Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1581 and HP15_1582 overlap by 20 nucleotides HP15_1582 and HP15_1583 are separated by 186 nucleotides
HP15_1581: HP15_1581 - protein containing DUF262, at 1,668,437 to 1,670,443
_1581
HP15_1582: HP15_1582 - type III restriction enzyme, res subunit, at 1,670,424 to 1,673,453
_1582
HP15_1583: HP15_1583 - conserved hypothetical protein, at 1,673,640 to 1,674,194
_1583
Position (kb)
1670
1671
1672
1673
1674 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1669.476 kb on - strand, within HP15_1581 at 1669.533 kb on + strand, within HP15_1581 at 1669.698 kb on - strand, within HP15_1581 at 1669.723 kb on + strand, within HP15_1581 at 1669.723 kb on + strand, within HP15_1581 at 1669.731 kb on - strand, within HP15_1581 at 1669.947 kb on - strand, within HP15_1581 at 1669.970 kb on + strand, within HP15_1581 at 1669.978 kb on - strand, within HP15_1581 at 1670.030 kb on - strand, within HP15_1581 at 1670.344 kb on - strand at 1670.377 kb on + strand at 1670.382 kb on + strand at 1670.415 kb on + strand at 1670.489 kb on - strand at 1670.607 kb on - strand at 1670.652 kb on - strand at 1670.657 kb on - strand at 1670.705 kb on - strand at 1670.858 kb on - strand, within HP15_1582 at 1670.860 kb on + strand, within HP15_1582 at 1670.913 kb on + strand, within HP15_1582 at 1670.952 kb on - strand, within HP15_1582 at 1671.000 kb on - strand, within HP15_1582 at 1671.052 kb on + strand, within HP15_1582 at 1671.149 kb on - strand, within HP15_1582 at 1671.238 kb on - strand, within HP15_1582 at 1671.305 kb on - strand, within HP15_1582 at 1671.621 kb on - strand, within HP15_1582 at 1671.626 kb on - strand, within HP15_1582 at 1671.813 kb on + strand, within HP15_1582 at 1671.899 kb on + strand, within HP15_1582 at 1671.964 kb on - strand, within HP15_1582 at 1672.111 kb on - strand, within HP15_1582 at 1672.111 kb on - strand, within HP15_1582 at 1672.118 kb on - strand, within HP15_1582 at 1672.207 kb on - strand, within HP15_1582 at 1672.211 kb on + strand, within HP15_1582 at 1672.213 kb on - strand, within HP15_1582 at 1672.224 kb on + strand, within HP15_1582 at 1672.227 kb on - strand, within HP15_1582 at 1672.407 kb on + strand, within HP15_1582 at 1672.450 kb on + strand, within HP15_1582 at 1672.466 kb on + strand, within HP15_1582 at 1672.512 kb on + strand, within HP15_1582 at 1672.527 kb on + strand, within HP15_1582 at 1672.535 kb on - strand, within HP15_1582 at 1672.551 kb on - strand, within HP15_1582 at 1672.628 kb on + strand, within HP15_1582 at 1672.682 kb on + strand, within HP15_1582 at 1672.705 kb on - strand, within HP15_1582 at 1672.909 kb on - strand, within HP15_1582 at 1672.945 kb on - strand, within HP15_1582 at 1672.982 kb on + strand, within HP15_1582 at 1673.015 kb on - strand, within HP15_1582 at 1673.083 kb on - strand, within HP15_1582 at 1673.164 kb on - strand at 1673.181 kb on - strand at 1673.181 kb on - strand at 1673.181 kb on - strand at 1673.203 kb on - strand at 1673.308 kb on + strand at 1673.359 kb on + strand at 1673.405 kb on + strand at 1673.405 kb on + strand at 1673.405 kb on + strand