Strain Fitness in Marinobacter adhaerens HP15 around HP15_2490

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2488 and HP15_2489 are separated by 113 nucleotidesHP15_2489 and HP15_2490 are separated by 10 nucleotidesHP15_2490 and HP15_2491 are separated by 34 nucleotidesHP15_2491 and HP15_2492 overlap by 8 nucleotides HP15_2488: HP15_2488 - FAD dependent oxidoreductase, at 2,628,430 to 2,629,539 _2488 HP15_2489: HP15_2489 - hypothetical protein, at 2,629,653 to 2,629,766 _2489 HP15_2490: HP15_2490 - kinase, at 2,629,777 to 2,630,793 _2490 HP15_2491: HP15_2491 - kinase, at 2,630,828 to 2,631,196 _2491 HP15_2492: HP15_2492 - methyltransferase, at 2,631,189 to 2,631,965 _2492 Position (kb) 2629 2630 2631Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2628.799 kb on - strand, within HP15_2488at 2628.804 kb on - strand, within HP15_2488at 2628.804 kb on - strand, within HP15_2488at 2628.835 kb on + strand, within HP15_2488at 2629.046 kb on + strand, within HP15_2488at 2629.110 kb on - strand, within HP15_2488at 2629.278 kb on + strand, within HP15_2488at 2629.278 kb on + strand, within HP15_2488at 2629.284 kb on - strand, within HP15_2488at 2629.329 kb on - strand, within HP15_2488at 2629.359 kb on - strand, within HP15_2488at 2629.399 kb on + strand, within HP15_2488at 2629.419 kb on + strand, within HP15_2488at 2629.419 kb on + strand, within HP15_2488at 2629.427 kb on - strand, within HP15_2488at 2629.462 kb on - strandat 2629.557 kb on - strandat 2629.576 kb on - strandat 2629.652 kb on - strandat 2629.899 kb on - strand, within HP15_2490at 2629.928 kb on + strand, within HP15_2490at 2630.033 kb on - strand, within HP15_2490at 2630.075 kb on - strand, within HP15_2490at 2630.086 kb on - strand, within HP15_2490at 2630.149 kb on - strand, within HP15_2490at 2630.153 kb on + strand, within HP15_2490at 2630.180 kb on + strand, within HP15_2490at 2630.180 kb on + strand, within HP15_2490at 2630.312 kb on - strand, within HP15_2490at 2630.314 kb on + strand, within HP15_2490at 2630.314 kb on + strand, within HP15_2490at 2630.314 kb on + strand, within HP15_2490at 2630.322 kb on - strand, within HP15_2490at 2630.322 kb on - strand, within HP15_2490at 2630.322 kb on - strand, within HP15_2490at 2630.351 kb on + strand, within HP15_2490at 2630.709 kb on + strandat 2630.709 kb on + strandat 2630.745 kb on + strandat 2630.853 kb on - strandat 2631.026 kb on + strand, within HP15_2491at 2631.079 kb on - strand, within HP15_2491at 2631.225 kb on - strandat 2631.242 kb on + strandat 2631.348 kb on - strand, within HP15_2492at 2631.397 kb on + strand, within HP15_2492at 2631.402 kb on + strand, within HP15_2492at 2631.402 kb on + strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.410 kb on - strand, within HP15_2492at 2631.595 kb on - strand, within HP15_2492at 2631.654 kb on - strand, within HP15_2492at 2631.691 kb on - strand, within HP15_2492at 2631.691 kb on - strand, within HP15_2492at 2631.701 kb on - strand, within HP15_2492

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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2,628,799 - HP15_2488 0.33 +0.2
2,628,804 - HP15_2488 0.34 +0.2
2,628,804 - HP15_2488 0.34 -0.2
2,628,835 + HP15_2488 0.36 +0.5
2,629,046 + HP15_2488 0.55 +0.0
2,629,110 - HP15_2488 0.61 +0.9
2,629,278 + HP15_2488 0.76 +0.6
2,629,278 + HP15_2488 0.76 +1.5
2,629,284 - HP15_2488 0.77 -0.0
2,629,329 - HP15_2488 0.81 -2.8
2,629,359 - HP15_2488 0.84 +0.5
2,629,399 + HP15_2488 0.87 +0.2
2,629,419 + HP15_2488 0.89 -2.3
2,629,419 + HP15_2488 0.89 +0.2
2,629,427 - HP15_2488 0.90 -0.7
2,629,462 - -0.1
2,629,557 - -1.4
2,629,576 - +0.2
2,629,652 - +1.2
2,629,899 - HP15_2490 0.12 -2.5
2,629,928 + HP15_2490 0.15 -0.4
2,630,033 - HP15_2490 0.25 +0.1
2,630,075 - HP15_2490 0.29 -0.3
2,630,086 - HP15_2490 0.30 -3.9
2,630,149 - HP15_2490 0.37 -0.7
2,630,153 + HP15_2490 0.37 +0.1
2,630,180 + HP15_2490 0.40 -1.2
2,630,180 + HP15_2490 0.40 -1.8
2,630,312 - HP15_2490 0.53 -1.8
2,630,314 + HP15_2490 0.53 -0.3
2,630,314 + HP15_2490 0.53 -0.2
2,630,314 + HP15_2490 0.53 +0.0
2,630,322 - HP15_2490 0.54 -0.4
2,630,322 - HP15_2490 0.54 -0.2
2,630,322 - HP15_2490 0.54 -0.4
2,630,351 + HP15_2490 0.56 -0.9
2,630,709 + -0.3
2,630,709 + -0.1
2,630,745 + -0.8
2,630,853 - +0.1
2,631,026 + HP15_2491 0.54 -0.0
2,631,079 - HP15_2491 0.68 +1.1
2,631,225 - +0.4
2,631,242 + -0.2
2,631,348 - HP15_2492 0.20 +0.1
2,631,397 + HP15_2492 0.27 -2.2
2,631,402 + HP15_2492 0.27 +0.2
2,631,402 + HP15_2492 0.27 -0.6
2,631,410 - HP15_2492 0.28 +0.3
2,631,410 - HP15_2492 0.28 +0.2
2,631,410 - HP15_2492 0.28 +0.7
2,631,410 - HP15_2492 0.28 +0.4
2,631,595 - HP15_2492 0.52 -1.6
2,631,654 - HP15_2492 0.60 -0.9
2,631,691 - HP15_2492 0.65 +0.7
2,631,691 - HP15_2492 0.65 +0.9
2,631,701 - HP15_2492 0.66 -0.4

Or see this region's nucleotide sequence