Strain Fitness in Marinobacter adhaerens HP15 around HP15_2175

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2174 and HP15_2175 are separated by 157 nucleotidesHP15_2175 and HP15_2176 are separated by 68 nucleotides HP15_2174: HP15_2174 - 6-phosphogluconate dehydratase, at 2,284,047 to 2,285,879 _2174 HP15_2175: HP15_2175 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,286,037 to 2,287,041 _2175 HP15_2176: HP15_2176 - pyruvate kinase II, at 2,287,110 to 2,288,558 _2176 Position (kb) 2286 2287 2288Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2285.039 kb on - strand, within HP15_2174at 2285.056 kb on + strand, within HP15_2174at 2285.109 kb on + strand, within HP15_2174at 2285.275 kb on + strand, within HP15_2174at 2285.324 kb on + strand, within HP15_2174at 2285.436 kb on - strand, within HP15_2174at 2285.522 kb on - strand, within HP15_2174at 2285.643 kb on + strand, within HP15_2174at 2285.740 kb on + strandat 2285.753 kb on - strandat 2285.762 kb on - strandat 2286.122 kb on + strandat 2286.147 kb on + strand, within HP15_2175at 2286.183 kb on + strand, within HP15_2175at 2286.330 kb on - strand, within HP15_2175at 2286.362 kb on - strand, within HP15_2175at 2286.372 kb on + strand, within HP15_2175at 2286.402 kb on - strand, within HP15_2175at 2286.402 kb on - strand, within HP15_2175at 2286.409 kb on - strand, within HP15_2175at 2286.421 kb on - strand, within HP15_2175at 2286.529 kb on + strand, within HP15_2175at 2286.529 kb on + strand, within HP15_2175at 2286.574 kb on + strand, within HP15_2175at 2286.610 kb on + strand, within HP15_2175at 2286.612 kb on + strand, within HP15_2175at 2286.625 kb on - strand, within HP15_2175at 2286.987 kb on - strandat 2287.023 kb on + strandat 2287.031 kb on - strandat 2287.031 kb on - strandat 2287.318 kb on + strand, within HP15_2176at 2287.371 kb on + strand, within HP15_2176at 2287.409 kb on + strand, within HP15_2176at 2287.451 kb on + strand, within HP15_2176at 2287.948 kb on - strand, within HP15_2176at 2287.968 kb on + strand, within HP15_2176

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
2,285,039 - HP15_2174 0.54 +0.6
2,285,056 + HP15_2174 0.55 +0.6
2,285,109 + HP15_2174 0.58 +1.7
2,285,275 + HP15_2174 0.67 +0.6
2,285,324 + HP15_2174 0.70 -1.2
2,285,436 - HP15_2174 0.76 +0.5
2,285,522 - HP15_2174 0.80 +2.3
2,285,643 + HP15_2174 0.87 -1.7
2,285,740 + +2.2
2,285,753 - +0.6
2,285,762 - +0.5
2,286,122 + +2.2
2,286,147 + HP15_2175 0.11 +1.7
2,286,183 + HP15_2175 0.15 +1.3
2,286,330 - HP15_2175 0.29 +1.2
2,286,362 - HP15_2175 0.32 +1.2
2,286,372 + HP15_2175 0.33 +2.1
2,286,402 - HP15_2175 0.36 +0.9
2,286,402 - HP15_2175 0.36 -0.0
2,286,409 - HP15_2175 0.37 +2.0
2,286,421 - HP15_2175 0.38 +2.2
2,286,529 + HP15_2175 0.49 +1.3
2,286,529 + HP15_2175 0.49 +0.2
2,286,574 + HP15_2175 0.53 +1.2
2,286,610 + HP15_2175 0.57 -2.7
2,286,612 + HP15_2175 0.57 +0.9
2,286,625 - HP15_2175 0.59 +1.5
2,286,987 - +2.4
2,287,023 + +0.1
2,287,031 - +1.6
2,287,031 - +1.8
2,287,318 + HP15_2176 0.14 +3.2
2,287,371 + HP15_2176 0.18 +2.4
2,287,409 + HP15_2176 0.21 +1.6
2,287,451 + HP15_2176 0.24 -0.7
2,287,948 - HP15_2176 0.58 +2.2
2,287,968 + HP15_2176 0.59 +2.6

Or see this region's nucleotide sequence