at 1673.508 kb on + strand at 1673.513 kb on + strand at 1673.542 kb on + strand at 1673.557 kb on - strand at 1673.605 kb on - strand at 1673.621 kb on - strand at 1673.819 kb on + strand, within HP15_1583 at 1673.829 kb on + strand, within HP15_1583 at 1673.837 kb on - strand, within HP15_1583 at 1673.839 kb on - strand, within HP15_1583 at 1673.928 kb on + strand, within HP15_1583 at 1674.021 kb on - strand, within HP15_1583 at 1674.023 kb on + strand, within HP15_1583 at 1674.090 kb on - strand, within HP15_1583 at 1674.153 kb on + strand at 1674.241 kb on - strand at 1674.252 kb on + strand at 1674.289 kb on + strand at 1674.297 kb on - strand at 1674.328 kb on + strand at 1674.361 kb on - strand at 1674.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 1,669,476 - HP15_1581 0.52 -0.0 1,669,533 + HP15_1581 0.55 -0.5 1,669,698 - HP15_1581 0.63 +0.4 1,669,723 + HP15_1581 0.64 +0.4 1,669,723 + HP15_1581 0.64 +0.4 1,669,731 - HP15_1581 0.64 +0.1 1,669,947 - HP15_1581 0.75 -0.4 1,669,970 + HP15_1581 0.76 -0.2 1,669,978 - HP15_1581 0.77 -0.4 1,670,030 - HP15_1581 0.79 -0.1 1,670,344 - -1.1 1,670,377 + -0.3 1,670,382 + +1.4 1,670,415 + +0.6 1,670,489 - -2.3 1,670,607 - -0.2 1,670,652 - -1.5 1,670,657 - +1.0 1,670,705 - +0.2 1,670,858 - HP15_1582 0.14 +0.2 1,670,860 + HP15_1582 0.14 -0.2 1,670,913 + HP15_1582 0.16 +0.1 1,670,952 - HP15_1582 0.17 -2.0 1,671,000 - HP15_1582 0.19 -2.6 1,671,052 + HP15_1582 0.21 +0.3 1,671,149 - HP15_1582 0.24 +0.2 1,671,238 - HP15_1582 0.27 +0.8 1,671,305 - HP15_1582 0.29 +0.5 1,671,621 - HP15_1582 0.40 +0.6 1,671,626 - HP15_1582 0.40 -0.5 1,671,813 + HP15_1582 0.46 +0.0 1,671,899 + HP15_1582 0.49 -1.7 1,671,964 - HP15_1582 0.51 -2.5 1,672,111 - HP15_1582 0.56 +0.6 1,672,111 - HP15_1582 0.56 +0.9 1,672,118 - HP15_1582 0.56 -0.6 1,672,207 - HP15_1582 0.59 +0.7 1,672,211 + HP15_1582 0.59 +0.1 1,672,213 - HP15_1582 0.59 +0.5 1,672,224 + HP15_1582 0.59 -0.0 1,672,227 - HP15_1582 0.60 +0.1 1,672,407 + HP15_1582 0.65 -2.8 1,672,450 + HP15_1582 0.67 +0.0 1,672,466 + HP15_1582 0.67 +0.6 1,672,512 + HP15_1582 0.69 +0.1 1,672,527 + HP15_1582 0.69 +0.2 1,672,535 - HP15_1582 0.70 +0.1 1,672,551 - HP15_1582 0.70 -2.8 1,672,628 + HP15_1582 0.73 -2.1 1,672,682 + HP15_1582 0.75 -1.5 1,672,705 - HP15_1582 0.75 -1.4 1,672,909 - HP15_1582 0.82 -0.2 1,672,945 - HP15_1582 0.83 +0.1 1,672,982 + HP15_1582 0.84 -2.4 1,673,015 - HP15_1582 0.86 +0.1 1,673,083 - HP15_1582 0.88 -0.8 1,673,164 - +1.0 1,673,181 - +0.8 1,673,181 - -0.9 1,673,181 - +0.4 1,673,203 - +0.3 1,673,308 + -1.4 1,673,359 + +0.5 1,673,405 + -0.1 1,673,405 + -0.1 1,673,405 + +0.1 1,673,508 + +0.6 1,673,513 + +0.8 1,673,542 + -0.6 1,673,557 - +0.0 1,673,605 - -0.4 1,673,621 - +0.1 1,673,819 + HP15_1583 0.32 -0.5 1,673,829 + HP15_1583 0.34 +0.4 1,673,837 - HP15_1583 0.35 +1.1 1,673,839 - HP15_1583 0.36 -0.8 1,673,928 + HP15_1583 0.52 -0.1 1,674,021 - HP15_1583 0.69 +0.0 1,674,023 + HP15_1583 0.69 -0.2 1,674,090 - HP15_1583 0.81 -0.9 1,674,153 + -0.1 1,674,241 - +0.7 1,674,252 + +1.0 1,674,289 + -0.9 1,674,297 - -0.3 1,674,328 + +0.6 1,674,361 - +0.3 1,674,371 - +0.1
Or see this region's nucleotide sequence