Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2297

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2296 and Psest_2297 are separated by 362 nucleotidesPsest_2297 and Psest_2298 are separated by 150 nucleotidesPsest_2298 and Psest_2299 are separated by 51 nucleotidesPsest_2299 and Psest_2300 are separated by 32 nucleotidesPsest_2300 and Psest_2301 are separated by 273 nucleotides Psest_2296: Psest_2296 - Transcriptional regulators, at 2,447,895 to 2,448,611 _2296 Psest_2297: Psest_2297 - hypothetical protein, at 2,448,974 to 2,450,401 _2297 Psest_2298: Psest_2298 - tRNA_Leu_TAG, at 2,450,552 to 2,450,636 _2298 Psest_2299: Psest_2299 - tRNA_His_GTG, at 2,450,688 to 2,450,763 _2299 Psest_2300: Psest_2300 - tRNA_Arg_TCT, at 2,450,796 to 2,450,872 _2300 Psest_2301: Psest_2301 - 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase, at 2,451,146 to 2,452,000 _2301 Position (kb) 2448 2449 2450 2451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2448.022 kb on + strand, within Psest_2296at 2448.023 kb on - strand, within Psest_2296at 2448.043 kb on + strand, within Psest_2296at 2448.043 kb on + strand, within Psest_2296at 2448.043 kb on + strand, within Psest_2296at 2448.043 kb on + strand, within Psest_2296at 2448.044 kb on - strand, within Psest_2296at 2448.044 kb on - strand, within Psest_2296at 2448.044 kb on - strand, within Psest_2296at 2448.044 kb on - strand, within Psest_2296at 2448.044 kb on - strand, within Psest_2296at 2448.044 kb on - strand, within Psest_2296at 2448.044 kb on - strand, within Psest_2296at 2448.047 kb on + strand, within Psest_2296at 2448.047 kb on + strand, within Psest_2296at 2448.048 kb on - strand, within Psest_2296at 2448.048 kb on - strand, within Psest_2296at 2448.048 kb on - strand, within Psest_2296at 2448.048 kb on - strand, within Psest_2296at 2448.048 kb on - strand, within Psest_2296at 2448.048 kb on - strand, within Psest_2296at 2448.048 kb on - strand, within Psest_2296at 2448.118 kb on + strand, within Psest_2296at 2448.118 kb on + strand, within Psest_2296at 2448.118 kb on + strand, within Psest_2296at 2448.118 kb on + strand, within Psest_2296at 2448.118 kb on + strand, within Psest_2296at 2448.118 kb on + strand, within Psest_2296at 2448.119 kb on - strand, within Psest_2296at 2448.119 kb on - strand, within Psest_2296at 2448.119 kb on - strand, within Psest_2296at 2448.119 kb on - strand, within Psest_2296at 2448.119 kb on - strand, within Psest_2296at 2448.187 kb on - strand, within Psest_2296at 2448.187 kb on - strand, within Psest_2296at 2448.246 kb on + strand, within Psest_2296at 2448.247 kb on - strand, within Psest_2296at 2448.247 kb on - strand, within Psest_2296at 2448.598 kb on + strandat 2448.598 kb on + strandat 2448.598 kb on + strandat 