Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3605 and HP15_3606 are separated by 235 nucleotides HP15_3606 and HP15_3607 are separated by 184 nucleotides HP15_3607 and HP15_3608 are separated by 320 nucleotides
HP15_3605: HP15_3605 - conserved hypothetical protein, at 3,800,136 to 3,801,955
_3605
HP15_3606: HP15_3606 - abortive infection protein-like protein, at 3,802,191 to 3,802,613
_3606
HP15_3607: HP15_3607 - DEAD/DEAH box helicase domain protein, at 3,802,798 to 3,804,120
_3607
HP15_3608: HP15_3608 - membrane protein containing redoxin domain, at 3,804,441 to 3,805,256
_3608
Position (kb)
3802
3803
3804
3805 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3801.798 kb on - strand at 3801.858 kb on + strand at 3801.909 kb on + strand at 3801.966 kb on - strand at 3801.971 kb on - strand at 3802.085 kb on - strand at 3802.214 kb on - strand at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.262 kb on + strand, within HP15_3606 at 3802.265 kb on - strand, within HP15_3606 at 3802.265 kb on - strand, within HP15_3606 at 3802.392 kb on + strand, within HP15_3606 at 3802.418 kb on - strand, within HP15_3606 at 3802.435 kb on + strand, within HP15_3606 at 3802.443 kb on - strand, within HP15_3606 at 3802.490 kb on + strand, within HP15_3606 at 3802.609 kb on + strand at 3802.617 kb on - strand at 3802.629 kb on + strand at 3802.629 kb on + strand at 3802.637 kb on - strand at 3802.802 kb on - strand at 3802.805 kb on + strand at 3802.833 kb on + strand at 3802.961 kb on + strand, within HP15_3607 at 3802.961 kb on + strand, within HP15_3607 at 3802.964 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.998 kb on + strand, within HP15_3607 at 3802.998 kb on + strand, within HP15_3607 at 3803.006 kb on - strand, within HP15_3607 at 3803.078 kb on + strand, within HP15_3607 at 3803.164 kb on - strand, within HP15_3607 at 3803.164 kb on - strand, within HP15_3607 at 3803.166 kb on + strand, within HP15_3607 at 3803.174 kb on - strand, within HP15_3607 at 3803.242 kb on + strand, within HP15_3607 at 3803.250 kb on - strand, within HP15_3607 at 3803.285 kb on + strand, within HP15_3607 at 3803.293 kb on - strand, within HP15_3607 at 3803.313 kb on - strand, within HP15_3607 at 3803.399 kb on - strand, within HP15_3607 at 3803.432 kb on + strand, within HP15_3607 at 3803.511 kb on + strand, within HP15_3607 at 3803.531 kb on + strand, within HP15_3607 at 3803.665 kb on - strand, within HP15_3607 at 3803.693 kb on - strand, within HP15_3607 at 3803.728 kb on + strand, within HP15_3607 at 3803.757 kb on - strand, within HP15_3607 at 3803.764 kb on - strand, within HP15_3607 at 3803.803 kb on - strand, within HP15_3607 at 3803.805 kb on - strand, within HP15_3607 at 3803.806 kb on - strand, within HP15_3607 at 3803.851 kb on + strand, within HP15_3607 at 3803.851 kb on + strand, within HP15_3607 at 3803.851 kb on + strand, within HP15_3607 at 3803.859 kb on - strand, within HP15_3607 at 3803.859 kb on - strand, within HP15_3607 at 3803.859 kb on - strand, within HP15_3607 at 3803.871 kb on + strand, within HP15_3607 at 3803.891 kb on - strand, within HP15_3607 at 3803.924 kb on + strand, within HP15_3607 at 3803.931 kb on - strand, within HP15_3607 at 3803.947 kb on + strand, within HP15_3607 at 3803.953 kb on + strand, within HP15_3607 at 3803.980 kb on + strand, within HP15_3607 at 3804.001 kb on + strand at 3804.039 kb on + strand at 3804.066 kb on + strand at 3804.074 kb on - strand at 3804.074 kb on - strand at 3804.085 kb on - strand at 3804.085 kb on - strand at 3804.085 kb on - strand at 3804.282 kb on + strand at 3804.282 kb on + strand at 3804.290 kb on - strand at 3804.290 kb on - strand at 3804.308 kb on - strand at 3804.314 kb on - strand at 3804.329 kb on - strand at 3804.329 kb on - strand at 3804.329 kb on - strand at 3804.331 kb on + strand at 3804.459 kb on - strand at 3804.459 kb on - strand at 3804.500 kb on - strand at 3804.689 kb on + strand, within HP15_3608 at 3804.689 kb on + strand, within HP15_3608 at 3804.696 kb on + strand, within HP15_3608 at 3804.697 kb on - strand, within HP15_3608 at 3804.697 kb on - strand, within HP15_3608 at 3804.745 kb on - strand, within HP15_3608 at 3804.791 kb on + strand, within HP15_3608 at 3804.799 kb on - strand, within HP15_3608 at 3804.799 kb on - strand, within HP15_3608 at 3804.799 kb on - strand, within HP15_3608 at 3804.814 kb on + strand, within HP15_3608 at 3804.814 kb on + strand, within HP15_3608 at 3804.814 kb on + strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.822 kb on - strand, within HP15_3608 at 3804.869 kb on + strand, within HP15_3608 at 3804.874 kb on + strand, within HP15_3608 at 3804.882 kb on + strand, within HP15_3608 at 3804.929 kb on + strand, within HP15_3608 at 3804.959 kb on - strand, within HP15_3608 at 3804.992 kb on - strand, within HP15_3608 at 3805.026 kb on - strand, within HP15_3608 at 3805.045 kb on - strand, within HP15_3608
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,801,798 - -3.0 3,801,858 + +1.0 3,801,909 + -0.3 3,801,966 - -0.2 3,801,971 - -0.0 3,802,085 - +0.3 3,802,214 - -0.4 3,802,257 + HP15_3606 0.16 -0.3 3,802,257 + HP15_3606 0.16 -0.3 3,802,257 + HP15_3606 0.16 +0.1 3,802,257 + HP15_3606 0.16 +0.0 3,802,257 + HP15_3606 0.16 +0.1 3,802,257 + HP15_3606 0.16 -1.3 3,802,262 + HP15_3606 0.17 +3.2 3,802,265 - HP15_3606 0.17 +0.1 3,802,265 - HP15_3606 0.17 -0.9 3,802,392 + HP15_3606 0.48 -0.1 3,802,418 - HP15_3606 0.54 +1.9 3,802,435 + HP15_3606 0.58 +0.8 3,802,443 - HP15_3606 0.60 +0.7 3,802,490 + HP15_3606 0.71 +0.3 3,802,609 + -0.2 