Strain Fitness in Marinobacter adhaerens HP15 around HP15_28

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_27 and HP15_28 are separated by 289 nucleotidesHP15_28 and HP15_29 are separated by 249 nucleotides HP15_27: HP15_27 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 30,922 to 32,220 _27 HP15_28: HP15_28 - major facilitator superfamily MFS_1, at 32,510 to 33,784 _28 HP15_29: HP15_29 - methyl-accepting chemotaxis sensory transducer, at 34,034 to 35,599 _29 Position (kb) 32 33 34Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 31.535 kb on - strand, within HP15_27at 31.819 kb on + strand, within HP15_27at 31.820 kb on - strand, within HP15_27at 31.827 kb on - strand, within HP15_27at 31.827 kb on - strand, within HP15_27at 31.871 kb on - strand, within HP15_27at 31.881 kb on - strand, within HP15_27at 31.998 kb on + strand, within HP15_27at 31.999 kb on + strand, within HP15_27at 32.007 kb on - strand, within HP15_27at 32.046 kb on - strand, within HP15_27at 32.123 kb on + strandat 32.131 kb on - strandat 32.201 kb on - strandat 32.205 kb on - strandat 32.246 kb on + strandat 32.247 kb on - strandat 32.316 kb on - strandat 32.332 kb on + strandat 32.446 kb on + strandat 32.457 kb on + strandat 32.460 kb on - strandat 32.460 kb on - strandat 32.484 kb on - strandat 32.484 kb on - strandat 32.523 kb on + strandat 32.531 kb on - strandat 32.620 kb on + strandat 32.635 kb on - strandat 32.669 kb on + strand, within HP15_28at 32.669 kb on + strand, within HP15_28at 32.696 kb on + strand, within HP15_28at 32.711 kb on + strand, within HP15_28at 32.719 kb on - strand, within HP15_28at 32.768 kb on + strand, within HP15_28at 32.768 kb on + strand, within HP15_28at 32.844 kb on + strand, within HP15_28at 32.872 kb on + strand, within HP15_28at 32.880 kb on - strand, within HP15_28at 32.887 kb on - strand, within HP15_28at 32.891 kb on + strand, within HP15_28at 32.974 kb on - strand, within HP15_28at 32.986 kb on + strand, within HP15_28at 32.998 kb on + strand, within HP15_28at 32.998 kb on + strand, within HP15_28at 33.014 kb on + strand, within HP15_28at 33.022 kb on - strand, within HP15_28at 33.032 kb on - strand, within HP15_28at 33.098 kb on + strand, within HP15_28at 33.106 kb on - strand, within HP15_28at 33.114 kb on - strand, within HP15_28at 33.173 kb on - strand, within HP15_28at 33.181 kb on + strand, within HP15_28at 33.239 kb on + strand, within HP15_28at 33.315 kb on + strand, within HP15_28at 33.315 kb on + strand, within HP15_28at 33.448 kb on + strand, within HP15_28at 33.456 kb on + strand, within HP15_28at 33.489 kb on - strand, within HP15_28at 33.491 kb on + strand, within HP15_28at 33.499 kb on - strand, within HP15_28at 33.499 kb on - strand, within HP15_28at 33.557 kb on - strand, within HP15_28at 33.573 kb on - strand, within HP15_28at 33.611 kb on + strand, within HP15_28at 33.619 kb on - strand, within HP15_28at 33.670 kb on + strandat 33.670 kb on + strandat 33.670 kb on + strandat 33.686 kb on + strandat 33.686 kb on + strandat 33.712 kb on - strandat 33.774 kb on + strandat 33.780 kb on + strandat 33.788 kb on - strandat 33.788 kb on - strandat 33.818 kb on + strandat 33.821 kb on - strandat 33.826 kb on - strandat 33.835 kb on - strandat 33.934 kb on + strandat 33.935 kb on + strandat 33.942 kb on - strandat 33.967 kb on + strandat 33.972 kb on + strandat 33.983 kb on + strandat 33.991 kb on - strandat 34.037 kb on - strandat 34.037 kb on - strandat 34.105 kb on + strandat 34.116 kb on + strandat 34.116 kb on + strandat 34.124 kb on - strandat 34.124 kb on - strandat 34.150 kb on + strandat 34.150 kb on + strandat 34.187 kb on + strandat 34.187 kb on + strandat 34.227 kb on - strand, within HP15_29at 34.262 kb on - strand, within HP15_29at 34.384 kb on - strand, within HP15_29at 34.408 kb on - strand, within HP15_29at 34.417 kb on + strand, within HP15_29at 34.421 kb on + strand, within HP15_29at 34.421 kb on + strand, within HP15_29at 34.436 kb on + strand, within HP15_29at 34.436 kb on + strand, within HP15_29at 34.444 kb on - strand, within HP15_29at 34.457 kb on + strand, within HP15_29at 34.465 kb on - strand, within HP15_29at 34.465 kb on - strand, within HP15_29at 34.487 kb on + strand, within HP15_29at 34.521 kb on - strand, within HP15_29at 34.521 kb on - strand, within HP15_29at 34.553 kb on - strand, within HP15_29at 34.640 kb on - strand, within HP15_29at 34.653 kb on + strand, within HP15_29at 34.653 kb on + strand, within HP15_29at 34.661 kb on - strand, within HP15_29at 34.716 kb on - strand, within HP15_29at 34.754 kb on - strand, within HP15_29

