Strain Fitness in Marinobacter adhaerens HP15 around HP15_2103

Experiment: m.b. Benzethonium chloride 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2101 and HP15_2102 are separated by 11 nucleotidesHP15_2102 and HP15_2103 are separated by 86 nucleotidesHP15_2103 and HP15_2104 overlap by 4 nucleotides HP15_2101: HP15_2101 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 2,200,291 to 2,202,186 _2101 HP15_2102: HP15_2102 - SirA family protein, at 2,202,198 to 2,202,437 _2102 HP15_2103: HP15_2103 - antibiotic biosynthesis monooxygenase, at 2,202,524 to 2,202,814 _2103 HP15_2104: HP15_2104 - putative RNA 2'-O-ribose methyltransferase, at 2,202,811 to 2,203,887 _2104 Position (kb) 2202 2203Strain fitness (log2 ratio) -1 0 1at 2201.557 kb on - strand, within HP15_2101at 2201.891 kb on - strand, within HP15_2101at 2202.499 kb on - strandat 2202.572 kb on + strand, within HP15_2103at 2202.604 kb on - strand, within HP15_2103at 2202.672 kb on + strand, within HP15_2103at 2202.877 kb on - strandat 2202.993 kb on + strand, within HP15_2104at 2203.001 kb on - strand, within HP15_2104at 2203.002 kb on - strand, within HP15_2104at 2203.098 kb on - strand, within HP15_2104at 2203.122 kb on + strand, within HP15_2104at 2203.130 kb on - strand, within HP15_2104at 2203.256 kb on - strand, within HP15_2104at 2203.358 kb on + strand, within HP15_2104at 2203.431 kb on + strand, within HP15_2104at 2203.440 kb on - strand, within HP15_2104at 2203.461 kb on + strand, within HP15_2104at 2203.461 kb on + strand, within HP15_2104at 2203.466 kb on + strand, within HP15_2104at 2203.466 kb on + strand, within HP15_2104at 2203.474 kb on - strand, within HP15_2104at 2203.528 kb on + strand, within HP15_2104at 2203.537 kb on + strand, within HP15_2104at 2203.709 kb on - strand, within HP15_2104at 2203.709 kb on - strand, within HP15_2104at 2203.744 kb on - strand, within HP15_2104

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
remove
2,201,557 - HP15_2101 0.67 +0.8
2,201,891 - HP15_2101 0.84 +0.8
2,202,499 - -1.3
2,202,572 + HP15_2103 0.16 -0.6
2,202,604 - HP15_2103 0.27 -1.7
2,202,672 + HP15_2103 0.51 -0.3
2,202,877 - +0.4
2,202,993 + HP15_2104 0.17 +0.7
2,203,001 - HP15_2104 0.18 +0.0
2,203,002 - HP15_2104 0.18 +0.1
2,203,098 - HP15_2104 0.27 -0.3
2,203,122 + HP15_2104 0.29 +0.1
2,203,130 - HP15_2104 0.30 +0.1
2,203,256 - HP15_2104 0.41 +0.9
2,203,358 + HP15_2104 0.51 -0.2
2,203,431 + HP15_2104 0.58 -0.5
2,203,440 - HP15_2104 0.58 +0.9
2,203,461 + HP15_2104 0.60 +0.2
2,203,461 + HP15_2104 0.60 +1.1
2,203,466 + HP15_2104 0.61 +1.3
2,203,466 + HP15_2104 0.61 +0.3
2,203,474 - HP15_2104 0.62 +0.5
2,203,528 + HP15_2104 0.67 +0.7
2,203,537 + HP15_2104 0.67 +0.5
2,203,709 - HP15_2104 0.83 -0.5
2,203,709 - HP15_2104 0.83 -0.9
2,203,744 - HP15_2104 0.87 +1.3

Or see this region's nucleotide sequence