Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3444

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3443 and Psest_3444 are separated by 128 nucleotidesPsest_3444 and Psest_3445 overlap by 4 nucleotidesPsest_3445 and Psest_3446 overlap by 4 nucleotides Psest_3443: Psest_3443 - Predicted acyltransferases, at 3,613,560 to 3,614,798 _3443 Psest_3444: Psest_3444 - Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs, at 3,614,927 to 3,617,128 _3444 Psest_3445: Psest_3445 - Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs, at 3,617,125 to 3,618,111 _3445 Psest_3446: Psest_3446 - Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs, at 3,618,108 to 3,618,620 _3446 Position (kb) 3614 3615 3616 3617 3618Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3613.971 kb on + strand, within Psest_3443at 3613.972 kb on - strand, within Psest_3443at 3614.046 kb on + strand, within Psest_3443at 3614.097 kb on + strand, within Psest_3443at 3614.097 kb on + strand, within Psest_3443at 3614.097 kb on + strand, within Psest_3443at 3614.097 kb on + strand, within Psest_3443at 3614.097 kb on + strand, within Psest_3443at 3614.098 kb on - strand, within Psest_3443at 3614.098 kb on - strand, within Psest_3443at 3614.098 kb on - strand, within Psest_3443at 3614.098 kb on - strand, within Psest_3443at 3614.179 kb on - strand, within Psest_3443at 3614.179 kb on - strand, within Psest_3443at 3614.425 kb on - strand, within Psest_3443at 3614.695 kb on - strandat 3614.703 kb on + strandat 3614.703 kb on + strandat 3614.704 kb on - strandat 3614.704 kb on - strandat 3614.704 kb on - strandat 3614.704 kb on - strandat 3614.704 kb on - strandat 3614.938 kb on + strandat 3614.985 kb on + strandat 3614.986 kb on - strandat 3614.986 kb on - strandat 3615.129 kb on + strandat 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.723 kb on + strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.724 kb on - strand, within Psest_3444at 3615.954 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.987 kb on + strand, within Psest_3444at 3615.988 kb on - strand, within Psest_3444at 3616.062 kb on + strand, within Psest_3444at 3616.062 kb on + strand, within Psest_3444at 3616.062 kb on + strand, within Psest_3444at 3616.063 kb on - strand, within Psest_3444at 3616.063 kb on - strand, within Psest_3444at 3616.063 kb on - strand, within Psest_3444at 3616.063 kb on - strand, within Psest_3444at 3616.093 kb on + strand, within Psest_3444at 3616.093 kb on + strand, within Psest_3444at 3616.093 kb on + strand, within Psest_3444at 3616.094 kb on - strand, within Psest_3444at 3616.094 kb on - strand, within Psest_3444at 3616.094 kb on - strand, within Psest_3444at 3616.097 kb on + strand, within Psest_3444at 3616.098 kb on - strand, within Psest_3444at 3616.105 kb on + strand, within Psest_3444at 3616.105 kb on + strand, within Psest_3444at 3616.105 kb on + strand, within Psest_3444at 3616.105 kb on + strand, within Psest_3444at 3616.107 kb on + strand, within Psest_3444at 3616.107 kb on + strand, within Psest_3444at 3616.107 kb on + strand, within Psest_3444at 3616.108 kb on - strand, within Psest_3444at 3616.108 kb on - strand, within Psest_3444at 3616.108 kb on - strand, within Psest_3444at 3616.108 kb on - strand, within