2448.598 kb on + strandat 2448.598 kb on + strandat 2448.599 kb on - strandat 2448.612 kb on + strandat 2448.612 kb on + strandat 2448.612 kb on + strandat 2448.612 kb on + strandat 2448.612 kb on + strandat 2448.612 kb on + strandat 2448.613 kb on - strandat 2448.664 kb on + strandat 2448.665 kb on - strandat 2448.671 kb on + strandat 2448.671 kb on + strandat 2448.671 kb on + strandat 2448.671 kb on + strandat 2448.671 kb on + strandat 2448.671 kb on + strandat 2448.671 kb on + strandat 2448.671 kb on + strandat 2448.672 kb on - strandat 2448.672 kb on - strandat 2448.672 kb on - strandat 2448.672 kb on - strandat 2448.672 kb on - strandat 2448.672 kb on - strandat 2448.672 kb on - strandat 2448.702 kb on + strandat 2448.705 kb on + strandat 2448.706 kb on - strandat 2448.711 kb on + strandat 2448.711 kb on + strandat 2448.712 kb on - strandat 2448.712 kb on - strandat 2448.715 kb on + strandat 2448.715 kb on + strandat 2448.715 kb on + strandat 2448.716 kb on - strandat 2448.716 kb on - strandat 2448.843 kb on + strandat 2448.843 kb on + strandat 2448.844 kb on - strandat 2448.844 kb on - strandat 2448.844 kb on - strandat 2448.844 kb on - strandat 2448.844 kb on - strandat 2448.858 kb on + strandat 2448.858 kb on + strandat 2448.859 kb on - strandat 2448.859 kb on - strandat 2448.869 kb on - strandat 2448.869 kb on - strandat 2448.869 kb on - strandat 2448.914 kb on - strandat 2448.919 kb on + strandat 2448.919 kb on + strandat 2448.920 kb on - strandat 2448.920 kb on - strandat 2448.955 kb on + strandat 2448.955 kb on + strandat 2448.956 kb on - strandat 2449.022 kb on - strandat 2449.058 kb on + strandat 2449.058 kb on + strandat 2449.058 kb on + strandat 2449.059 kb on - strandat 2449.059 kb on - strandat 2449.059 kb on - strandat 2449.124 kb on - strand, within Psest_2297at 2449.229 kb on + strand, within Psest_2297at 2449.229 kb on + strand, within Psest_2297at 2449.229 kb on + strand, within Psest_2297at 2449.229 kb on + strand, within Psest_2297at 2449.229 kb on + strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.230 kb on - strand, within Psest_2297at 2449.395 kb on - strand, within Psest_2297at 2449.395 kb on - strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.415 kb on + strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.416 kb on - strand, within Psest_2297at 2449.470 kb on - strand, within Psest_2297at 2449.550 kb on + strand, within Psest_2297at 2449.551 kb on - strand, within Psest_2297at 2449.604 kb on + strand, within Psest_2297at 2449.605 kb on - strand, within Psest_2297at 2449.605 kb on - strand, within Psest_2297at 2449.721 kb on + strand, within Psest_2297at 2449.721 kb on + strand, within Psest_2297at 2449.721 kb on + strand, within Psest_2297at 2449.722 kb