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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31,535 - HP15_27 0.47 +0.1
31,819 + HP15_27 0.69 -3.4
31,820 - HP15_27 0.69 +1.5
31,827 - HP15_27 0.70 +0.0
31,827 - HP15_27 0.70 +0.3
31,871 - HP15_27 0.73 -0.3
31,881 - HP15_27 0.74 +0.4
31,998 + HP15_27 0.83 -3.5
31,999 + HP15_27 0.83 -0.7
32,007 - HP15_27 0.84 -3.0
32,046 - HP15_27 0.87 +0.5
32,123 + +0.1
32,131 - +0.2
32,201 - -0.8
32,205 - +0.0
32,246 + +0.5
32,247 - +0.7
32,316 - -0.4
32,332 + +0.4
32,446 + -2.5
32,457 + +0.1
32,460 - -0.1
32,460 - +0.2
32,484 - +1.0
32,484 - +0.4
32,523 + -1.1
32,531 - +2.3
32,620 + -0.0
32,635 - +1.8
32,669 + HP15_28 0.12 +0.5
32,669 + HP15_28 0.12 -3.6
32,696 + HP15_28 0.15 +0.3
32,711 + HP15_28 0.16 -0.2
32,719 - HP15_28 0.16 +0.4
32,768 + HP15_28 0.20 +0.1
32,768 + HP15_28 0.20 +0.3
32,844 + HP15_28 0.26 -2.6
32,872 + HP15_28 0.28 +0.4
32,880 - HP15_28 0.29 -2.3
32,887 - HP15_28 0.30 +0.5
32,891 + HP15_28 0.30 -1.2
32,974 - HP15_28 0.36 -0.0
32,986 + HP15_28 0.37 -0.3
32,998 + HP15_28 0.38 -0.4
32,998 + HP15_28 0.38 -2.5
33,014 + HP15_28 0.40 -0.3
33,022 - HP15_28 0.40 -0.3
33,032 - HP15_28 0.41 +0.3
33,098 + HP15_28 0.46 -0.2
33,106 - HP15_28 0.47 +0.7
33,114 - HP15_28 0.47 -0.4
33,173 - HP15_28 0.52 -2.0
33,181 + HP15_28 0.53 -0.5
33,239 + HP15_28 0.57 +0.2
33,315 + HP15_28 0.63 +1.4
33,315 + HP15_28 0.63 +0.0
33,448 + HP15_28 0.74 +2.4
33,456 + HP15_28 0.74 -2.4
33,489 - HP15_28 0.77 -1.8
33,491 + HP15_28 0.77 -1.0
33,499 - HP15_28 0.78 +0.1
33,499 - HP15_28 0.78 -1.6
33,557 - HP15_28 0.82 -0.0
33,573 - HP15_28 0.83 +0.1
33,611 + HP15_28 0.86 +1.2
33,619 - HP15_28 0.87 +0.5
33,670 + -1.2
33,670 + -0.9
33,670 + +0.1
33,686 + -0.6
33,686 + -0.1
33,712 - -0.8
33,774 + +0.1
33,780 + +1.3
33,788 - -0.7
33,788 - +1.0
33,818 + +1.8
33,821 - -0.1
33,826 - +0.6
33,835 - +0.8
33,934 + -4.2
33,935 + -0.4
33,942 - +0.4
33,967 + +0.3
33,972 + +1.0
33,983 + -0.3
33,991 - -0.9
34,037 - +0.2
34,037 - -0.0
34,105 + +0.5
34,116 + +0.2
34,116 + -0.8
34,124 - +3.2
34,124 - +0.5
34,150 + +1.6
34,150 + -0.8
34,187 + +0.3
34,187 + +1.3
34,227 - HP15_29 0.12 +1.7
34,262 - HP15_29 0.15 +0.4
34,384 - HP15_29 0.22 -2.5
34,408 - HP15_29 0.24 +0.8
34,417 + HP15_29 0.24 +0.7
34,421 + HP15_29 0.25 +1.2
34,421 + HP15_29 0.25 -2.0
34,436 + HP15_29 0.26 -1.2
34,436 + HP15_29 0.26 -0.3
34,444 - HP15_29 0.26 -0.4
34,457 + HP15_29 0.27 +0.6
34,465 - HP15_29 0.28 +2.1
34,465 - HP15_29 0.28 +0.0
34,487 + HP15_29 0.29 +0.0
34,521 - HP15_29 0.31 +0.0
34,521 - HP15_29 0.31 +0.3
34,553 - HP15_29 0.33 -2.3
34,640 - HP15_29 0.39 +0.7
34,653 + HP15_29 0.40 -0.1
34,653 + HP15_29 0.40 -0.4
34,661 - HP15_29 0.40 +0.7
34,716 - HP15_29 0.44 -0.3
34,754 - HP15_29 0.46 +0.4

Or see this region's nucleotide sequence