Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3158 and HP15_3159 overlap by 1 nucleotides HP15_3159 and HP15_3160 are separated by 63 nucleotides
HP15_3158: HP15_3158 - binding-protein-dependent transport systems inner membrane component, at 3,311,639 to 3,312,448
_3158
HP15_3159: HP15_3159 - spermidine/putrescine ABC transporter ATPase subunit, at 3,312,448 to 3,313,233
_3159
HP15_3160: HP15_3160 - quinoprotein alcohol dehydrogenase, at 3,313,297 to 3,315,072
_3160
Position (kb)
3312
3313
3314 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3311.529 kb on + strand at 3311.534 kb on - strand at 3311.534 kb on - strand at 3311.548 kb on + strand at 3311.598 kb on + strand at 3311.710 kb on + strand at 3311.770 kb on - strand, within HP15_3158 at 3311.780 kb on - strand, within HP15_3158 at 3311.780 kb on - strand, within HP15_3158 at 3311.864 kb on + strand, within HP15_3158 at 3311.947 kb on + strand, within HP15_3158 at 3311.947 kb on + strand, within HP15_3158 at 3311.947 kb on + strand, within HP15_3158 at 3311.955 kb on - strand, within HP15_3158 at 3311.974 kb on - strand, within HP15_3158 at 3312.009 kb on - strand, within HP15_3158 at 3312.061 kb on - strand, within HP15_3158 at 3312.127 kb on - strand, within HP15_3158 at 3312.188 kb on + strand, within HP15_3158 at 3312.193 kb on + strand, within HP15_3158 at 3312.222 kb on - strand, within HP15_3158 at 3312.336 kb on - strand, within HP15_3158 at 3312.349 kb on - strand, within HP15_3158 at 3312.442 kb on + strand at 3312.455 kb on - strand at 3312.489 kb on - strand at 3312.509 kb on + strand at 3312.509 kb on + strand at 3312.509 kb on + strand at 3312.517 kb on - strand at 3312.521 kb on + strand at 3312.557 kb on + strand, within HP15_3159 at 3312.565 kb on - strand, within HP15_3159 at 3312.607 kb on + strand, within HP15_3159 at 3312.701 kb on + strand, within HP15_3159 at 3312.876 kb on - strand, within HP15_3159 at 3313.066 kb on - strand, within HP15_3159 at 3313.179 kb on + strand at 3313.195 kb on - strand at 3313.218 kb on + strand at 3313.334 kb on + strand at 3313.334 kb on + strand at 3313.342 kb on - strand at 3313.343 kb on + strand at 3313.346 kb on - strand at 3313.353 kb on + strand at 3313.370 kb on + strand at 3313.378 kb on - strand at 3313.396 kb on - strand at 3313.401 kb on - strand at 3313.408 kb on + strand at 3313.429 kb on + strand at 3313.458 kb on - strand at 3313.464 kb on - strand at 3313.511 kb on - strand, within HP15_3160 at 3313.548 kb on - strand, within HP15_3160 at 3313.592 kb on + strand, within HP15_3160 at 3313.607 kb on - strand, within HP15_3160 at 3313.698 kb on + strand, within HP15_3160 at 3313.708 kb on + strand, within HP15_3160 at 3313.716 kb on - strand, within HP15_3160 at 3313.857 kb on - strand, within HP15_3160 at 3313.858 kb on + strand, within HP15_3160 at 3313.973 kb on + strand, within HP15_3160 at 3314.016 kb on - strand, within HP15_3160 at 3314.060 kb on + strand, within HP15_3160 at 3314.113 kb on - strand, within HP15_3160 at 3314.121 kb on - strand, within HP15_3160 at 3314.124 kb on + strand, within HP15_3160 at 3314.135 kb on + strand, within HP15_3160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,311,529 + +0.9 3,311,534 - -1.1 3,311,534 - -0.8 3,311,548 + +0.9 3,311,598 + -0.2 3,311,710 + +0.2 3,311,770 - HP15_3158 0.16 -1.9 3,311,780 - HP15_3158 0.17 +0.3 3,311,780 - HP15_3158 0.17 -0.3 3,311,864 + HP15_3158 0.28 +0.3 3,311,947 + HP15_3158 0.38 -1.4 3,311,947 + HP15_3158 0.38 +0.2 3,311,947 + HP15_3158 0.38 -0.4 3,311,955 - HP15_3158 0.39 +0.2 3,311,974 - HP15_3158 0.41 +0.2 3,312,009 - HP15_3158 0.46 -0.2 3,312,061 - HP15_3158 0.52 +0.4 3,312,127 - HP15_3158 0.60 +0.1 3,312,188 + HP15_3158 0.68 -0.5 3,312,193 + HP15_3158 0.68 +0.1 3,312,222 - HP15_3158 0.72 -0.2 3,312,336 - HP15_3158 0.86 -0.5 3,312,349 - HP15_3158 0.88 -1.9 3,312,442 + -0.1 3,312,455 - +0.1 3,312,489 - -1.6 3,312,509 + +0.4 3,312,509 + -0.1 3,312,509 + +0.2 3,312,517 - +0.4 3,312,521 + +1.0 3,312,557 + HP15_3159 0.14 -2.9 3,312,565 - HP15_3159 0.15 +0.6 3,312,607 + HP15_3159 0.20 -1.0 3,312,701 + HP15_3159 0.32 +0.4 3,312,876 - HP15_3159 0.54 -1.1 3,313,066 - HP15_3159 0.79 -3.5 3,313,179 + +0.6 3,313,195 - +0.4 3,313,218 + +0.1 3,313,334 + -0.8 3,313,334 + -0.2 3,313,342 - +0.1 3,313,343 + +0.4 3,313,346 - +0.3 3,313,353 + -0.2 3,313,370 + +0.4 3,313,378 - +0.6 3,313,396 - -0.6 3,313,401 - -0.8 3,313,408 + +0.3 3,313,429 + -1.3 3,313,458 - -2.6 3,313,464 - -0.3 3,313,511 - HP15_3160 0.12 -0.3 3,313,548 - HP15_3160 0.14 -1.6 3,313,592 + HP15_3160 0.17 +0.2 3,313,607 - HP15_3160 0.17 +0.5 3,313,698 + HP15_3160 0.23 +1.1 3,313,708 + HP15_3160 0.23 -0.4 3,313,716 - HP15_3160 0.24 +0.5 3,313,857 - HP15_3160 0.32 -1.3 3,313,858 + HP15_3160 0.32 -1.6 3,313,973 + HP15_3160 0.38 -0.9 3,314,016 - HP15_3160 0.40 +0.2 3,314,060 + HP15_3160 0.43 +0.2 3,314,113 - HP15_3160 0.46 -2.2 3,314,121 - HP15_3160 0.46 -0.7 3,314,124 + HP15_3160 0.47 -0.2 3,314,135 + HP15_3160 0.47 +0.2
Or see this region's nucleotide sequence