Psest_3444at 3616.108 kb on - strand, within Psest_3444at 3616.108 kb on - strand, within Psest_3444at 3616.108 kb on - strand, within Psest_3444at 3616.158 kb on + strand, within Psest_3444at 3616.158 kb on + strand, within Psest_3444at 3616.158 kb on + strand, within Psest_3444at 3616.159 kb on - strand, within Psest_3444at 3616.389 kb on + strand, within Psest_3444at 3616.558 kb on + strand, within Psest_3444at 3616.558 kb on + strand, within Psest_3444at 3616.559 kb on - strand, within Psest_3444at 3616.599 kb on + strand, within Psest_3444at 3616.815 kb on + strand, within Psest_3444at 3616.816 kb on - strand, within Psest_3444at 3616.816 kb on - strand, within Psest_3444at 3616.833 kb on + strand, within Psest_3444at 3616.878 kb on + strand, within Psest_3444at 3616.878 kb on + strand, within Psest_3444at 3617.049 kb on + strandat 3617.408 kb on + strand, within Psest_3445at 3617.408 kb on + strand, within Psest_3445at 3617.408 kb on + strand, within Psest_3445at 3617.408 kb on + strand, within Psest_3445at 3617.409 kb on - strand, within Psest_3445at 3617.409 kb on - strand, within Psest_3445at 3617.409 kb on - strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.750 kb on + strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.751 kb on - strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.756 kb on + strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.757 kb on - strand, within Psest_3445at 3617.759 kb on + strand, within Psest_3445at 3617.759 kb on + strand, within Psest_3445at 3617.759 kb on + strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3617.760 kb on - strand, within Psest_3445at 3618.038 kb on + strandat 3618.038 kb on + strandat 3618.039 kb on - strandat 3618.095 kb on + strandat 3618.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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3,613,971 + Psest_3443 0.33 -0.4
3,613,972 - Psest_3443 0.33 -0.1
3,614,046 + Psest_3443 0.39 +0.4
3,614,097 + Psest_3443 0.43 +0.6
3,614,097 + Psest_3443 0.43 -2.4
3,614,097 + Psest_3443 0.43 -0.5
3,614,097 + Psest_3443 0.43 +0.5
3,614,097 + Psest_3443 0.43 +0.6
3,614,098 - Psest_3443 0.43 +1.4
3,614,098 - Psest_3443 0.43 -0.2
3,614,098 - Psest_3443 0.43 +0.0
3,614,098 - Psest_3443 0.43 +0.3
3,614,179 - Psest_3443 0.50 -0.4
3,614,179 - Psest_3443 0.50 +0.5
3,614,425 - Psest_3443 0.70 -0.3
3,614,695 - +0.3
3,614,703 + +0.1
3,614,703 + -1.1
3,614,704 - -0.5
3,614,704 - -0.1
3,614,704 - +1.5
3,614,704 - -1.8
3,614,704 - +1.1
3,614,938 + +3.8
3,614,985 + -0.8
3,614,986 - +1.3
3,614,986 - -0.8
3,615,129 + -0.5
3,615,723 + Psest_3444 0.36 -0.2
3,615,723 + Psest_3444 0.36 -0.4
3,615,723 + Psest_3444 0.36 -1.1
3,615,723 + Psest_3444 0.36 -1.0
3,615,723 + Psest_3444 0.36 +0.1
3,615,723 + Psest_3444 0.36 -0.4
3,615,723 + Psest_3444 0.36 +1.1
3,615,723 + Psest_3444 0.36 +0.5
3,615,723 + Psest_3444 0.36 -0.1
3,615,723 + Psest_3444 0.36 +0.2
3,615,723 + Psest_3444 0.36 -0.4
3,615,724 - Psest_3444 0.36 +0.8
3,615,724 - Psest_3444 0.36 -0.2
3,615,724 - Psest_3444 0.36 +0.3
3,615,724 - Psest_3444 0.36 +1.6
3,615,724 - Psest_3444 0.36 -0.2
3,615,724 - Psest_3444 0.36 +1.3
3,615,724 - Psest_3444 0.36 +0.0
3,615,724 - Psest_3444 0.36 +0.8
3,615,724 - Psest_3444 0.36 -1.5
3,615,724 - Psest_3444 0.36 -2.0
