Experiment: Adenine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1663 and Psest_1664 are separated by 146 nucleotides Psest_1664 and Psest_1665 overlap by 4 nucleotides Psest_1665 and Psest_1666 are separated by 3 nucleotides Psest_1666 and Psest_1667 are separated by 32 nucleotides
Psest_1663: Psest_1663 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 1,772,154 to 1,773,548
_1663
Psest_1664: Psest_1664 - Glycerophosphoryl diester phosphodiesterase, at 1,773,695 to 1,774,417
_1664
Psest_1665: Psest_1665 - hypothetical protein, at 1,774,414 to 1,774,722
_1665
Psest_1666: Psest_1666 - PilZ domain., at 1,774,726 to 1,775,361
_1666
Psest_1667: Psest_1667 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,775,394 to 1,776,641
_1667
Position (kb)
1773
1774
1775 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1772.824 kb on - strand, within Psest_1663 at 1773.045 kb on + strand, within Psest_1663 at 1773.069 kb on + strand, within Psest_1663 at 1773.117 kb on + strand, within Psest_1663 at 1773.198 kb on + strand, within Psest_1663 at 1773.198 kb on + strand, within Psest_1663 at 1773.198 kb on + strand, within Psest_1663 at 1773.199 kb on - strand, within Psest_1663 at 1773.462 kb on + strand at 1773.637 kb on + strand at 1773.637 kb on + strand at 1773.878 kb on + strand, within Psest_1664 at 1773.879 kb on - strand, within Psest_1664 at 1773.879 kb on - strand, within Psest_1664 at 1773.927 kb on + strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.928 kb on - strand, within Psest_1664 at 1773.950 kb on + strand, within Psest_1664 at 1773.950 kb on + strand, within Psest_1664 at 1773.951 kb on - strand, within Psest_1664 at 1774.133 kb on + strand, within Psest_1664 at 1774.134 kb on - strand, within Psest_1664 at 1774.197 kb on + strand, within Psest_1664 at 1774.198 kb on - strand, within Psest_1664 at 1774.198 kb on - strand, within Psest_1664 at 1774.198 kb on - strand, within Psest_1664 at 1774.328 kb on + strand, within Psest_1664 at 1774.329 kb on - strand, within Psest_1664 at 1774.329 kb on - strand, within Psest_1664 at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.404 kb on + strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.405 kb on - strand at 1774.423 kb on + strand at 1774.424 kb on - strand at 1774.449 kb on + strand, within Psest_1665 at 1774.449 kb on + strand, within Psest_1665 at 1774.449 kb on + strand, within Psest_1665 at 1774.450 kb on - strand, within Psest_1665 at 1774.450 kb on - strand, within Psest_1665 at 1774.496 kb on + strand, within Psest_1665 at 1774.496 kb on + strand, within Psest_1665 at 1774.496 kb on + strand, within Psest_1665 at 1774.702 kb on + strand at 1774.702 kb on + strand at 1774.703 kb on - strand at 1774.703 kb on - strand at 1774.785 kb on + strand at 1774.847 kb on + strand, within Psest_1666 at 1774.848 kb on - strand, within Psest_1666 at 1774.848 kb on - strand, within Psest_1666 at 1774.848 kb on - strand, within Psest_1666 at 1774.874 kb on + strand, within Psest_1666 at 1774.874 kb on + strand, within Psest_1666 at 1774.874 kb on + strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.875 kb on - strand, within Psest_1666 at 1774.916 kb on - strand, within Psest_1666 at 1774.935 kb on + strand, within Psest_1666 at 1774.936 kb on - strand, within Psest_1666 at 1774.936 kb on - strand, within Psest_1666 at 1775.088 kb on - strand, within Psest_1666 at 1775.088 kb on - strand, within Psest_1666 at 1775.261 kb on + strand, within Psest_1666 at 1775.261 kb on + strand, within Psest_1666 at 1775.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine (N) remove 1,772,824 - Psest_1663 0.48 +1.1 1,773,045 + Psest_1663 0.64 +2.0 1,773,069 + Psest_1663 0.66 +1.2 1,773,117 + Psest_1663 0.69 +0.9 1,773,198 + Psest_1663 0.75 +0.9 1,773,198 + Psest_1663 0.75 -0.7 1,773,198 + Psest_1663 0.75 +0.2 1,773,199 - Psest_1663 0.75 +1.0 1,773,462 + -0.7 1,773,637 + -0.6 1,773,637 + -0.2 1,773,878 + Psest_1664 0.25 -1.2 1,773,879 - Psest_1664 0.25 +0.2 1,773,879 - Psest_1664 0.25 -0.7 1,773,927 + Psest_1664 0.32 -0.5 1,773,928 - Psest_1664 0.32 -2.0 1,773,928 - Psest_1664 0.32 -0.6 1,773,928 - Psest_1664 0.32 -1.0 1,773,928 - Psest_1664 0.32 -1.2 1,773,950 + Psest_1664 0.35 -0.0 1,773,950 + Psest_1664 0.35 -1.0 1,773,951 - Psest_1664 0.35 -1.7 1,774,133 + Psest_1664 0.61 -0.2 1,774,134 - Psest_1664 0.61 +0.1 1,774,197 + Psest_1664 0.69 +0.5 1,774,198 - Psest_1664 0.70 -1.5 1,774,198 - Psest_1664 0.70 -1.1 1,774,198 - Psest_1664 0.70 -1.5 1,774,328 + Psest_1664 0.88 -1.2 1,774,329 - Psest_1664 0.88 -1.1 1,774,329 - Psest_1664 0.88 -0.1 1,774,404 + -2.8 1,774,404 + +0.5 1,774,404 + +0.9 1,774,404 + -0.9 1,774,404 + +0.0 1,774,404 + -2.7 1,774,404 + -0.6 1,774,404 + -1.5 1,774,405 - +0.4 1,774,405 - -1.2 1,774,405 - -1.6 1,774,405 - -1.3 1,774,405 - -2.3 1,774,423 + -1.9 1,774,424 - -0.5 1,774,449 + Psest_1665 0.11 +0.9 1,774,449 + Psest_1665 0.11 -1.1 1,774,449 + Psest_1665 0.11 +0.3 1,774,450 - Psest_1665 0.12 -0.3 1,774,450 - Psest_1665 0.12 -0.4 1,774,496 + Psest_1665 0.27 -1.7 1,774,496 + Psest_1665 0.27 -0.0 1,774,496 + Psest_1665 0.27 +0.0 1,774,702 + +0.5 1,774,702 + -0.2 1,774,703 - -0.7 1,774,703 - -0.0 1,774,785 + -1.2 1,774,847 + Psest_1666 0.19 +1.3 1,774,848 - Psest_1666 0.19 -1.0 1,774,848 - Psest_1666 0.19 +0.8 1,774,848 - Psest_1666 0.19 -0.4 1,774,874 + Psest_1666 0.23 +0.0 1,774,874 + Psest_1666 0.23 -0.7 1,774,874 + Psest_1666 0.23 +0.1 1,774,875 - Psest_1666 0.23 -0.3 1,774,875 - Psest_1666 0.23 +0.0 1,774,875 - Psest_1666 0.23 -1.0 1,774,875 - Psest_1666 0.23 +0.7 1,774,916 - Psest_1666 0.30 +1.3 1,774,935 + Psest_1666 0.33 +0.2 1,774,936 - Psest_1666 0.33 +0.2 1,774,936 - Psest_1666 0.33 -0.5 1,775,088 - Psest_1666 0.57 +1.0 1,775,088 - Psest_1666 0.57 -0.5 1,775,261 + Psest_1666 0.84 -0.7 1,775,261 + Psest_1666 0.84 -1.4 1,775,332 + +0.4
Or see this region's nucleotide sequence