Strain Fitness in Marinobacter adhaerens HP15 around HP15_1582

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1581 and HP15_1582 overlap by 20 nucleotidesHP15_1582 and HP15_1583 are separated by 186 nucleotides HP15_1581: HP15_1581 - protein containing DUF262, at 1,668,437 to 1,670,443 _1581 HP15_1582: HP15_1582 - type III restriction enzyme, res subunit, at 1,670,424 to 1,673,453 _1582 HP15_1583: HP15_1583 - conserved hypothetical protein, at 1,673,640 to 1,674,194 _1583 Position (kb) 1670 1671 1672 1673 1674Strain fitness (log2 ratio) -3 -2 -1 0 1at 1669.476 kb on - strand, within HP15_1581at 1669.533 kb on + strand, within HP15_1581at 1669.698 kb on - strand, within HP15_1581at 1669.723 kb on + strand, within HP15_1581at 1669.723 kb on + strand, within HP15_1581at 1669.731 kb on - strand, within HP15_1581at 1669.947 kb on - strand, within HP15_1581at 1669.970 kb on + strand, within HP15_1581at 1669.978 kb on - strand, within HP15_1581at 1670.030 kb on - strand, within HP15_1581at 1670.344 kb on - strandat 1670.377 kb on + strandat 1670.382 kb on + strandat 1670.415 kb on + strandat 1670.489 kb on - strandat 1670.607 kb on - strandat 1670.652 kb on - strandat 1670.657 kb on - strandat 1670.705 kb on - strandat 1670.858 kb on - strand, within HP15_1582at 1670.860 kb on + strand, within HP15_1582at 1670.913 kb on + strand, within HP15_1582at 1670.952 kb on - strand, within HP15_1582at 1671.000 kb on - strand, within HP15_1582at 1671.052 kb on + strand, within HP15_1582at 1671.149 kb on - strand, within HP15_1582at 1671.238 kb on - strand, within HP15_1582at 1671.305 kb on - strand, within HP15_1582at 1671.621 kb on - strand, within HP15_1582at 1671.626 kb on - strand, within HP15_1582at 1671.813 kb on + strand, within HP15_1582at 1671.899 kb on + strand, within HP15_1582at 1671.964 kb on - strand, within HP15_1582at 1672.111 kb on - strand, within HP15_1582at 1672.111 kb on - strand, within HP15_1582at 1672.118 kb on - strand, within HP15_1582at 1672.207 kb on - strand, within HP15_1582at 1672.211 kb on + strand, within HP15_1582at 1672.213 kb on - strand, within HP15_1582at 1672.224 kb on + strand, within HP15_1582at 1672.227 kb on - strand, within HP15_1582at 1672.407 kb on + strand, within HP15_1582at 1672.450 kb on + strand, within HP15_1582at 1672.466 kb on + strand, within HP15_1582at 1672.512 kb on + strand, within HP15_1582at 1672.527 kb on + strand, within HP15_1582at 1672.535 kb on - strand, within HP15_1582at 1672.551 kb on - strand, within HP15_1582at 1672.628 kb on + strand, within HP15_1582at 1672.682 kb on + strand, within HP15_1582at 1672.705 kb on - strand, within HP15_1582at 1672.909 kb on - strand, within HP15_1582at 1672.945 kb on - strand, within HP15_1582at 1672.982 kb on + strand, within HP15_1582at 1673.015 kb on - strand, within HP15_1582at 1673.083 kb on - strand, within HP15_1582at 1673.164 kb on - strandat 1673.181 kb on - strandat 1673.181 kb on - strandat 1673.181 kb on - strandat 1673.203 kb on - strandat 1673.308 kb on + strandat 1673.359 kb on + strandat 1673.405 kb on + strandat 1673.405 kb on + strandat 1673.405 kb on + strandat 1673.508 kb on + strandat 1673.513 kb on + strandat 1673.542 kb on + strandat 1673.557 kb on - strandat 1673.605 kb on - strandat 1673.621 kb on - strandat 1673.819 kb on + strand, within HP15_1583at 1673.829 kb on + strand, within HP15_1583at 1673.837 kb on - strand, within HP15_1583at 1673.839 kb on - strand, within HP15_1583at 1673.928 kb on + strand, within HP15_1583at 1674.021 kb on - strand, within HP15_1583at 1674.023 kb on + strand, within HP15_1583at 1674.090 kb on - strand, within HP15_1583at 1674.153 kb on + strandat 1674.241 kb on - strandat 1674.252 kb on + strandat 1674.289 kb on + strandat 1674.297 kb on - strandat 1674.328 kb on + strandat 1674.361 kb on - strandat 1674.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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1,669,476 - HP15_1581 0.52 -0.0
1,669,533 + HP15_1581 0.55 -0.5
1,669,698 - HP15_1581 0.63 +0.4
1,669,723 + HP15_1581 0.64 +0.4
1,669,723 + HP15_1581 0.64 +0.4
1,669,731 - HP15_1581 0.64 +0.1
1,669,947 - HP15_1581 0.75 -0.4
1,669,970 + HP15_1581 0.76 -0.2
1,669,978 - HP15_1581 0.77 -0.4
1,670,030 - HP15_1581 0.79 -0.1
1,670,344 - -1.1
1,670,377 + -0.3
1,670,382 + +1.4
1,670,415 + +0.6
1,670,489 - -2.3
1,670,607 - -0.2
1,670,652 - -1.5
1,670,657 - +1.0
1,670,705 - +0.2
1,670,858 - HP15_1582 0.14 +0.2
1,670,860 + HP15_1582 0.14 -0.2
1,670,913 + HP15_1582 0.16 +0.1
1,670,952 - HP15_1582 0.17 -2.0
1,671,000 - HP15_1582 0.19 -2.6
1,671,052 + HP15_1582 0.21 +0.3
1,671,149 - HP15_1582 0.24 +0.2
1,671,238 - HP15_1582 0.27 +0.8
1,671,305 - HP15_1582 0.29 +0.5
1,671,621 - HP15_1582 0.40 +0.6
1,671,626 - HP15_1582 0.40 -0.5
1,671,813 + HP15_1582 0.46 +0.0
1,671,899 + HP15_1582 0.49 -1.7
1,671,964 - HP15_1582 0.51 -2.5
1,672,111 - HP15_1582 0.56 +0.6
1,672,111 - HP15_1582 0.56 +0.9
1,672,118 - HP15_1582 0.56 -0.6
1,672,207 - HP15_1582 0.59 +0.7
1,672,211 + HP15_1582 0.59 +0.1
1,672,213 - HP15_1582 0.59 +0.5
1,672,224 + HP15_1582 0.59 -0.0
1,672,227 - HP15_1582 0.60 +0.1
1,672,407 + HP15_1582 0.65 -2.8
1,672,450 + HP15_1582 0.67 +0.0
1,672,466 + HP15_1582 0.67 +0.6
1,672,512 + HP15_1582 0.69 +0.1
1,672,527 + HP15_1582 0.69 +0.2
1,672,535 - HP15_1582 0.70 +0.1
1,672,551 - HP15_1582 0.70 -2.8
1,672,628 + HP15_1582 0.73 -2.1
1,672,682 + HP15_1582 0.75 -1.5
1,672,705 - HP15_1582 0.75 -1.4
1,672,909 - HP15_1582 0.82 -0.2
1,672,945 - HP15_1582 0.83 +0.1
1,672,982 + HP15_1582 0.84 -2.4
1,673,015 - HP15_1582 0.86 +0.1
1,673,083 - HP15_1582 0.88 -0.8
1,673,164 - +1.0
1,673,181 - +0.8
1,673,181 - -0.9
1,673,181 - +0.4
1,673,203 - +0.3
1,673,308 + -1.4
1,673,359 + +0.5
1,673,405 + -0.1
1,673,405 + -0.1
1,673,405 + +0.1
1,673,508 + +0.6
1,673,513 + +0.8
1,673,542 + -0.6
1,673,557 - +0.0
1,673,605 - -0.4
1,673,621 - +0.1
1,673,819 + HP15_1583 0.32 -0.5
1,673,829 + HP15_1583 0.34 +0.4
1,673,837 - HP15_1583 0.35 +1.1
1,673,839 - HP15_1583 0.36 -0.8
1,673,928 + HP15_1583 0.52 -0.1
1,674,021 - HP15_1583 0.69 +0.0
1,674,023 + HP15_1583 0.69 -0.2
1,674,090 - HP15_1583 0.81 -0.9
1,674,153 + -0.1
1,674,241 - +0.7
1,674,252 + +1.0
1,674,289 + -0.9
1,674,297 - -0.3
1,674,328 + +0.6
1,674,361 - +0.3
1,674,371 - +0.1

Or see this region's nucleotide sequence