on - strand, within Psest_2297at 2449.722 kb on - strand, within Psest_2297at 2449.722 kb on - strand, within Psest_2297at 2449.722 kb on - strand, within Psest_2297at 2449.794 kb on - strand, within Psest_2297at 2449.794 kb on - strand, within Psest_2297at 2450.018 kb on + strand, within Psest_2297at 2450.018 kb on + strand, within Psest_2297at 2450.184 kb on + strand, within Psest_2297at 2450.185 kb on - strand, within Psest_2297at 2450.452 kb on + strandat 2450.453 kb on - strandat 2450.456 kb on + strandat 2450.456 kb on + strandat 2450.457 kb on - strandat 2450.457 kb on - strandat 2450.529 kb on + strandat 2450.530 kb on - strandat 2450.530 kb on - strandat 2450.876 kb on - strandat 2451.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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2,448,022 + Psest_2296 0.18 +0.5
2,448,023 - Psest_2296 0.18 +0.4
2,448,043 + Psest_2296 0.21 +0.1
2,448,043 + Psest_2296 0.21 +1.0
2,448,043 + Psest_2296 0.21 -1.7
2,448,043 + Psest_2296 0.21 -0.1
2,448,044 - Psest_2296 0.21 +0.9
2,448,044 - Psest_2296 0.21 +0.7
2,448,044 - Psest_2296 0.21 +0.3
2,448,044 - Psest_2296 0.21 +0.9
2,448,044 - Psest_2296 0.21 +1.6
2,448,044 - Psest_2296 0.21 +0.1
2,448,044 - Psest_2296 0.21 +1.5
2,448,047 + Psest_2296 0.21 -1.4
2,448,047 + Psest_2296 0.21 +1.2
2,448,048 - Psest_2296 0.21 +0.2
2,448,048 - Psest_2296 0.21 -0.1
2,448,048 - Psest_2296 0.21 +0.7
2,448,048 - Psest_2296 0.21 +0.3
2,448,048 - Psest_2296 0.21 -0.5
2,448,048 - Psest_2296 0.21 +0.5
2,448,048 - Psest_2296 0.21 -0.4
2,448,118 + Psest_2296 0.31 -0.1
2,448,118 + Psest_2296 0.31 +2.8
2,448,118 + Psest_2296 0.31 +0.2
2,448,118 + Psest_2296 0.31 +0.9
2,448,118 + Psest_2296 0.31 +1.4
2,448,118 + Psest_2296 0.31 +1.7
2,448,119 - Psest_2296 0.31 +0.1
2,448,119 - Psest_2296 0.31 +0.4
2,448,119 - Psest_2296 0.31 +1.6
2,448,119 - Psest_2296 0.31 +0.2
2,448,119 - Psest_2296 0.31 +0.9
2,448,187 - Psest_2296 0.41 +0.9
2,448,187 - Psest_2296 0.41 +0.2
2,448,246 + Psest_2296 0.49 +2.0
2,448,247 - Psest_2296 0.49 -0.1
2,448,247 - Psest_2296 0.49 +0.2
2,448,598 + -0.0
2,448,598 + +0.8
2,448,598 + +1.2
2,448,598 + +1.4
2,448,598 + +1.3
2,448,599 - -0.1
2,448,612 + +1.3
2,448,612 + +1.3
2,448,612 + +1.5
2,448,612 + +1.6
2,448,612 + +1.1
2,448,612 + +0.9
2,448,613 - -1.1
2,448,664 + +2.0
2,448,665 - -0.1
2,448,671 + +1.3
2,448,671 + +1.3
2,448,671 + +1.7
2,448,671 + +2.5
2,448,671 + -1.1
2,448,671 + +1.6
2,448,671 + +1.9
2,448,671 + +0.2
2,448,672 - +0.7
2,448,672 - -0.9
2,448,672 - +0.7
2,448,672 - -0.3
2,448,672 - +0.3
2,448,672 - +0.6
2,448,672 - +0.9
2,448,702 + +1.1
2,448,705 + +1.3
2,448,706 - -0.7
2,448,711 + +1.8
2,448,711 + +1.3
2,448,712 - -0.3
2,448,712 - +0.3
2,448,715 + +0.4
2,448,715 + +0.5
2,448,715 + +1.3
2,448,716 - +0.7