3,802,617 - -1.7 3,802,629 + +2.3 3,802,629 + -0.0 3,802,637 - +0.4 3,802,802 - +0.1 3,802,805 + +1.0 3,802,833 + +0.9 3,802,961 + HP15_3607 0.12 +0.5 3,802,961 + HP15_3607 0.12 -0.3 3,802,964 - HP15_3607 0.13 +0.9 3,802,969 - HP15_3607 0.13 +0.2 3,802,969 - HP15_3607 0.13 +0.7 3,802,969 - HP15_3607 0.13 -1.1 3,802,998 + HP15_3607 0.15 +0.6 3,802,998 + HP15_3607 0.15 +0.7 3,803,006 - HP15_3607 0.16 +1.2 3,803,078 + HP15_3607 0.21 +1.1 3,803,164 - HP15_3607 0.28 +0.0 3,803,164 - HP15_3607 0.28 +0.4 3,803,166 + HP15_3607 0.28 +1.3 3,803,174 - HP15_3607 0.28 +0.2 3,803,242 + HP15_3607 0.34 -0.2 3,803,250 - HP15_3607 0.34 +1.3 3,803,285 + HP15_3607 0.37 +1.9 3,803,293 - HP15_3607 0.37 +1.1 3,803,313 - HP15_3607 0.39 -0.0 3,803,399 - HP15_3607 0.45 +1.0 3,803,432 + HP15_3607 0.48 +0.3 3,803,511 + HP15_3607 0.54 -0.1 3,803,531 + HP15_3607 0.55 +0.5 3,803,665 - HP15_3607 0.66 -0.5 3,803,693 - HP15_3607 0.68 +0.4 3,803,728 + HP15_3607 0.70 +0.3 3,803,757 - HP15_3607 0.72 -0.4 3,803,764 - HP15_3607 0.73 +0.6 3,803,803 - HP15_3607 0.76 +0.4 3,803,805 - HP15_3607 0.76 +0.3 3,803,806 - HP15_3607 0.76 +0.9 3,803,851 + HP15_3607 0.80 +0.3 3,803,851 + HP15_3607 0.80 -1.2 3,803,851 + HP15_3607 0.80 +1.9 3,803,859 - HP15_3607 0.80 +0.4 3,803,859 - HP15_3607 0.80 +0.6 3,803,859 - HP15_3607 0.80 +1.1 3,803,871 + HP15_3607 0.81 +0.2 3,803,891 - HP15_3607 0.83 +0.3 3,803,924 + HP15_3607 0.85 +0.1 3,803,931 - HP15_3607 0.86 -0.4 3,803,947 + HP15_3607 0.87 +0.2 3,803,953 + HP15_3607 0.87 +0.3 3,803,980 + HP15_3607 0.89 +1.8 3,804,001 + -0.5 3,804,039 + +0.1 3,804,066 + +0.1 3,804,074 - +0.3 3,804,074 - +0.2 3,804,085 - +0.6 3,804,085 - +1.2 3,804,085 - +0.8 3,804,282 + +1.5 3,804,282 + +1.0 3,804,290 - +0.3 3,804,290 - -0.9 3,804,308 - +0.1 3,804,314 - +1.9 3,804,329 - +0.5 3,804,329 - -1.9 3,804,329 - -0.3 3,804,331 + +0.5 3,804,459 - +0.3 3,804,459 - -0.2 3,804,500 - -1.1 3,804,689 + HP15_3608 0.30 +0.5 3,804,689 + HP15_3608 0.30 -0.0 3,804,696 + HP15_3608 0.31 +0.5 3,804,697 - HP15_3608 0.31 +0.8 3,804,697 - HP15_3608 0.31 +0.4 3,804,745 - HP15_3608 0.37 +0.5 3,804,791 + HP15_3608 0.43 +0.1 3,804,799 - HP15_3608 0.44 +0.9 3,804,799 - HP15_3608 0.44 -0.0 3,804,799 - HP15_3608 0.44 +1.7 3,804,814 + HP15_3608 0.46 -0.5 3,804,814 + HP15_3608 0.46 +1.0 3,804,814 + HP15_3608 0.46 +0.4 3,804,822 - HP15_3608 0.47 +0.0 3,804,822 - HP15_3608 0.47 +0.2 3,804,822 - HP15_3608 0.47 -0.2 3,804,822 - HP15_3608 0.47 -0.1 3,804,822 - HP15_3608 0.47 +0.6 3,804,822 - HP15_3608 0.47 -0.2 3,804,869 + HP15_3608 0.52 +0.5 3,804,874 + HP15_3608 0.53 -0.8 3,804,882 + HP15_3608 0.54 -1.4 3,804,929 + HP15_3608 0.60 -0.6 3,804,959 - HP15_3608 0.63 -0.8 3,804,992 - HP15_3608 0.68 +0.1 3,805,026 - HP15_3608 0.72 +0.8 3,805,045 - HP15_3608 0.74 +0.4
Or see this region's nucleotide sequence