Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3466 and HP15_3467 are separated by 80 nucleotides HP15_3467 and HP15_3468 are separated by 10 nucleotides HP15_3468 and HP15_3469 are separated by 3 nucleotides
HP15_3466: HP15_3466 - two component, sigma54 specific, transcriptional regulator, Fis family, at 3,651,756 to 3,653,327
_3466
HP15_3467: HP15_3467 - type VI secretion ATPase, ClpV1 family, at 3,653,408 to 3,656,041
_3467
HP15_3468: HP15_3468 - protein containing Type IV / VI secretion system, DotU domains, at 3,656,052 to 3,656,879
_3468
HP15_3469: HP15_3469 - protein containing DUF876, bacterial, at 3,656,883 to 3,658,217
_3469
Position (kb)
3653
3654
3655
3656
3657 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3652.462 kb on + strand, within HP15_3466 at 3652.470 kb on - strand, within HP15_3466 at 3652.494 kb on - strand, within HP15_3466 at 3652.524 kb on - strand, within HP15_3466 at 3652.584 kb on + strand, within HP15_3466 at 3652.610 kb on + strand, within HP15_3466 at 3652.618 kb on - strand, within HP15_3466 at 3652.682 kb on - strand, within HP15_3466 at 3652.729 kb on + strand, within HP15_3466 at 3652.757 kb on - strand, within HP15_3466 at 3652.842 kb on + strand, within HP15_3466 at 3652.888 kb on + strand, within HP15_3466 at 3652.891 kb on + strand, within HP15_3466 at 3652.929 kb on - strand, within HP15_3466 at 3652.943 kb on + strand, within HP15_3466 at 3652.966 kb on - strand, within HP15_3466 at 3653.099 kb on - strand, within HP15_3466 at 3653.147 kb on + strand, within HP15_3466 at 3653.171 kb on - strand at 3653.174 kb on - strand at 3653.200 kb on + strand at 3653.219 kb on - strand at 3653.256 kb on - strand at 3653.287 kb on + strand at 3653.291 kb on + strand at 3653.389 kb on + strand at 3653.511 kb on + strand at 3653.531 kb on - strand at 3653.598 kb on - strand at 3653.641 kb on + strand at 3653.651 kb on + strand at 3653.821 kb on - strand, within HP15_3467 at 3653.827 kb on + strand, within HP15_3467 at 3653.835 kb on - strand, within HP15_3467 at 3653.835 kb on - strand, within HP15_3467 at 3653.854 kb on - strand, within HP15_3467 at 3653.859 kb on + strand, within HP15_3467 at 3653.881 kb on - strand, within HP15_3467 at 3653.970 kb on + strand, within HP15_3467 at 3654.029 kb on + strand, within HP15_3467 at 3654.037 kb on - strand, within HP15_3467 at 3654.259 kb on - strand, within HP15_3467 at 3654.270 kb on + strand, within HP15_3467 at 3654.271 kb on - strand, within HP15_3467 at 3654.271 kb on - strand, within HP15_3467 at 3654.401 kb on - strand, within HP15_3467 at 3654.427 kb on - strand, within HP15_3467 at 3654.436 kb on + strand, within HP15_3467 at 3654.502 kb on + strand, within HP15_3467 at 3654.502 kb on + strand, within HP15_3467 at 3654.510 kb on - strand, within HP15_3467 at 3654.510 kb on - strand, within