Strain Fitness in Marinobacter adhaerens HP15 around HP15_3159

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3158 and HP15_3159 overlap by 1 nucleotidesHP15_3159 and HP15_3160 are separated by 63 nucleotides HP15_3158: HP15_3158 - binding-protein-dependent transport systems inner membrane component, at 3,311,639 to 3,312,448 _3158 HP15_3159: HP15_3159 - spermidine/putrescine ABC transporter ATPase subunit, at 3,312,448 to 3,313,233 _3159 HP15_3160: HP15_3160 - quinoprotein alcohol dehydrogenase, at 3,313,297 to 3,315,072 _3160 Position (kb) 3312 3313 3314Strain fitness (log2 ratio) -3 -2 -1 0 1at 3311.529 kb on + strandat 3311.534 kb on - strandat 3311.534 kb on - strandat 3311.548 kb on + strandat 3311.598 kb on + strandat 3311.710 kb on + strandat 3311.770 kb on - strand, within HP15_3158at 3311.780 kb on - strand, within HP15_3158at 3311.780 kb on - strand, within HP15_3158at 3311.864 kb on + strand, within HP15_3158at 3311.947 kb on + strand, within HP15_3158at 3311.947 kb on + strand, within HP15_3158at 3311.947 kb on + strand, within HP15_3158at 3311.955 kb on - strand, within HP15_3158at 3311.974 kb on - strand, within HP15_3158at 3312.009 kb on - strand, within HP15_3158at 3312.061 kb on - strand, within HP15_3158at 3312.127 kb on - strand, within HP15_3158at 3312.188 kb on + strand, within HP15_3158at 3312.193 kb on + strand, within HP15_3158at 3312.222 kb on - strand, within HP15_3158at 3312.336 kb on - strand, within HP15_3158at 3312.349 kb on - strand, within HP15_3158at 3312.442 kb on + strandat 3312.455 kb on - strandat 3312.489 kb on - strandat 3312.509 kb on + strandat 3312.509 kb on + strandat 3312.509 kb on + strandat 3312.517 kb on - strandat 3312.521 kb on + strandat 3312.557 kb on + strand, within HP15_3159at 3312.565 kb on - strand, within HP15_3159at 3312.607 kb on + strand, within HP15_3159at 3312.701 kb on + strand, within HP15_3159at 3312.876 kb on - strand, within HP15_3159at 3313.066 kb on - strand, within HP15_3159at 3313.179 kb on + strandat 3313.195 kb on - strandat 3313.218 kb on + strandat 3313.334 kb on + strandat 3313.334 kb on + strandat 3313.342 kb on - strandat 3313.343 kb on + strandat 3313.346 kb on - strandat 3313.353 kb on + strandat 3313.370 kb on + strandat 3313.378 kb on - strandat 3313.396 kb on - strandat 3313.401 kb on - strandat 3313.408 kb on + strandat 3313.429 kb on + strandat 3313.458 kb on - strandat 3313.464 kb on - strandat 3313.511 kb on - strand, within HP15_3160at 3313.548 kb on - strand, within HP15_3160at 3313.592 kb on + strand, within HP15_3160at 3313.607 kb on - strand, within HP15_3160at 3313.698 kb on + strand, within HP15_3160at 3313.708 kb on + strand, within HP15_3160at 3313.716 kb on - strand, within HP15_3160at 3313.857 kb on - strand, within HP15_3160at 3313.858 kb on + strand, within HP15_3160at 3313.973 kb on + strand, within HP15_3160at 3314.016 kb on - strand, within HP15_3160at 3314.060 kb on + strand, within HP15_3160at 3314.113 kb on - strand, within HP15_3160at 3314.121 kb on - strand, within HP15_3160at 3314.124 kb on + strand, within HP15_3160at 3314.135 kb on + strand, within HP15_3160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,311,529 + +0.9
3,311,534 - -1.1
3,311,534 - -0.8
3,311,548 + +0.9
3,311,598 + -0.2
3,311,710 + +0.2
3,311,770 - HP15_3158 0.16 -1.9
3,311,780 - HP15_3158 0.17 +0.3
3,311,780 - HP15_3158 0.17 -0.3
3,311,864 + HP15_3158 0.28 +0.3
3,311,947 + HP15_3158 0.38 -1.4
3,311,947 + HP15_3158 0.38 +0.2
3,311,947 + HP15_3158 0.38 -0.4
3,311,955 - HP15_3158 0.39 +0.2
3,311,974 - HP15_3158 0.41 +0.2
3,312,009 - HP15_3158 0.46 -0.2
3,312,061 - HP15_3158 0.52 +0.4
3,312,127 - HP15_3158 0.60 +0.1
3,312,188 + HP15_3158 0.68 -0.5
3,312,193 + HP15_3158 0.68 +0.1
3,312,222 - HP15_3158 0.72 -0.2
3,312,336 - HP15_3158 0.86 -0.5
3,312,349 - HP15_3158 0.88 -1.9
3,312,442 + -0.1
3,312,455 - +0.1
3,312,489 - -1.6
3,312,509 + +0.4
3,312,509 + -0.1
3,312,509 + +0.2
3,312,517 - +0.4
3,312,521 + +1.0
3,312,557 + HP15_3159 0.14 -2.9
3,312,565 - HP15_3159 0.15 +0.6
3,312,607 + HP15_3159 0.20 -1.0
3,312,701 + HP15_3159 0.32 +0.4
3,312,876 - HP15_3159 0.54 -1.1
3,313,066 - HP15_3159 0.79 -3.5
3,313,179 + +0.6
3,313,195 - +0.4
3,313,218 + +0.1
3,313,334 + -0.8
3,313,334 + -0.2
3,313,342 - +0.1
3,313,343 + +0.4
3,313,346 - +0.3
3,313,353 + -0.2
3,313,370 + +0.4
3,313,378 - +0.6
3,313,396 - -0.6
3,313,401 - -0.8
3,313,408 + +0.3
3,313,429 + -1.3
3,313,458 - -2.6
3,313,464 - -0.3
3,313,511 - HP15_3160 0.12 -0.3
3,313,548 - HP15_3160 0.14 -1.6
3,313,592 + HP15_3160 0.17 +0.2
3,313,607 - HP15_3160 0.17 +0.5
3,313,698 + HP15_3160 0.23 +1.1
3,313,708 + HP15_3160 0.23 -0.4
3,313,716 - HP15_3160 0.24 +0.5
3,313,857 - HP15_3160 0.32 -1.3
3,313,858 + HP15_3160 0.32 -1.6
3,313,973 + HP15_3160 0.38 -0.9
3,314,016 - HP15_3160 0.40 +0.2
3,314,060 + HP15_3160 0.43 +0.2
3,314,113 - HP15_3160 0.46 -2.2
3,314,121 - HP15_3160 0.46 -0.7
3,314,124 + HP15_3160 0.47 -0.2
3,314,135 + HP15_3160 0.47 +0.2

Or see this region's nucleotide sequence