Strain Fitness in Marinobacter adhaerens HP15 around HP15_3162

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3161 and HP15_3162 are separated by 47 nucleotidesHP15_3162 and HP15_3163 overlap by 2 nucleotidesHP15_3163 and HP15_3164 are separated by 299 nucleotides HP15_3161: HP15_3161 - extracellular solute-binding protein, family 3, at 3,315,210 to 3,316,220 _3161 HP15_3162: HP15_3162 - cytochrome c550, at 3,316,268 to 3,316,654 _3162 HP15_3163: HP15_3163 - hypothetical protein, at 3,316,653 to 3,316,763 _3163 HP15_3164: HP15_3164 - quinoprotein alcohol dehydrogenase, at 3,317,063 to 3,318,917 _3164 Position (kb) 3316 3317Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3315.346 kb on + strand, within HP15_3161at 3315.354 kb on - strand, within HP15_3161at 3315.369 kb on + strand, within HP15_3161at 3315.377 kb on - strand, within HP15_3161at 3315.377 kb on - strand, within HP15_3161at 3315.466 kb on + strand, within HP15_3161at 3315.537 kb on + strand, within HP15_3161at 3315.540 kb on - strand, within HP15_3161at 3315.544 kb on + strand, within HP15_3161at 3315.564 kb on + strand, within HP15_3161at 3315.566 kb on - strand, within HP15_3161at 3315.629 kb on + strand, within HP15_3161at 3315.754 kb on - strand, within HP15_3161at 3315.815 kb on - strand, within HP15_3161at 3315.821 kb on - strand, within HP15_3161at 3315.837 kb on - strand, within HP15_3161at 3315.867 kb on + strand, within HP15_3161at 3315.894 kb on - strand, within HP15_3161at 3315.990 kb on + strand, within HP15_3161at 3315.999 kb on - strand, within HP15_3161at 3316.065 kb on + strand, within HP15_3161at 3316.134 kb on + strandat 3316.141 kb on - strandat 3316.163 kb on - strandat 3316.214 kb on - strandat 3316.222 kb on + strandat 3316.249 kb on - strandat 3316.264 kb on - strandat 3316.264 kb on - strandat 3316.298 kb on + strandat 3316.325 kb on - strand, within HP15_3162at 3316.376 kb on - strand, within HP15_3162at 3316.383 kb on + strand, within HP15_3162at 3316.514 kb on - strand, within HP15_3162at 3316.529 kb on + strand, within HP15_3162at 3316.572 kb on - strand, within HP15_3162at 3316.614 kb on + strand, within HP15_3162at 3316.622 kb on - strandat 3316.622 kb on - strandat 3316.635 kb on + strandat 3316.698 kb on + strand, within HP15_3163at 3316.706 kb on - strand, within HP15_3163at 3316.780 kb on + strandat 3316.785 kb on + strandat 3316.851 kb on + strandat 3317.042 kb on - strandat 3317.112 kb on + strandat 3317.118 kb on - strandat 3317.209 kb on - strandat 3317.209 kb on - strandat 3317.228 kb on + strandat 3317.258 kb on - strand, within HP15_3164at 3317.270 kb on - strand, within HP15_3164at 3317.272 kb on + strand, within HP15_3164at 3317.272 kb on + strand, within HP15_3164at 3317.272 kb on + strand, within HP15_3164at 3317.470 kb on - strand, within HP15_3164at 3317.490 kb on - strand, within HP15_3164at 3317.506 kb on - strand, within HP15_3164at 3317.614 kb on - strand, within HP15_3164

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,315,346 + HP15_3161 0.13 +0.9
3,315,354 - HP15_3161 0.14 +0.2
3,315,369 + HP15_3161 0.16 +0.6
3,315,377 - HP15_3161 0.17 +0.2
3,315,377 - HP15_3161 0.17 +0.6
3,315,466 + HP15_3161 0.25 -0.8
3,315,537 + HP15_3161 0.32 -0.1
3,315,540 - HP15_3161 0.33 -0.1
3,315,544 + HP15_3161 0.33 +0.5
3,315,564 + HP15_3161 0.35 -0.1
3,315,566 - HP15_3161 0.35 +1.1
3,315,629 + HP15_3161 0.41 +0.1
3,315,754 - HP15_3161 0.54 +0.2
3,315,815 - HP15_3161 0.60 -0.3
3,315,821 - HP15_3161 0.60 +0.2
3,315,837 - HP15_3161 0.62 +0.5
3,315,867 + HP15_3161 0.65 -0.1
3,315,894 - HP15_3161 0.68 +0.4
3,315,990 + HP15_3161 0.77 +0.6
3,315,999 - HP15_3161 0.78 +0.1
3,316,065 + HP15_3161 0.85 -0.5
3,316,134 + -0.7
3,316,141 - -0.0
3,316,163 - +3.3
3,316,214 - -0.1
3,316,222 + +0.4
3,316,249 - -0.6
3,316,264 - -0.8
3,316,264 - -0.1
3,316,298 + +0.2
3,316,325 - HP15_3162 0.15 -0.5
3,316,376 - HP15_3162 0.28 -0.5
3,316,383 + HP15_3162 0.30 -0.3
3,316,514 - HP15_3162 0.64 -1.6
3,316,529 + HP15_3162 0.67 -1.1
3,316,572 - HP15_3162 0.79 -0.4
3,316,614 + HP15_3162 0.89 -0.6
3,316,622 - -0.8
3,316,622 - -2.9
3,316,635 + -0.9
3,316,698 + HP15_3163 0.41 -1.2
3,316,706 - HP15_3163 0.48 -0.5
3,316,780 + -0.1
3,316,785 + -1.0
3,316,851 + +0.0
3,317,042 - -0.9
3,317,112 + -1.6
3,317,118 - -1.3
3,317,209 - -0.3
3,317,209 - -0.3
3,317,228 + -0.8
3,317,258 - HP15_3164 0.11 -2.4
3,317,270 - HP15_3164 0.11 -1.6
3,317,272 + HP15_3164 0.11 -0.3
3,317,272 + HP15_3164 0.11 +0.0
3,317,272 + HP15_3164 0.11 +0.4
3,317,470 - HP15_3164 0.22 -0.5
3,317,490 - HP15_3164 0.23 -1.0
3,317,506 - HP15_3164 0.24 -0.9
3,317,614 - HP15_3164 0.30 +0.1

Or see this region's nucleotide sequence