HP15_3467 at 3654.563 kb on - strand, within HP15_3467 at 3654.622 kb on - strand, within HP15_3467 at 3654.643 kb on + strand, within HP15_3467 at 3654.679 kb on + strand, within HP15_3467 at 3654.687 kb on - strand, within HP15_3467 at 3654.687 kb on - strand, within HP15_3467 at 3654.749 kb on + strand, within HP15_3467 at 3654.755 kb on - strand, within HP15_3467 at 3654.756 kb on + strand, within HP15_3467 at 3654.941 kb on + strand, within HP15_3467 at 3654.976 kb on + strand, within HP15_3467 at 3655.006 kb on - strand, within HP15_3467 at 3655.006 kb on - strand, within HP15_3467 at 3655.011 kb on - strand, within HP15_3467 at 3655.071 kb on + strand, within HP15_3467 at 3655.081 kb on + strand, within HP15_3467 at 3655.086 kb on + strand, within HP15_3467 at 3655.096 kb on + strand, within HP15_3467 at 3655.272 kb on + strand, within HP15_3467 at 3655.279 kb on + strand, within HP15_3467 at 3655.280 kb on - strand, within HP15_3467 at 3655.322 kb on + strand, within HP15_3467 at 3655.335 kb on - strand, within HP15_3467 at 3655.360 kb on + strand, within HP15_3467 at 3655.460 kb on - strand, within HP15_3467 at 3655.466 kb on + strand, within HP15_3467 at 3655.466 kb on - strand, within HP15_3467 at 3655.479 kb on - strand, within HP15_3467 at 3655.558 kb on + strand, within HP15_3467 at 3655.558 kb on + strand, within HP15_3467 at 3655.558 kb on + strand, within HP15_3467 at 3655.566 kb on - strand, within HP15_3467 at 3655.566 kb on - strand, within HP15_3467 at 3655.792 kb on + strand at 3655.793 kb on - strand at 3655.860 kb on - strand at 3656.112 kb on + strand at 3656.158 kb on + strand, within HP15_3468 at 3656.171 kb on - strand, within HP15_3468 at 3656.328 kb on + strand, within HP15_3468 at 3656.427 kb on + strand, within HP15_3468 at 3656.452 kb on + strand, within HP15_3468 at 3656.463 kb on + strand, within HP15_3468 at 3656.471 kb on - strand, within HP15_3468 at 3656.471 kb on - strand, within HP15_3468 at 3656.485 kb on - strand, within HP15_3468 at 3656.571 kb on - strand, within HP15_3468 at 3656.574 kb on + strand, within HP15_3468 at 3656.648 kb on - strand, within HP15_3468 at 3656.660 kb on + strand, within HP15_3468 at 3656.721 kb on + strand, within HP15_3468 at 3656.775 kb on + strand, within HP15_3468 at 3656.788 kb on - strand, within HP15_3468 at 3656.844 kb on + strand at 3656.865 kb on - strand at 3656.896 kb on + strand at 3657.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,652,462 + HP15_3466 0.45 -0.4 3,652,470 - HP15_3466 0.45 +0.2 3,652,494 - HP15_3466 0.47 -0.3 3,652,524 - HP15_3466 0.49 -0.1 3,652,584 + HP15_3466 0.53 -0.4 3,652,610 + HP15_3466 0.54 +0.2 3,652,618 - HP15_3466 0.55 +0.4 3,652,682 - HP15_3466 0.59 -1.2 3,652,729 + HP15_3466 0.62 -3.0 3,652,757 - HP15_3466 0.64 -1.3 3,652,842 + HP15_3466 0.69 +0.2 3,652,888 + HP15_3466 