Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2038 and HP15_2039 are separated by 3 nucleotides HP15_2039 and HP15_2040 overlap by 8 nucleotides HP15_2040 and HP15_2041 are separated by 120 nucleotides HP15_2041 and HP15_2042 are separated by 30 nucleotides
HP15_2038: HP15_2038 - MotA/TolQ/ExbB proton channel, at 2,138,062 to 2,138,751
_2038
HP15_2039: HP15_2039 - 4-hydroxybenzoyl-CoA thioesterase, at 2,138,755 to 2,139,216
_2039
HP15_2040: HP15_2040 - Holliday junction ATP-dependent DNA helicase RuvB, at 2,139,209 to 2,140,252
_2040
HP15_2041: HP15_2041 - Holliday junction ATP-dependent DNA helicase RuvA, at 2,140,373 to 2,141,002
_2041
HP15_2042: HP15_2042 - crossover junction endodeoxyribonuclease RuvC, at 2,141,033 to 2,141,560
_2042
Position (kb)
2139
2140
2141 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2138.796 kb on - strand at 2138.833 kb on + strand, within HP15_2039 at 2138.904 kb on + strand, within HP15_2039 at 2138.935 kb on + strand, within HP15_2039 at 2138.971 kb on + strand, within HP15_2039 at 2139.030 kb on + strand, within HP15_2039 at 2139.149 kb on + strand, within HP15_2039 at 2140.344 kb on + strand at 2140.344 kb on + strand at 2141.021 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 2,138,796 - -0.5 2,138,833 + HP15_2039 0.17 -1.9 2,138,904 + HP15_2039 0.32 +0.2 2,138,935 + HP15_2039 0.39 -1.7 2,138,971 + HP15_2039 0.47 -1.1 2,139,030 + HP15_2039 0.60 +1.8 2,139,149 + HP15_2039 0.85 +0.2 2,140,344 + +0.0 2,140,344 + -0.3 2,141,021 + -0.5
Or see this region's nucleotide sequence