Strain Fitness in Marinobacter adhaerens HP15 around HP15_3178

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3177 and HP15_3178 are separated by 70 nucleotidesHP15_3178 and HP15_3179 are separated by 117 nucleotidesHP15_3179 and HP15_3180 are separated by 157 nucleotides HP15_3177: HP15_3177 - conserved hypothetical protein, secreted, at 3,330,645 to 3,331,766 _3177 HP15_3178: HP15_3178 - conserved hypothetical protein, at 3,331,837 to 3,333,069 _3178 HP15_3179: HP15_3179 - protein containing DUF1826, at 3,333,187 to 3,333,822 _3179 HP15_3180: HP15_3180 - ABC transporter, ATP-binding protein, at 3,333,980 to 3,334,651 _3180 Position (kb) 3331 3332 3333 3334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3330.901 kb on - strand, within HP15_3177at 3331.178 kb on + strand, within HP15_3177at 3331.218 kb on + strand, within HP15_3177at 3331.218 kb on + strand, within HP15_3177at 3331.226 kb on - strand, within HP15_3177at 3331.260 kb on - strand, within HP15_3177at 3331.280 kb on - strandat 3331.299 kb on + strand, within HP15_3177at 3331.314 kb on + strand, within HP15_3177at 3331.561 kb on + strand, within HP15_3177at 3331.569 kb on - strand, within HP15_3177at 3331.571 kb on - strand, within HP15_3177at 3331.593 kb on - strand, within HP15_3177at 3331.595 kb on + strand, within HP15_3177at 3331.603 kb on - strand, within HP15_3177at 3331.610 kb on + strand, within HP15_3177at 3331.630 kb on - strand, within HP15_3177at 3331.728 kb on - strandat 3331.772 kb on - strandat 3331.772 kb on - strandat 3331.825 kb on + strandat 3331.971 kb on - strand, within HP15_3178at 3332.043 kb on - strand, within HP15_3178at 3332.061 kb on - strand, within HP15_3178at 3332.066 kb on - strand, within HP15_3178at 3332.093 kb on + strand, within HP15_3178at 3332.109 kb on + strand, within HP15_3178at 3332.161 kb on - strand, within HP15_3178at 3332.163 kb on + strand, within HP15_3178at 3332.166 kb on - strand, within HP15_3178at 3332.173 kb on + strand, within HP15_3178at 3332.173 kb on + strand, within HP15_3178at 3332.181 kb on - strand, within HP15_3178at 3332.181 kb on - strand, within HP15_3178at 3332.181 kb on - strand, within HP15_3178at 3332.190 kb on + strand, within HP15_3178at 3332.201 kb on + strand, within HP15_3178at 3332.268 kb on + strand, within HP15_3178at 3332.289 kb on + strand, within HP15_3178at 3332.302 kb on - strand, within HP15_3178at 3332.303 kb on + strand, within HP15_3178at 3332.313 kb on + strand, within HP15_3178at 3332.329 kb on - strand, within HP15_3178at 3332.357 kb on + strand, within HP15_3178at 3332.406 kb on + strand, within HP15_3178at 3332.459 kb on - strand, within HP15_3178at 3332.609 kb on + strand, within HP15_3178at 3332.669 kb on - strand, within HP15_3178at 3332.758 kb on - strand, within HP15_3178at 3332.818 kb on - strand, within HP15_3178at 3332.818 kb on - strand, within HP15_3178at 3332.888 kb on + strand, within HP15_3178at 3332.934 kb on + strand, within