Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1882 and HP15_1883 are separated by 31 nucleotides HP15_1883 and HP15_1884 are separated by 31 nucleotides HP15_1884 and HP15_1885 are separated by 3 nucleotides
HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433
_1882
HP15_1883: HP15_1883 - recombination protein RecR, at 1,987,465 to 1,988,067
_1883
HP15_1884: HP15_1884 - protein belonging to uncharacterized protein family UPF0133, at 1,988,099 to 1,988,422
_1884
HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378
_1885
Position (kb)
1987
1988
1989 Strain fitness (log2 ratio)
-1
0
1 at 1986.492 kb on - strand, within HP15_1882 at 1986.550 kb on + strand, within HP15_1882 at 1986.560 kb on + strand, within HP15_1882 at 1986.737 kb on - strand, within HP15_1882 at 1986.878 kb on + strand, within HP15_1882 at 1986.878 kb on + strand, within HP15_1882 at 1986.946 kb on + strand, within HP15_1882 at 1987.051 kb on + strand, within HP15_1882 at 1987.130 kb on + strand, within HP15_1882 at 1987.138 kb on - strand, within HP15_1882 at 1987.162 kb on - strand, within HP15_1882 at 1987.352 kb on - strand at 1987.352 kb on - strand at 1987.606 kb on - strand, within HP15_1883 at 1988.098 kb on - strand at 1988.136 kb on - strand, within HP15_1884
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,986,492 - HP15_1882 0.19 +0.7 1,986,550 + HP15_1882 0.24 -1.0 1,986,560 + HP15_1882 0.25 +0.5 1,986,737 - HP15_1882 0.40 -0.4 1,986,878 + HP15_1882 0.52 +0.3 1,986,878 + HP15_1882 0.52 -1.1 1,986,946 + HP15_1882 0.58 -0.0 1,987,051 + HP15_1882 0.67 +0.7 1,987,130 + HP15_1882 0.74 -0.1 1,987,138 - HP15_1882 0.74 -0.8 1,987,162 - HP15_1882 0.77 +0.3 1,987,352 - -0.8 1,987,352 - +0.0 1,987,606 - HP15_1883 0.23 +0.8 1,988,098 - -0.2 1,988,136 - HP15_1884 0.11 -1.0
Or see this region's nucleotide sequence