HP15_3635 0.46 -0.5
3,829,302 - HP15_3635 0.47 +0.1
3,829,302 - HP15_3635 0.47 -0.3
3,829,321 + HP15_3635 0.50 +0.5
3,829,329 - HP15_3635 0.51 +0.8
3,829,372 + HP15_3635 0.56 +0.4
3,829,415 + HP15_3635 0.62 -2.4
3,829,454 + HP15_3635 0.67 -0.6
3,829,492 + HP15_3635 0.72 +0.1
3,829,492 - HP15_3635 0.72 +0.3
3,829,545 + HP15_3635 0.79 -0.5
3,829,550 + HP15_3635 0.79 +0.4
3,829,563 - HP15_3635 0.81 -0.1
3,829,563 - HP15_3635 0.81 -0.1
3,829,565 + HP15_3635 0.81 +0.1
3,829,831 - HP15_3634 0.87 -3.1
3,829,833 + HP15_3634 0.89 +0.9

Or see this region's nucleotide sequence