HP15_3178at 3332.950 kb on + strandat 3332.965 kb on - strandat 3332.972 kb on - strandat 3332.996 kb on - strandat 3333.007 kb on + strandat 3333.069 kb on + strandat 3333.092 kb on + strandat 3333.224 kb on + strandat 3333.224 kb on + strandat 3333.360 kb on + strand, within HP15_3179at 3333.478 kb on - strand, within HP15_3179at 3333.535 kb on - strand, within HP15_3179at 3333.580 kb on + strand, within HP15_3179at 3333.626 kb on + strand, within HP15_3179at 3333.626 kb on + strand, within HP15_3179at 3333.703 kb on - strand, within HP15_3179at 3333.729 kb on + strand, within HP15_3179at 3333.851 kb on + strandat 3333.859 kb on - strandat 3333.859 kb on - strandat 3334.002 kb on - strandat 3334.016 kb on - strandat 3334.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,330,901 - HP15_3177 0.23 +0.3
3,331,178 + HP15_3177 0.48 -0.2
3,331,218 + HP15_3177 0.51 -0.6
3,331,218 + HP15_3177 0.51 +0.1
3,331,226 - HP15_3177 0.52 -1.0
3,331,260 - HP15_3177 0.55 -3.3
3,331,280 - -0.5
3,331,299 + HP15_3177 0.58 +0.1
3,331,314 + HP15_3177 0.60 +2.3
3,331,561 + HP15_3177 0.82 -0.2
3,331,569 - HP15_3177 0.82 -0.0
3,331,571 - HP15_3177 0.83 +0.2
3,331,593 - HP15_3177 0.84 +0.2
3,331,595 + HP15_3177 0.85 +0.2
3,331,603 - HP15_3177 0.85 -0.6
3,331,610 + HP15_3177 0.86 -1.1
3,331,630 - HP15_3177 0.88 +0.2
3,331,728 - +0.1
3,331,772 - -0.8
3,331,772 - -0.6
3,331,825 + +0.0
3,331,971 - HP15_3178 0.11 -1.3
3,332,043 - HP15_3178 0.17 +0.0
3,332,061 - HP15_3178 0.18 -0.1
3,332,066 - HP15_3178 0.19 +0.5
3,332,093 + HP15_3178 0.21 -0.6
3,332,109 + HP15_3178 0.22 -1.6
3,332,161 - HP15_3178 0.26 +0.6
3,332,163 + HP15_3178 0.26 +0.1
3,332,166 - HP15_3178 0.27 -0.7
3,332,173 + HP15_3178 0.27 +0.7
3,332,173 + HP15_3178 0.27 -0.0
3,332,181 - HP15_3178 0.28 -0.2
3,332,181 - HP15_3178 0.28 -1.7
3,332,181 - HP15_3178 0.28 -1.1
3,332,190 + HP15_3178 0.29 -0.9
3,332,201 + HP15_3178 0.30 +0.7
3,332,268 + HP15_3178 0.35 +0.4
3,332,289 + HP15_3178 0.37 +0.1
3,332,302 - HP15_3178 0.38 -0.5
3,332,303 + HP15_3178 0.38 -1.1
3,332,313 + HP15_3178 0.39 -0.3
3,332,329 - HP15_3178 0.40 -0.1
3,332,357 + HP15_3178 0.42 +0.5
3,332,406 + HP15_3178 0.46 -2.7
3,332,459 - HP15_3178 0.50 -1.4
3,332,609 + HP15_3178 0.63 +0.0
3,332,669 - HP15_3178 0.67 -2.3
3,332,758 - HP15_3178 0.75 -0.4
3,332,818 - HP15_3178 0.80 -0.8
3,332,818 - HP15_3178 0.80 +0.0
3,332,888 + HP15_3178 0.85 -0.7
3,332,934 + HP15_3178 0.89 +0.4
3,332,950 + -1.1
3,332,965 - +1.0
3,332,972 - +0.6
3,332,996 - -0.0
3,333,007 + -0.2
3,333,069 + -0.8
3,333,092 + -1.7
3,333,224 + +1.7
3,333,224 + +1.4
3,333,360 + HP15_3179 0.27 -1.1
3,333,478 - HP15_3179 0.46 +0.4
3,333,535 - HP15_3179 0.55 +0.3
3,333,580 + HP15_3179 0.62 +0.7
3,333,626 + HP15_3179 0.69 -2.2
3,333,626 + HP15_3179 0.69 -1.8
3,333,703 - HP15_3179 0.81 -0.3
3,333,729 + HP15_3179 0.85 -2.1
3,333,851 + -0.1
3,333,859 - +0.9
3,333,859 - -0.0
3,334,002 - -3.0
3,334,016 - -2.5
3,334,040 - +0.0

Or see this region's nucleotide sequence