3,615,724 - Psest_3444 0.36 +0.2
3,615,724 - Psest_3444 0.36 +0.1
3,615,724 - Psest_3444 0.36 +0.5
3,615,724 - Psest_3444 0.36 -1.0
3,615,954 + Psest_3444 0.47 +0.2
3,615,987 + Psest_3444 0.48 -0.3
3,615,987 + Psest_3444 0.48 +0.0
3,615,987 + Psest_3444 0.48 +1.2
3,615,987 + Psest_3444 0.48 +1.2
3,615,987 + Psest_3444 0.48 -0.4
3,615,987 + Psest_3444 0.48 +1.2
3,615,987 + Psest_3444 0.48 -0.6
3,615,987 + Psest_3444 0.48 +0.4
3,615,988 - Psest_3444 0.48 +0.2
3,616,062 + Psest_3444 0.52 +0.4
3,616,062 + Psest_3444 0.52 -1.5
3,616,062 + Psest_3444 0.52 -0.8
3,616,063 - Psest_3444 0.52 +0.5
3,616,063 - Psest_3444 0.52 -0.2
3,616,063 - Psest_3444 0.52 -0.0
3,616,063 - Psest_3444 0.52 -0.4
3,616,093 + Psest_3444 0.53 +1.1
3,616,093 + Psest_3444 0.53 +1.8
3,616,093 + Psest_3444 0.53 -1.1
3,616,094 - Psest_3444 0.53 +0.4
3,616,094 - Psest_3444 0.53 -0.1
3,616,094 - Psest_3444 0.53 +0.1
3,616,097 + Psest_3444 0.53 -0.0
3,616,098 - Psest_3444 0.53 +0.1
3,616,105 + Psest_3444 0.53 -0.5
3,616,105 + Psest_3444 0.53 +0.2
3,616,105 + Psest_3444 0.53 +1.2
3,616,105 + Psest_3444 0.53 -0.1
3,616,107 + Psest_3444 0.54 -1.0
3,616,107 + Psest_3444 0.54 -2.7
3,616,107 + Psest_3444 0.54 +0.8
3,616,108 - Psest_3444 0.54 -0.1
3,616,108 - Psest_3444 0.54 +2.8
3,616,108 - Psest_3444 0.54 +0.6
3,616,108 - Psest_3444 0.54 +0.2
3,616,108 - Psest_3444 0.54 -0.2
3,616,108 - Psest_3444 0.54 -0.5
3,616,108 - Psest_3444 0.54 +0.4
3,616,158 + Psest_3444 0.56 -2.0
3,616,158 + Psest_3444 0.56 +0.6
3,616,158 + Psest_3444 0.56 -0.8
3,616,159 - Psest_3444 0.56 +1.5
3,616,389 + Psest_3444 0.66 +0.5
3,616,558 + Psest_3444 0.74 +1.0
3,616,558 + Psest_3444 0.74 +0.0
3,616,559 - Psest_3444 0.74 +0.4
3,616,599 + Psest_3444 0.76 +0.3
3,616,815 + Psest_3444 0.86 +0.5
3,616,816 - Psest_3444 0.86 -0.3
3,616,816 - Psest_3444 0.86 +0.6
3,616,833 + Psest_3444 0.87 +0.5
3,616,878 + Psest_3444 0.89 -0.7
3,616,878 + Psest_3444 0.89 -0.4
3,617,049 + -1.1
3,617,408 + Psest_3445 0.29 +0.8
3,617,408 + Psest_3445 0.29 +1.1
3,617,408 + Psest_3445 0.29 +0.2
3,617,408 + Psest_3445 0.29 +0.5
3,617,409 - Psest_3445 0.29 +1.1
3,617,409 - Psest_3445 0.29 -0.0
3,617,409 - Psest_3445 0.29 +0.1
3,617,750 + Psest_3445 0.63 -0.4
3,617,750 + Psest_3445 0.63 +0.7
3,617,750 + Psest_3445 0.63 -0.1
3,617,750 + Psest_3445 0.63 -0.6
3,617,751 - Psest_3445 0.63 +0.9
3,617,751 - Psest_3445 0.63 +0.7
3,617,751 - Psest_3445 0.63 +0.8
3,617,751 - Psest_3445 0.63 +1.2
3,617,756 + Psest_3445 0.64 +0.7
3,617,756 + Psest_3445 0.64 +0.3
3,617,756 + Psest_3445 0.64 +0.8
3,617,756 + Psest_3445 0.64 +0.4
3,617,756 + Psest_3445 0.64 +0.2
3,617,757 - Psest_3445 0.64 +1.3
3,617,757 - Psest_3445 0.64 +0.6
3,617,757 - Psest_3445 0.64 +0.3
3,617,757 - Psest_3445 0.64 -0.1
3,617,757 - Psest_3445 0.64 -1.1
3,617,757 - Psest_3445 0.64 +0.6
3,617,759 + Psest_3445 0.64 -0.4
3,617,759 + Psest_3445 0.64 -2.0
3,617,759 + Psest_3445 0.64 +0.2
3,617,760 - Psest_3445 0.64 -0.4
3,617,760 - Psest_3445 0.64 +0.7
3,617,760 - Psest_3445 0.64 -0.5
3,617,760 - Psest_3445 0.64 -1.4
3,617,760 - Psest_3445 0.64 +0.8
3,617,760 - Psest_3445 0.64 -1.3
3,617,760 - Psest_3445 0.64 -0.0
3,618,038 + +0.4
3,618,038 + +0.0
3,618,039 - +0.3
3,618,095 + -0.0
3,618,096 - -0.4

Or see this region's nucleotide sequence