Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2317

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2316 and Psest_2317 are separated by 154 nucleotidesPsest_2317 and Psest_2318 are separated by 93 nucleotides Psest_2316: Psest_2316 - phosphoenolpyruvate synthase, at 2,466,611 to 2,468,980 _2316 Psest_2317: Psest_2317 - Uncharacterized protein conserved in bacteria, at 2,469,135 to 2,469,953 _2317 Psest_2318: Psest_2318 - probable AcnD-accessory protein PrpF, at 2,470,047 to 2,471,234 _2318 Position (kb) 2469 2470Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2468.190 kb on + strand, within Psest_2316at 2468.190 kb on + strand, within Psest_2316at 2468.191 kb on - strand, within Psest_2316at 2468.271 kb on + strand, within Psest_2316at 2468.272 kb on - strand, within Psest_2316at 2468.966 kb on + strandat 2468.966 kb on + strandat 2468.967 kb on - strandat 2468.967 kb on - strandat 2468.967 kb on - strandat 2468.967 kb on - strandat 2468.967 kb on - strandat 2468.967 kb on - strandat 2468.967 kb on - strandat 2468.971 kb on - strandat 2468.971 kb on - strandat 2468.971 kb on - strandat 2468.971 kb on - strandat 2468.971 kb on - strandat 2468.971 kb on - strandat 2468.971 kb on - strandat 2468.975 kb on + strandat 2468.975 kb on + strandat 2468.975 kb on + strandat 2468.976 kb on - strandat 2468.997 kb on + strandat 2468.998 kb on - strandat 2468.998 kb on - strandat 2468.998 kb on - strandat 2468.998 kb on - strandat 2468.998 kb on - strandat 2468.998 kb on - strandat 2468.998 kb on - strandat 2468.998 kb on - strandat 2469.055 kb on - strandat 2469.055 kb on - strandat 2469.055 kb on - strandat 2469.058 kb on + strandat 2469.093 kb on + strandat 2469.093 kb on + strandat 2469.097 kb on - strandat 2469.097 kb on - strandat 2469.099 kb on - strandat 2469.099 kb on - strandat 2469.223 kb on + strand, within Psest_2317at 2469.224 kb on - strand, within Psest_2317at 2469.224 kb on - strand, within Psest_2317at 2469.224 kb on - strand, within Psest_2317at 2469.249 kb on + strand, within Psest_2317at 2469.249 kb on + strand, within Psest_2317at 2469.253 kb on + strand, within Psest_2317at 2469.253 kb on + strand, within Psest_2317at 2469.253 kb on + strand, within Psest_2317at 2469.253 kb on + strand, within Psest_2317at 2469.253 kb on + strand, within Psest_2317at 2469.253 kb on + strand, within Psest_2317at 2469.254 kb on - strand, within Psest_2317at 2469.254 kb on - strand, within Psest_2317at 2469.296 kb on + strand, within Psest_2317at 2469.453 kb on + strand, within Psest_2317at 2469.464 kb on + strand, within Psest_2317at 2469.464 kb on + strand, within Psest_2317at 2469.495 kb on + strand, within Psest_2317at 2469.495 kb on + strand, within Psest_2317at 2469.495 kb on + strand, within Psest_2317at 2469.495 kb on + strand, within Psest_2317at 2469.495 kb on + strand, within Psest_2317at 2469.495 kb on + strand, within Psest_2317at 2469.495 kb on + strand, within Psest_2317at 2469.496 kb on - strand, within Psest_2317at 2469.496 kb on - strand, within Psest_2317at 2469.496 kb on - strand, within Psest_2317at 2469.561 kb on + strand, within Psest_2317at 2469.561 kb on + strand, within Psest_2317at 2469.614 kb on + strand, within Psest_2317at 2469.615 kb