2,448,716 - +0.7
2,448,843 + +0.8
2,448,843 + +1.7
2,448,844 - +1.0
2,448,844 - +0.4
2,448,844 - +0.4
2,448,844 - +0.3
2,448,844 - +0.7
2,448,858 + -0.2
2,448,858 + +1.3
2,448,859 - +0.0
2,448,859 - -0.1
2,448,869 - +1.2
2,448,869 - -1.4
2,448,869 - +0.8
2,448,914 - +0.9
2,448,919 + +2.0
2,448,919 + +0.7
2,448,920 - +0.5
2,448,920 - +1.1
2,448,955 + +1.5
2,448,955 + +1.8
2,448,956 - +1.2
2,449,022 - -0.6
2,449,058 + -0.3
2,449,058 + -0.2
2,449,058 + -1.4
2,449,059 - +0.6
2,449,059 - -0.0
2,449,059 - -0.4
2,449,124 - Psest_2297 0.11 -0.3
2,449,229 + Psest_2297 0.18 -1.3
2,449,229 + Psest_2297 0.18 -1.1
2,449,229 + Psest_2297 0.18 -2.1
2,449,229 + Psest_2297 0.18 -1.1
2,449,229 + Psest_2297 0.18 +0.4
2,449,230 - Psest_2297 0.18 +0.2
2,449,230 - Psest_2297 0.18 -0.3
2,449,230 - Psest_2297 0.18 +0.1
2,449,230 - Psest_2297 0.18 -1.2
2,449,230 - Psest_2297 0.18 -1.1
2,449,230 - Psest_2297 0.18 -0.4
2,449,230 - Psest_2297 0.18 -1.2
2,449,230 - Psest_2297 0.18 -0.8
2,449,230 - Psest_2297 0.18 -0.1
2,449,230 - Psest_2297 0.18 +1.3
2,449,395 - Psest_2297 0.29 -0.8
2,449,395 - Psest_2297 0.29 +0.7
2,449,415 + Psest_2297 0.31 -0.9
2,449,415 + Psest_2297 0.31 -0.3
2,449,415 + Psest_2297 0.31 -1.0
2,449,415 + Psest_2297 0.31 +0.1
2,449,415 + Psest_2297 0.31 -0.2
2,449,415 + Psest_2297 0.31 -0.5
2,449,415 + Psest_2297 0.31 -1.0
2,449,415 + Psest_2297 0.31 -0.6
2,449,415 + Psest_2297 0.31 -2.3
2,449,415 + Psest_2297 0.31 +0.7
2,449,415 + Psest_2297 0.31 -0.5
2,449,415 + Psest_2297 0.31 -0.3
2,449,415 + Psest_2297 0.31 -0.3
2,449,415 + Psest_2297 0.31 -0.0
2,449,416 - Psest_2297 0.31 -1.1
2,449,416 - Psest_2297 0.31 -1.1
2,449,416 - Psest_2297 0.31 -1.1
2,449,416 - Psest_2297 0.31 -0.3
2,449,416 - Psest_2297 0.31 -0.5
2,449,416 - Psest_2297 0.31 -0.7
2,449,416 - Psest_2297 0.31 -0.6
2,449,416 - Psest_2297 0.31 -0.7
2,449,416 - Psest_2297 0.31 -0.7
2,449,416 - Psest_2297 0.31 -0.2
2,449,470 - Psest_2297 0.35 -0.6
2,449,550 + Psest_2297 0.40 -0.7
2,449,551 - Psest_2297 0.40 -1.4
2,449,604 + Psest_2297 0.44 -0.3
2,449,605 - Psest_2297 0.44 -0.5
2,449,605 - Psest_2297 0.44 -0.2
2,449,721 + Psest_2297 0.52 -0.3
2,449,721 + Psest_2297 0.52 +0.2
2,449,721 + Psest_2297 0.52 -0.8
2,449,722 - Psest_2297 0.52 -0.7
2,449,722 - Psest_2297 0.52 -0.7
2,449,722 - Psest_2297 0.52 -3.1
2,449,722 - Psest_2297 0.52 -1.4
2,449,794 - Psest_2297 0.57 -2.4
2,449,794 - Psest_2297 0.57 +0.6
2,450,018 + Psest_2297 0.73 -1.1
2,450,018 + Psest_2297 0.73 +0.3
2,450,184 + Psest_2297 0.85 -1.7
2,450,185 - Psest_2297 0.85 -0.6
2,450,452 + +1.5
2,450,453 - +1.1
2,450,456 + +1.0
2,450,456 + +0.8
2,450,457 - -0.0
2,450,457 - +0.4
2,450,529 + +0.4
2,450,530 - +0.1
2,450,530 - -0.2
2,450,876 - -0.6
2,451,037 + +1.0

Or see this region's nucleotide sequence