0.72 +1.6 3,652,891 + HP15_3466 0.72 -1.1 3,652,929 - HP15_3466 0.75 +0.2 3,652,943 + HP15_3466 0.76 -0.7 3,652,966 - HP15_3466 0.77 -0.1 3,653,099 - HP15_3466 0.85 -2.8 3,653,147 + HP15_3466 0.88 -0.1 3,653,171 - +2.5 3,653,174 - +0.6 3,653,200 + +1.1 3,653,219 - +0.0 3,653,256 - -0.2 3,653,287 + -0.1 3,653,291 + -0.7 3,653,389 + +0.0 3,653,511 + +0.0 3,653,531 - -0.0 3,653,598 - -0.6 3,653,641 + -0.7 3,653,651 + -1.4 3,653,821 - HP15_3467 0.16 -2.3 3,653,827 + HP15_3467 0.16 +0.3 3,653,835 - HP15_3467 0.16 +1.0 3,653,835 - HP15_3467 0.16 +0.2 3,653,854 - HP15_3467 0.17 -1.2 3,653,859 + HP15_3467 0.17 -0.8 3,653,881 - HP15_3467 0.18 +0.5 3,653,970 + HP15_3467 0.21 -0.1 3,654,029 + HP15_3467 0.24 +0.2 3,654,037 - HP15_3467 0.24 +0.2 3,654,259 - HP15_3467 0.32 -0.4 3,654,270 + HP15_3467 0.33 -0.5 3,654,271 - HP15_3467 0.33 -0.2 3,654,271 - HP15_3467 0.33 -0.1 3,654,401 - HP15_3467 0.38 -0.4 3,654,427 - HP15_3467 0.39 -0.7 3,654,436 + HP15_3467 0.39 +0.0 3,654,502 + HP15_3467 0.42 -3.2 3,654,502 + HP15_3467 0.42 +0.0 3,654,510 - HP15_3467 0.42 -1.6 3,654,510 - HP15_3467 0.42 +0.3 3,654,563 - HP15_3467 0.44 -0.9 3,654,622 - HP15_3467 0.46 -0.2 3,654,643 + HP15_3467 0.47 -0.4 3,654,679 + HP15_3467 0.48 -0.7 3,654,687 - HP15_3467 0.49 +0.3 3,654,687 - HP15_3467 0.49 -0.8 3,654,749 + HP15_3467 0.51 -1.1 3,654,755 - HP15_3467 0.51 +0.2 3,654,756 + HP15_3467 0.51 -0.2 3,654,941 + HP15_3467 0.58 +0.4 3,654,976 + HP15_3467 0.60 -2.3 3,655,006 - HP15_3467 0.61 +0.9 3,655,006 - HP15_3467 0.61 -0.1 3,655,011 - HP15_3467 0.61 +0.6 3,655,071 + HP15_3467 0.63 +0.1 3,655,081 + HP15_3467 0.64 -0.1 3,655,086 + HP15_3467 0.64 +0.5 3,655,096 + HP15_3467 0.64 +0.3 3,655,272 + HP15_3467 0.71 +1.2 3,655,279 + HP15_3467 0.71 +0.2 3,655,280 - HP15_3467 0.71 -0.2 3,655,322 + HP15_3467 0.73 +0.2 3,655,335 - HP15_3467 0.73 +0.4 3,655,360 + HP15_3467 0.74 -2.1 3,655,460 - HP15_3467 0.78 +0.4 3,655,466 + HP15_3467 0.78 +0.0 3,655,466 - HP15_3467 0.78 -0.6 3,655,479 - HP15_3467 0.79 -0.0 3,655,558 + HP15_3467 0.82 +0.7 3,655,558 + HP15_3467 0.82 -1.8 3,655,558 + HP15_3467 0.82 -3.2 3,655,566 - HP15_3467 0.82 -1.4 3,655,566 - HP15_3467 0.82 +0.6 3,655,792 + -1.9 3,655,793 - +0.1 3,655,860 - +0.3 3,656,112 + +0.2 3,656,158 + HP15_3468 0.13 -0.7 3,656,171 - HP15_3468 0.14 -1.9 3,656,328 + HP15_3468 0.33 +0.1 3,656,427 + HP15_3468 0.45 +0.0 3,656,452 + HP15_3468 0.48 -0.7 3,656,463 + HP15_3468 0.50 +0.1 3,656,471 - HP15_3468 0.51 -0.2 3,656,471 - HP15_3468 0.51 +0.0 3,656,485 - HP15_3468 0.52 -0.4 3,656,571 - HP15_3468 0.63 -0.1 3,656,574 + HP15_3468 0.63 +0.3 3,656,648 - HP15_3468 0.72 -0.1 3,656,660 + HP15_3468 0.73 -0.6 3,656,721 + HP15_3468 0.81 -0.4 3,656,775 + HP15_3468 0.87 +0.5 3,656,788 - HP15_3468 0.89 +0.7 3,656,844 + +0.5 3,656,865 - -2.5 3,656,896 + +0.6 3,657,014 - +0.6
Or see this region's nucleotide sequence