Strain Fitness in Marinobacter adhaerens HP15 around HP15_3112

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3111 and HP15_3112 are separated by 302 nucleotidesHP15_3112 and HP15_3113 are separated by 77 nucleotides HP15_3111: HP15_3111 - hypothetical protein, at 3,261,652 to 3,262,359 _3111 HP15_3112: HP15_3112 - beta-lactamase domain protein, at 3,262,662 to 3,263,627 _3112 HP15_3113: HP15_3113 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein, at 3,263,705 to 3,264,511 _3113 Position (kb) 3262 3263 3264Strain fitness (log2 ratio) -2 -1 0 1at 3261.753 kb on + strand, within HP15_3111at 3261.789 kb on + strand, within HP15_3111at 3262.142 kb on + strand, within HP15_3111at 3262.142 kb on + strand, within HP15_3111at 3262.189 kb on + strand, within HP15_3111at 3262.189 kb on + strand, within HP15_3111at 3262.382 kb on + strandat 3262.389 kb on + strandat 3262.390 kb on - strandat 3262.580 kb on - strandat 3262.610 kb on + strandat 3262.624 kb on - strandat 3262.807 kb on + strand, within HP15_3112at 3262.885 kb on + strand, within HP15_3112at 3262.917 kb on + strand, within HP15_3112at 3262.960 kb on - strand, within HP15_3112at 3263.045 kb on + strand, within HP15_3112at 3263.045 kb on + strand, within HP15_3112at 3263.060 kb on + strand, within HP15_3112at 3263.096 kb on - strand, within HP15_3112at 3263.098 kb on + strand, within HP15_3112at 3263.179 kb on - strand, within HP15_3112at 3263.224 kb on + strand, within HP15_3112at 3263.267 kb on - strand, within HP15_3112at 3263.271 kb on + strand, within HP15_3112at 3263.271 kb on + strand, within HP15_3112at 3263.286 kb on - strand, within HP15_3112at 3263.369 kb on + strand, within HP15_3112at 3263.412 kb on + strand, within HP15_3112at 3263.464 kb on + strand, within HP15_3112at 3263.501 kb on + strand, within HP15_3112at 3263.501 kb on + strand, within HP15_3112at 3263.509 kb on - strand, within HP15_3112at 3263.515 kb on - strand, within HP15_3112at 3263.523 kb on - strand, within HP15_3112at 3263.525 kb on + strand, within HP15_3112at 3263.567 kb on - strandat 3263.567 kb on - strandat 3263.596 kb on - strandat 3263.624 kb on + strandat 3263.664 kb on - strandat 3263.728 kb on + strandat 3263.728 kb on + strandat 3263.733 kb on + strandat 3263.736 kb on - strandat 3263.797 kb on + strand, within HP15_3113at 3263.804 kb on + strand, within HP15_3113at 3263.904 kb on + strand, within HP15_3113at 3264.089 kb on + strand, within HP15_3113at 3264.099 kb on + strand, within HP15_3113at 3264.171 kb on + strand, within HP15_3113at 3264.171 kb on + strand, within HP15_3113at 3264.171 kb on + strand, within HP15_3113at 3264.179 kb on - strand, within HP15_3113at 3264.202 kb on + strand, within HP15_3113at 3264.219 kb on + strand, within HP15_3113at 3264.222 kb on - strand, within HP15_3113at 3264.229 kb on + strand, within HP15_3113at 3264.237 kb on - strand, within HP15_3113at 3264.327 kb on - strand, within HP15_3113at 3264.331 kb on - strand, within HP15_3113at 3264.366 kb on + strand, within HP15_3113at 3264.413 kb on + strand, within HP15_3113at 3264.413 kb on - strand, within HP15_3113at 3264.462 kb on - strandat 3264.470 kb on + strandat 3264.484 kb on - strandat 3264.519 kb on + strandat 3264.519 kb on + strandat 3264.527 kb on - strandat 3264.529 kb on + strandat 3264.537 kb on - strandat 3264.581 kb on + strandat 3264.581 kb on + strandat 3264.586 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
3,261,753 + HP15_3111 0.14 +0.7
3,261,789 + HP15_3111 0.19 +0.6
3,262,142 + HP15_3111 0.69 +0.1
3,262,142 + HP15_3111 0.69 -2.3
3,262,189 + HP15_3111 0.76 +0.0
3,262,189 + HP15_3111 0.76 -0.7
3,262,382 + +1.0
3,262,389 + -0.2
3,262,390 - +0.5
3,262,580 - +1.1
3,262,610 + +0.4
3,262,624 - -0.2
3,262,807 + HP15_3112 0.15 -0.6
3,262,885 + HP15_3112 0.23 +0.1
3,262,917 + HP15_3112 0.26 +0.9
3,262,960 - HP15_3112 0.31 +1.3
3,263,045 + HP15_3112 0.40 +0.1
3,263,045 + HP15_3112 0.40 +0.1
3,263,060 + HP15_3112 0.41 +1.4
3,263,096 - HP15_3112 0.45 +0.8
3,263,098 + HP15_3112 0.45 +0.2
3,263,179 - HP15_3112 0.54 -0.5
3,263,224 + HP15_3112 0.58 +0.1
3,263,267 - HP15_3112 0.63 +0.6
3,263,271 + HP15_3112 0.63 -0.2
3,263,271 + HP15_3112 0.63 -0.1
3,263,286 - HP15_3112 0.65 -0.1
3,263,369 + HP15_3112 0.73 -0.2
3,263,412 + HP15_3112 0.78 +0.3
3,263,464 + HP15_3112 0.83 +0.1
3,263,501 + HP15_3112 0.87 +0.1
3,263,501 + HP15_3112 0.87 -0.1
3,263,509 - HP15_3112 0.88 +0.3
3,263,515 - HP15_3112 0.88 +0.1
3,263,523 - HP15_3112 0.89 +0.2
3,263,525 + HP15_3112 0.89 +0.3
3,263,567 - +0.7
3,263,567 - +0.2
3,263,596 - -0.1
3,263,624 + -0.8
3,263,664 - -0.2
3,263,728 + +0.5
3,263,728 + +1.0
3,263,733 + +0.3
3,263,736 - +0.4
3,263,797 + HP15_3113 0.11 -0.3
3,263,804 + HP15_3113 0.12 +0.2
3,263,904 + HP15_3113 0.25 +0.8
3,264,089 + HP15_3113 0.48 -0.6
3,264,099 + HP15_3113 0.49 -0.4
3,264,171 + HP15_3113 0.58 +0.0
3,264,171 + HP15_3113 0.58 +0.9
3,264,171 + HP15_3113 0.58 -0.1
3,264,179 - HP15_3113 0.59 +1.6
3,264,202 + HP15_3113 0.62 +0.5
3,264,219 + HP15_3113 0.64 +1.5
3,264,222 - HP15_3113 0.64 +0.7
3,264,229 + HP15_3113 0.65 +0.4
3,264,237 - HP15_3113 0.66 +0.3
3,264,327 - HP15_3113 0.77 -0.0
3,264,331 - HP15_3113 0.78 +1.1
3,264,366 + HP15_3113 0.82 -1.7
3,264,413 + HP15_3113 0.88 +0.3
3,264,413 - HP15_3113 0.88 +0.3
3,264,462 - -1.9
3,264,470 + -0.9
3,264,484 - -1.0
3,264,519 + +0.4
3,264,519 + +0.1
3,264,527 - +0.1
3,264,529 + +1.2
3,264,537 - +0.3
3,264,581 + +0.0
3,264,581 + -0.6
3,264,586 + +0.5

Or see this region's nucleotide sequence