on - strand, within Psest_2317at 2469.615 kb on - strand, within Psest_2317at 2469.624 kb on + strand, within Psest_2317at 2469.624 kb on + strand, within Psest_2317at 2469.624 kb on + strand, within Psest_2317at 2469.625 kb on - strand, within Psest_2317at 2469.660 kb on + strand, within Psest_2317at 2469.661 kb on - strand, within Psest_2317at 2469.717 kb on + strand, within Psest_2317at 2469.717 kb on + strand, within Psest_2317at 2469.717 kb on + strand, within Psest_2317at 2469.717 kb on + strand, within Psest_2317at 2469.718 kb on - strand, within Psest_2317at 2469.871 kb on - strand, within Psest_2317at 2469.952 kb on - strandat 2469.966 kb on + strandat 2470.013 kb on + strandat 2470.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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2,468,190 + Psest_2316 0.67 -1.1
2,468,190 + Psest_2316 0.67 -1.1
2,468,191 - Psest_2316 0.67 -4.7
2,468,271 + Psest_2316 0.70 -4.3
2,468,272 - Psest_2316 0.70 -3.0
2,468,966 + -4.4
2,468,966 + -1.3
2,468,967 - -4.2
2,468,967 - -2.6
2,468,967 - -3.3
2,468,967 - -3.9
2,468,967 - -1.7
2,468,967 - -2.9
2,468,967 - -2.7
2,468,971 - -2.4
2,468,971 - -3.8
2,468,971 - -3.1
2,468,971 - -2.3
2,468,971 - -2.3
2,468,971 - -2.1
2,468,971 - -5.1
2,468,975 + -3.4
2,468,975 + -3.4
2,468,975 + -2.7
2,468,976 - -1.1
2,468,997 + -4.1
2,468,998 - +0.4
2,468,998 - -1.3
2,468,998 - -0.5
2,468,998 - +0.1
2,468,998 - -0.4
2,468,998 - +0.5
2,468,998 - -2.9
2,468,998 - +0.7
2,469,055 - -0.0
2,469,055 - -1.1
2,469,055 - -0.9
2,469,058 + -2.3
2,469,093 + -4.3
2,469,093 + -3.5
2,469,097 - -2.9
2,469,097 - +0.2
2,469,099 - -0.0
2,469,099 - -1.4
2,469,223 + Psest_2317 0.11 -3.0
2,469,224 - Psest_2317 0.11 +0.2
2,469,224 - Psest_2317 0.11 -0.5
2,469,224 - Psest_2317 0.11 +1.2
2,469,249 + Psest_2317 0.14 -2.4
2,469,249 + Psest_2317 0.14 -3.2
2,469,253 + Psest_2317 0.14 -1.0
2,469,253 + Psest_2317 0.14 -2.4
2,469,253 + Psest_2317 0.14 -0.3
2,469,253 + Psest_2317 0.14 -3.0
2,469,253 + Psest_2317 0.14 -3.1
2,469,253 + Psest_2317 0.14 -4.1
2,469,254 - Psest_2317 0.15 +0.7
2,469,254 - Psest_2317 0.15 +0.3
2,469,296 + Psest_2317 0.20 -2.6
2,469,453 + Psest_2317 0.39 -1.7
2,469,464 + Psest_2317 0.40 -2.1
2,469,464 + Psest_2317 0.40 -2.5
2,469,495 + Psest_2317 0.44 -2.8
2,469,495 + Psest_2317 0.44 -0.2
2,469,495 + Psest_2317 0.44 -1.6
2,469,495 + Psest_2317 0.44 -1.7
2,469,495 + Psest_2317 0.44 -4.4
2,469,495 + Psest_2317 0.44 -0.1
2,469,495 + Psest_2317 0.44 -2.2
2,469,496 - Psest_2317 0.44 +0.1
2,469,496 - Psest_2317 0.44 +0.9
2,469,496 - Psest_2317 0.44 +1.4
2,469,561 + Psest_2317 0.52 -1.1
2,469,561 + Psest_2317 0.52 -2.6
2,469,614 + Psest_2317 0.58 -3.9
2,469,615 - Psest_2317 0.59 +0.7
2,469,615 - Psest_2317 0.59 -0.7
2,469,624 + Psest_2317 0.60 -1.4
2,469,624 + Psest_2317 0.60 -1.3
2,469,624 + Psest_2317 0.60 -0.8
2,469,625 - Psest_2317 0.60 +0.9
2,469,660 + Psest_2317 0.64 -2.0
2,469,661 - Psest_2317 0.64 -1.9
2,469,717 + Psest_2317 0.71 -1.0
2,469,717 + Psest_2317 0.71 -3.5
2,469,717 + Psest_2317 0.71 -0.8
2,469,717 + Psest_2317 0.71 +0.3
2,469,718 - Psest_2317 0.71 -0.6
2,469,871 - Psest_2317 0.90 +0.3
2,469,952 - +0.0
2,469,966 + -0.0
2,470,013 + -0.7
2,470,014 - +0.8

Or see this region's nucleotide sequence