Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1664

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1663 and Psest_1664 are separated by 146 nucleotidesPsest_1664 and Psest_1665 overlap by 4 nucleotidesPsest_1665 and Psest_1666 are separated by 3 nucleotidesPsest_1666 and Psest_1667 are separated by 32 nucleotides Psest_1663: Psest_1663 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes, at 1,772,154 to 1,773,548 _1663 Psest_1664: Psest_1664 - Glycerophosphoryl diester phosphodiesterase, at 1,773,695 to 1,774,417 _1664 Psest_1665: Psest_1665 - hypothetical protein, at 1,774,414 to 1,774,722 _1665 Psest_1666: Psest_1666 - PilZ domain., at 1,774,726 to 1,775,361 _1666 Psest_1667: Psest_1667 - lipoprotein releasing system, transmembrane protein, LolC/E family, at 1,775,394 to 1,776,641 _1667 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1772.824 kb on - strand, within Psest_1663at 1773.045 kb on + strand, within Psest_1663at 1773.069 kb on + strand, within Psest_1663at 1773.117 kb on + strand, within Psest_1663at 1773.198 kb on + strand, within Psest_1663at 1773.198 kb on + strand, within Psest_1663at 1773.198 kb on + strand, within Psest_1663at 1773.199 kb on - strand, within Psest_1663at 1773.462 kb on + strandat 1773.637 kb on + strandat 1773.637 kb on + strandat 1773.878 kb on + strand, within Psest_1664at 1773.879 kb on - strand, within Psest_1664at 1773.879 kb on - strand, within Psest_1664at 1773.927 kb on + strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.928 kb on - strand, within Psest_1664at 1773.950 kb on + strand, within Psest_1664at 1773.950 kb on + strand, within Psest_1664at 1773.951 kb on - strand, within Psest_1664at 1774.133 kb on + strand, within Psest_1664at 1774.134 kb on - strand, within Psest_1664at 1774.197 kb on + strand, within Psest_1664at 1774.198 kb on - strand, within Psest_1664at 1774.198 kb on - strand, within Psest_1664at 1774.198 kb on - strand, within Psest_1664at 1774.328 kb on + strand, within Psest_1664at 1774.329 kb on - strand, within Psest_1664at 1774.329 kb on - strand, within Psest_1664at 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.404 kb on + strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.405 kb on - strandat 1774.423 kb on + strandat 1774.424 kb on - strandat 1774.449 kb on + strand, within Psest_1665at 1774.449 kb on + strand, within Psest_1665at 1774.449 kb on + strand, within Psest_1665at 1774.450 kb on - strand, within Psest_1665at 1774.450 kb on - strand, within Psest_1665at 1774.496 kb on + strand, within Psest_1665at 1774.496 kb on + strand, within Psest_1665at 1774.496 kb on + strand, within Psest_1665at 1774.702 kb on + strandat 1774.702 kb on + strandat 1774.703 kb on - strandat 1774.703 kb on - strandat 1774.785 kb on + strandat 1774.847 kb on + strand, within Psest_1666at 1774.848 kb on - strand, within Psest_1666at 1774.848 kb on - strand, within Psest_1666at 1774.848 kb on - strand, within Psest_1666at 1774.874 kb on + strand, within Psest_1666at 1774.874 kb on + strand, within Psest_1666at 1774.874 kb on + strand, within Psest_1666at 1774.875 kb on - strand, within Psest_1666at 1774.875 kb on - strand, within Psest_1666at 1774.875 kb on - strand, within Psest_1666at 1774.875 kb on - strand, within Psest_1666at 1774.916 kb on - strand, within Psest_1666at 1774.935 kb on + strand, within Psest_1666at 1774.936 kb on - strand, within Psest_1666at 1774.936 kb on - strand, within Psest_1666at 1775.088 kb on - strand, within Psest_1666at 1775.088 kb on - strand, within Psest_1666at 1775.261 kb on + strand, within Psest_1666at 1775.261 kb on + strand, within Psest_1666at 1775.332 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,772,824 - Psest_1663 0.48 +1.1
1,773,045 + Psest_1663 0.64 +2.0
1,773,069 + Psest_1663 0.66 +1.2
1,773,117 + Psest_1663 0.69 +0.9
1,773,198 + Psest_1663 0.75 +0.9
1,773,198 + Psest_1663 0.75 -0.7
1,773,198 + Psest_1663 0.75 +0.2
1,773,199 - Psest_1663 0.75 +1.0
1,773,462 + -0.7
1,773,637 + -0.6
1,773,637 + -0.2
1,773,878 + Psest_1664 0.25 -1.2
1,773,879 - Psest_1664 0.25 +0.2
1,773,879 - Psest_1664 0.25 -0.7
1,773,927 + Psest_1664 0.32 -0.5
1,773,928 - Psest_1664 0.32 -2.0
1,773,928 - Psest_1664 0.32 -0.6
1,773,928 - Psest_1664 0.32 -1.0
1,773,928 - Psest_1664 0.32 -1.2
1,773,950 + Psest_1664 0.35 -0.0
1,773,950 + Psest_1664 0.35 -1.0
1,773,951 - Psest_1664 0.35 -1.7
1,774,133 + Psest_1664 0.61 -0.2
1,774,134 - Psest_1664 0.61 +0.1
1,774,197 + Psest_1664 0.69 +0.5
1,774,198 - Psest_1664 0.70 -1.5
1,774,198 - Psest_1664 0.70 -1.1
1,774,198 - Psest_1664 0.70 -1.5
1,774,328 + Psest_1664 0.88 -1.2
1,774,329 - Psest_1664 0.88 -1.1
1,774,329 - Psest_1664 0.88 -0.1
1,774,404 + -2.8
1,774,404 + +0.5
1,774,404 + +0.9
1,774,404 + -0.9
1,774,404 + +0.0
1,774,404 + -2.7
1,774,404 + -0.6
1,774,404 + -1.5
1,774,405 - +0.4
1,774,405 - -1.2
1,774,405 - -1.6
1,774,405 - -1.3
1,774,405 - -2.3
1,774,423 + -1.9
1,774,424 - -0.5
1,774,449 + Psest_1665 0.11 +0.9
1,774,449 + Psest_1665 0.11 -1.1
1,774,449 + Psest_1665 0.11 +0.3
1,774,450 - Psest_1665 0.12 -0.3
1,774,450 - Psest_1665 0.12 -0.4
1,774,496 + Psest_1665 0.27 -1.7
1,774,496 + Psest_1665 0.27 -0.0
1,774,496 + Psest_1665 0.27 +0.0
1,774,702 + +0.5
1,774,702 + -0.2
1,774,703 - -0.7
1,774,703 - -0.0
1,774,785 + -1.2
1,774,847 + Psest_1666 0.19 +1.3
1,774,848 - Psest_1666 0.19 -1.0
1,774,848 - Psest_1666 0.19 +0.8
1,774,848 - Psest_1666 0.19 -0.4
1,774,874 + Psest_1666 0.23 +0.0
1,774,874 + Psest_1666 0.23 -0.7
1,774,874 + Psest_1666 0.23 +0.1
1,774,875 - Psest_1666 0.23 -0.3
1,774,875 - Psest_1666 0.23 +0.0
1,774,875 - Psest_1666 0.23 -1.0
1,774,875 - Psest_1666 0.23 +0.7
1,774,916 - Psest_1666 0.30 +1.3
1,774,935 + Psest_1666 0.33 +0.2
1,774,936 - Psest_1666 0.33 +0.2
1,774,936 - Psest_1666 0.33 -0.5
1,775,088 - Psest_1666 0.57 +1.0
1,775,088 - Psest_1666 0.57 -0.5
1,775,261 + Psest_1666 0.84 -0.7
1,775,261 + Psest_1666 0.84 -1.4
1,775,332 + +0.4

Or see this region's nucleotide sequence